Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48505 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46995 * 299.99424 * 3 2 1 6 6 H 1.48496 * 109.47235 * 59.99496 * 3 2 1 7 7 C 1.37873 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.38223 * 119.98591 * 266.16647 * 10 9 7 12 12 C 1.38435 * 119.97056 * 180.02562 * 11 10 9 13 13 F 1.35106 * 120.02021 * 180.02562 * 12 11 10 14 14 C 1.38475 * 119.95278 * 359.97438 * 12 11 10 15 15 C 1.38176 * 119.97344 * 0.02562 * 14 12 11 16 16 C 1.38221 * 119.98983 * 86.16730 * 10 9 7 17 17 C 1.50701 * 119.97173 * 0.02562 * 16 10 9 18 18 N 1.46899 * 109.47270 * 282.97383 * 17 16 10 19 19 C 1.47016 * 110.99774 * 288.14503 * 18 17 16 20 20 C 1.53095 * 109.25637 * 177.60485 * 19 18 17 21 21 O 1.43023 * 109.25860 * 56.84860 * 20 19 18 22 22 C 1.43009 * 113.73874 * 301.32827 * 21 20 19 23 23 C 1.47011 * 111.00240 * 164.50794 * 18 17 16 24 24 H 0.97002 * 119.99783 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47187 * 59.99421 * 9 7 2 26 26 H 1.09000 * 109.47252 * 299.99363 * 9 7 2 27 27 H 1.08000 * 120.01135 * 0.02562 * 11 10 9 28 28 H 1.08000 * 120.01161 * 179.97438 * 14 12 11 29 29 H 1.07998 * 119.98413 * 179.72500 * 15 14 12 30 30 H 1.09002 * 109.47077 * 42.97360 * 17 16 10 31 31 H 1.09004 * 109.47265 * 162.97061 * 17 16 10 32 32 H 1.09001 * 109.50554 * 297.54184 * 19 18 17 33 33 H 1.08998 * 109.50528 * 57.67367 * 19 18 17 34 34 H 1.08999 * 109.50962 * 296.91252 * 20 19 18 35 35 H 1.09005 * 109.54525 * 176.80386 * 20 19 18 36 36 H 1.08996 * 109.50586 * 298.73639 * 22 21 20 37 37 H 1.09003 * 109.54447 * 178.62427 * 22 21 20 38 38 H 1.08999 * 109.50995 * 302.32836 * 23 18 17 39 39 H 1.09008 * 109.50674 * 62.45901 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6184 -4.2217 -1.1940 12 6 3.5176 -5.2742 -1.1936 13 9 3.8980 -5.8387 -2.3606 14 6 4.0277 -5.7474 0.0037 15 6 3.6382 -5.1689 1.1966 16 6 2.7401 -4.1177 1.1950 17 6 2.3157 -3.4881 2.4967 18 7 3.0181 -2.2102 2.6745 19 6 4.4395 -2.4284 2.9802 20 6 5.1442 -1.0744 3.0982 21 8 4.4901 -0.2876 4.0974 22 6 3.1044 -0.0550 3.8311 23 6 2.3789 -1.3987 3.7205 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.2202 -3.8516 -2.1272 28 1 4.7289 -6.5687 0.0051 29 1 4.0325 -5.5407 2.1308 30 1 1.2401 -3.3124 2.4817 31 1 2.5632 -4.1565 3.3214 32 1 4.5303 -2.9693 3.9222 33 1 4.8988 -3.0093 2.1804 34 1 5.0999 -0.5563 2.1402 35 1 6.1857 -1.2288 3.3806 36 1 3.0007 0.4927 2.8945 37 1 2.6697 0.5275 4.6434 38 1 1.3341 -1.2279 3.4611 39 1 2.4368 -1.9231 4.6744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -62.588898 kcal Electronic energy + Delta-G solvation = -22743.174856 eV Core-core repulsion = 19372.070672 eV Total energy + Delta-G solvation = -3371.104183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.44654 -39.50458 -38.42799 -35.27679 -33.40135 -31.34090 -31.00023 -30.64292 -27.65244 -26.79385 -23.94397 -23.70191 -23.23636 -21.46508 -20.31216 -19.74678 -16.69068 -16.30566 -16.14986 -15.98851 -15.73861 -15.20972 -15.11305 -14.69915 -14.51497 -14.40719 -13.89664 -13.55672 -13.29525 -13.04924 -12.52447 -12.35109 -12.05430 -11.61149 -11.48459 -11.32095 -11.17343 -11.02241 -10.87501 -10.74658 -10.45110 -10.33549 -10.16283 -9.55728 -9.34777 -9.29581 -8.33731 -8.27963 -7.89902 -7.69074 -5.95655 -3.91858 1.66265 1.86369 3.30145 3.39986 3.44689 3.99174 4.19143 4.45587 4.56507 4.74536 5.15230 5.23629 5.32900 5.36323 5.39783 5.43373 5.51273 5.56203 5.62661 5.73010 5.81983 5.94302 5.99269 6.04295 6.14868 6.18521 6.26792 6.39021 6.50373 6.58548 6.64093 6.87718 7.05168 7.40194 7.43280 7.52325 7.57098 7.59276 7.77567 8.02153 8.39109 9.09023 9.67313 11.15665 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.008126 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.783133 B = 3445.036871 C = 4642.014855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.057 3.943 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.461 4.461 8 H 0.059 0.941 9 C 0.052 3.948 10 C 0.015 3.985 11 C -0.161 4.161 12 C 0.092 3.908 13 F -0.151 7.151 14 C -0.184 4.184 15 C -0.090 4.090 16 C -0.098 4.098 17 C 0.109 3.891 18 N -0.497 5.497 19 C 0.022 3.978 20 C 0.064 3.936 21 O -0.393 6.393 22 C 0.064 3.936 23 C 0.031 3.969 24 H 0.257 0.743 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 -6.876 6.135 11.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.142 4.142 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.015 3.985 10 C 0.014 3.986 11 C -0.180 4.180 12 C 0.072 3.928 13 F -0.130 7.130 14 C -0.203 4.203 15 C -0.109 4.109 16 C -0.098 4.098 17 C -0.018 4.018 18 N -0.221 5.221 19 C -0.107 4.107 20 C -0.013 4.013 21 O -0.312 6.312 22 C -0.013 4.013 23 C -0.098 4.098 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.142 -6.431 5.827 10.633 hybrid contribution 0.475 0.262 0.187 0.574 sum 6.617 -6.169 6.015 10.864 Atomic orbital electron populations 1.69956 1.05796 1.26131 1.52497 1.24835 0.94614 0.98531 0.96196 0.86704 0.80388 0.84461 0.77407 1.19771 1.21524 1.21147 1.20810 0.92871 0.88680 1.47645 0.92316 1.18396 0.92229 0.89681 0.98174 1.20428 0.94513 0.93533 0.90087 1.21124 0.99939 0.96746 1.00141 1.17774 0.98592 0.95495 0.80905 1.91433 1.90246 1.84282 1.47058 1.20774 1.04550 1.03502 0.91500 1.20760 0.97120 0.96195 0.96817 1.19638 0.98582 0.96275 0.95339 1.20853 0.99598 0.88819 0.92508 1.62050 1.00525 1.15976 1.43538 1.22745 0.90729 0.97650 0.99526 1.22616 0.95412 0.90717 0.92526 1.87881 1.23204 1.72496 1.47635 1.22657 0.80792 0.96063 1.01785 1.22647 1.00299 0.94584 0.92227 0.93328 0.95762 0.94832 0.85195 0.86015 0.86399 0.89276 0.95370 0.95185 0.89892 0.91988 0.89338 0.91672 0.89182 0.89012 0.95387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 13.29 55.43 0.74 -24.52 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.88 21.01 29.04 -169.99 -4.94 16.07 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.46 -11.79 8.01 -34.44 -0.28 -12.07 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.05 1.22 4.62 -29.03 -0.13 1.09 16 10 C 0.02 0.30 5.07 -104.63 -0.53 -0.23 16 11 C -0.16 -3.08 9.67 -39.51 -0.38 -3.47 16 12 C 0.09 1.60 7.30 -39.42 -0.29 1.31 16 13 F -0.15 -2.61 17.27 2.25 0.04 -2.57 16 14 C -0.18 -2.84 10.03 -39.52 -0.40 -3.24 16 15 C -0.09 -1.37 8.99 -39.60 -0.36 -1.72 16 16 C -0.10 -1.71 4.71 -104.62 -0.49 -2.21 16 17 C 0.11 1.81 4.45 -4.98 -0.02 1.79 16 18 N -0.50 -8.71 3.56 -235.74 -0.84 -9.55 16 19 C 0.02 0.34 5.47 -3.71 -0.02 0.32 16 20 C 0.06 1.01 7.01 37.21 0.26 1.27 16 21 O -0.39 -6.69 10.83 -35.23 -0.38 -7.07 16 22 C 0.06 1.08 7.01 37.21 0.26 1.34 16 23 C 0.03 0.51 5.62 -3.71 -0.02 0.49 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 26 H 0.03 0.82 6.34 -51.93 -0.33 0.50 16 27 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.12 1.47 8.01 -52.49 -0.42 1.05 16 30 H 0.09 1.58 6.39 -51.93 -0.33 1.24 16 31 H 0.03 0.41 7.88 -51.93 -0.41 0.00 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 1.29 6.89 -51.93 -0.36 0.93 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.62 8.04 -51.93 -0.42 1.20 16 39 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -27.84 320.83 -8.62 -36.46 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.58 Total: 0.25 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.49 Total: -13.90 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: -0.10 Total: -34.07 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.38 Total: -7.07 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.94 Total: 16.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.84 -8.62 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.128 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds