Wall clock time and date at job start Wed Apr 15 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00107 * 2 1 4 4 H 1.48507 * 109.46977 * 269.99740 * 3 2 1 5 5 H 1.48501 * 109.47177 * 29.99569 * 3 2 1 6 6 H 1.48495 * 109.47062 * 149.99776 * 3 2 1 7 7 C 1.37882 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46658 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46908 * 179.97438 * 10 9 7 12 12 C 1.47845 * 111.00128 * 290.84174 * 11 10 9 13 13 C 1.54909 * 104.79374 * 213.63978 * 12 11 10 14 14 C 1.55131 * 101.65719 * 37.06983 * 13 12 11 15 15 H 1.09007 * 110.85516 * 82.79754 * 14 13 12 16 16 O 1.42894 * 110.71063 * 205.96593 * 14 13 12 17 17 C 1.35899 * 116.99729 * 269.84720 * 16 14 13 18 18 C 1.38774 * 120.04128 * 185.47450 * 17 16 14 19 19 C 1.38135 * 119.99591 * 179.97438 * 18 17 16 20 20 C 1.38258 * 120.07862 * 359.97438 * 19 18 17 21 21 C 1.38477 * 120.08343 * 0.04541 * 20 19 18 22 22 F 1.35102 * 119.99655 * 179.97438 * 21 20 19 23 23 C 1.38384 * 120.00642 * 359.70051 * 21 20 19 24 24 C 1.47446 * 110.99488 * 170.00105 * 11 10 9 25 25 H 0.97003 * 119.99984 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47338 * 60.00285 * 9 7 2 27 27 H 1.09001 * 109.47053 * 299.99723 * 9 7 2 28 28 H 1.09001 * 109.46768 * 299.99989 * 10 9 7 29 29 H 1.08999 * 109.46967 * 60.00115 * 10 9 7 30 30 H 1.09006 * 110.37130 * 332.46660 * 12 11 10 31 31 H 1.08997 * 110.37153 * 94.80847 * 12 11 10 32 32 H 1.08998 * 110.98458 * 278.97600 * 13 12 11 33 33 H 1.09001 * 111.01850 * 155.17877 * 13 12 11 34 34 H 1.07997 * 120.00048 * 359.97438 * 18 17 16 35 35 H 1.07990 * 119.96302 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.95752 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.04198 * 180.28316 * 23 21 20 38 38 H 1.08998 * 109.88442 * 242.66108 * 24 11 10 39 39 H 1.09000 * 109.89031 * 3.85153 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 0.8207 -5.1472 1.2914 13 6 0.8632 -6.6796 1.5145 14 6 2.2636 -7.0394 0.9524 15 1 3.0384 -6.8622 1.6984 16 8 2.2955 -8.3965 0.5061 17 6 2.6640 -9.3366 1.4157 18 6 2.8267 -10.6575 1.0225 19 6 3.2018 -11.6122 1.9477 20 6 3.4161 -11.2534 3.2657 21 6 3.2542 -9.9363 3.6616 22 9 3.4635 -9.5878 4.9500 23 6 2.8837 -8.9761 2.7366 24 6 2.4202 -6.0698 -0.2378 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5566 0.8903 28 1 2.8717 -3.6044 -0.8895 29 1 2.8717 -3.6044 0.8905 30 1 1.3491 -4.6321 2.0937 31 1 -0.2110 -4.8008 1.2317 32 1 0.0757 -7.1783 0.9495 33 1 0.7938 -6.9223 2.5748 34 1 2.6601 -10.9390 -0.0067 35 1 3.3287 -12.6398 1.6411 36 1 3.7097 -12.0013 3.9873 37 1 2.7618 -7.9480 3.0438 38 1 2.1482 -6.5740 -1.1651 39 1 3.4493 -5.7149 -0.2942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183351683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:07 Heat of formation + Delta-G solvation = -74.455807 kcal Electronic energy + Delta-G solvation = -20954.110510 eV Core-core repulsion = 17582.491738 eV Total energy + Delta-G solvation = -3371.618771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.99185 -41.49268 -39.73637 -37.98009 -35.48000 -33.34504 -31.74614 -31.04107 -30.46643 -29.23535 -26.36065 -24.20166 -23.67641 -23.21847 -21.91265 -21.49633 -19.79075 -18.56754 -17.93404 -17.29364 -17.10427 -16.80232 -16.61367 -16.52184 -15.97369 -15.70488 -15.54153 -15.14643 -14.88585 -14.37848 -14.20820 -13.91834 -13.68739 -13.51556 -13.03485 -12.95529 -12.83438 -12.65136 -12.59340 -12.39006 -12.28413 -11.88222 -11.83929 -11.66078 -11.33429 -11.26323 -10.56235 -9.97293 -9.32720 -9.27136 -8.20866 -6.32466 0.10098 0.24862 1.40078 1.41585 1.52411 1.96036 2.39850 2.57316 3.01045 3.12723 3.17248 3.39694 3.57090 3.70920 3.81579 3.96767 4.02053 4.16616 4.25400 4.31933 4.36066 4.47842 4.59313 4.63796 4.74066 4.84413 4.93176 4.97913 4.99746 5.06329 5.07651 5.22592 5.33470 5.44443 5.61548 5.71278 5.76472 6.00893 6.10204 6.26918 6.30148 6.84910 7.36853 8.91330 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034517 B = 0.002922 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.996535 B = 9578.725895 C = 9914.660856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.037 3.963 10 C 0.073 3.927 11 N -0.539 5.539 12 C 0.046 3.954 13 C -0.138 4.138 14 C 0.070 3.930 15 H 0.090 0.910 16 O -0.303 6.303 17 C 0.144 3.856 18 C -0.166 4.166 19 C -0.042 4.042 20 C -0.192 4.192 21 C 0.117 3.883 22 F -0.147 7.147 23 C -0.260 4.260 24 C 0.049 3.951 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.177 0.823 36 H 0.157 0.843 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.152 -24.756 5.145 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.055 4.055 11 N -0.264 5.264 12 C -0.081 4.081 13 C -0.176 4.176 14 C 0.013 3.987 15 H 0.108 0.892 16 O -0.215 6.215 17 C 0.099 3.901 18 C -0.185 4.185 19 C -0.060 4.060 20 C -0.211 4.211 21 C 0.098 3.902 22 F -0.126 7.126 23 C -0.279 4.279 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.012 0.988 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.194 0.806 36 H 0.175 0.825 37 H 0.155 0.845 38 H 0.109 0.891 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.603 -24.614 4.586 25.893 hybrid contribution 0.606 1.597 1.099 2.031 sum 7.209 -23.017 5.685 24.780 Atomic orbital electron populations 1.70113 1.07847 1.27798 1.51404 1.25974 0.95751 1.03367 0.94630 0.85427 0.78633 0.78326 0.78532 1.19729 1.20763 1.18671 1.21630 0.93569 0.92241 1.50941 0.92052 1.18875 0.94182 0.91863 0.95104 1.22252 0.95409 0.88340 0.99462 1.63631 1.28195 1.01948 1.32625 1.22921 0.99947 0.95375 0.89888 1.23179 0.97080 0.94889 1.02409 1.23713 0.98254 0.79338 0.97441 0.89227 1.86134 1.82298 1.15834 1.37256 1.19036 0.93631 0.90183 0.87293 1.20893 1.05525 0.89432 1.02606 1.21237 0.93382 1.00759 0.90577 1.21401 1.06570 0.94175 0.98963 1.17689 1.00290 0.94233 0.78029 1.91488 1.92466 1.93055 1.35603 1.21300 1.11921 1.01131 0.93565 1.22817 0.96469 0.90230 0.98332 0.92744 0.98978 0.98841 0.91480 0.95434 0.93651 0.91036 0.89390 0.88936 0.82927 0.80566 0.82510 0.84520 0.89135 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.34 7.74 -2.92 -0.02 3.31 16 9 C 0.04 2.00 5.02 29.85 0.15 2.15 16 10 C 0.07 3.07 4.50 86.30 0.39 3.45 16 11 N -0.54 -19.48 5.16 -885.51 -4.57 -24.05 16 12 C 0.05 1.52 5.78 86.77 0.50 2.02 16 13 C -0.14 -3.47 6.62 31.98 0.21 -3.26 16 14 C 0.07 1.71 2.73 31.77 0.09 1.80 16 15 H 0.09 2.06 6.25 -2.38 -0.01 2.05 16 16 O -0.30 -7.20 9.86 -92.41 -0.91 -8.11 16 17 C 0.14 3.03 6.67 22.50 0.15 3.18 16 18 C -0.17 -2.61 9.99 22.37 0.22 -2.39 16 19 C -0.04 -0.48 10.04 22.25 0.22 -0.26 16 20 C -0.19 -2.77 10.02 22.33 0.22 -2.55 16 21 C 0.12 2.34 7.30 22.36 0.16 2.51 16 22 F -0.15 -3.30 17.27 44.97 0.78 -2.52 16 23 C -0.26 -5.54 8.89 22.41 0.20 -5.34 16 24 C 0.05 1.41 6.64 86.65 0.58 1.98 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H -0.01 -0.39 7.49 -2.39 -0.02 -0.41 16 28 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 29 H 0.03 1.12 7.85 -2.39 -0.02 1.10 16 30 H 0.05 1.53 7.62 -2.38 -0.02 1.51 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 2.01 7.76 -2.39 -0.02 1.99 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.18 0.71 8.06 -2.92 -0.02 0.68 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.14 2.93 5.59 -2.91 -0.02 2.91 16 38 H 0.09 2.53 8.06 -2.39 -0.02 2.51 16 39 H 0.07 1.91 7.55 -2.39 -0.02 1.89 16 Total: -1.00 -66.63 326.05 2.43 -64.19 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.04 Total: 8.25 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.79 Total: -27.17 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -4.29 Total: -81.01 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.91 Total: -8.11 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.63 2.43 -64.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183351683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.265 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds