Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48505 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46995 * 299.99424 * 3 2 1 6 6 H 1.48496 * 109.47235 * 59.99496 * 3 2 1 7 7 C 1.37873 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.38223 * 119.98591 * 266.16647 * 10 9 7 12 12 C 1.38435 * 119.97056 * 180.02562 * 11 10 9 13 13 F 1.35106 * 120.02021 * 180.02562 * 12 11 10 14 14 C 1.38475 * 119.95278 * 359.97438 * 12 11 10 15 15 C 1.38176 * 119.97344 * 0.02562 * 14 12 11 16 16 C 1.38221 * 119.98983 * 86.16730 * 10 9 7 17 17 C 1.50701 * 119.97173 * 0.02562 * 16 10 9 18 18 N 1.46899 * 109.47270 * 282.97383 * 17 16 10 19 19 C 1.47016 * 110.99774 * 288.14503 * 18 17 16 20 20 C 1.53095 * 109.25637 * 177.60485 * 19 18 17 21 21 O 1.43023 * 109.25860 * 56.84860 * 20 19 18 22 22 C 1.43009 * 113.73874 * 301.32827 * 21 20 19 23 23 C 1.47011 * 111.00240 * 164.50794 * 18 17 16 24 24 H 0.97002 * 119.99783 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47187 * 59.99421 * 9 7 2 26 26 H 1.09000 * 109.47252 * 299.99363 * 9 7 2 27 27 H 1.08000 * 120.01135 * 0.02562 * 11 10 9 28 28 H 1.08000 * 120.01161 * 179.97438 * 14 12 11 29 29 H 1.07998 * 119.98413 * 179.72500 * 15 14 12 30 30 H 1.09002 * 109.47077 * 42.97360 * 17 16 10 31 31 H 1.09004 * 109.47265 * 162.97061 * 17 16 10 32 32 H 1.09001 * 109.50554 * 297.54184 * 19 18 17 33 33 H 1.08998 * 109.50528 * 57.67367 * 19 18 17 34 34 H 1.08999 * 109.50962 * 296.91252 * 20 19 18 35 35 H 1.09005 * 109.54525 * 176.80386 * 20 19 18 36 36 H 1.08996 * 109.50586 * 298.73639 * 22 21 20 37 37 H 1.09003 * 109.54447 * 178.62427 * 22 21 20 38 38 H 1.08999 * 109.50995 * 302.32836 * 23 18 17 39 39 H 1.09008 * 109.50674 * 62.45901 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6184 -4.2217 -1.1940 12 6 3.5176 -5.2742 -1.1936 13 9 3.8980 -5.8387 -2.3606 14 6 4.0277 -5.7474 0.0037 15 6 3.6382 -5.1689 1.1966 16 6 2.7401 -4.1177 1.1950 17 6 2.3157 -3.4881 2.4967 18 7 3.0181 -2.2102 2.6745 19 6 4.4395 -2.4284 2.9802 20 6 5.1442 -1.0744 3.0982 21 8 4.4901 -0.2876 4.0974 22 6 3.1044 -0.0550 3.8311 23 6 2.3789 -1.3987 3.7205 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.2202 -3.8516 -2.1272 28 1 4.7289 -6.5687 0.0051 29 1 4.0325 -5.5407 2.1308 30 1 1.2401 -3.3124 2.4817 31 1 2.5632 -4.1565 3.3214 32 1 4.5303 -2.9693 3.9222 33 1 4.8988 -3.0093 2.1804 34 1 5.0999 -0.5563 2.1402 35 1 6.1857 -1.2288 3.3806 36 1 3.0007 0.4927 2.8945 37 1 2.6697 0.5275 4.6434 38 1 1.3341 -1.2279 3.4611 39 1 2.4368 -1.9231 4.6744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -78.162437 kcal Electronic energy + Delta-G solvation = -22743.850175 eV Core-core repulsion = 19372.070672 eV Total energy + Delta-G solvation = -3371.779503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.80714 -40.83875 -39.77139 -36.58370 -35.29145 -33.03131 -32.34232 -31.91659 -29.26429 -28.28011 -25.48611 -25.08877 -24.73389 -22.92715 -21.69640 -21.08650 -18.36742 -17.98943 -17.53297 -17.36836 -17.04822 -16.57666 -16.47805 -16.38783 -15.96561 -15.77900 -15.19018 -14.88410 -14.55529 -14.46985 -14.34910 -14.02819 -13.33498 -13.18032 -13.04591 -12.84211 -12.69322 -12.59351 -12.41035 -12.23059 -12.17099 -11.86770 -11.48152 -11.37047 -11.19803 -10.61991 -10.43080 -9.69875 -9.32196 -8.95491 -8.03854 -6.04244 0.29396 0.49490 1.36556 1.41529 1.50698 2.46581 2.67691 2.93145 3.22207 3.31563 3.40503 3.89478 3.93107 4.06699 4.10876 4.12773 4.26796 4.29506 4.37099 4.43382 4.46862 4.71555 4.72223 4.76423 4.83924 4.90607 4.95744 5.09929 5.11813 5.19818 5.26929 5.31064 5.52034 5.56994 5.92151 6.02222 6.09615 6.13649 6.26643 6.33244 6.38246 7.00868 7.57621 9.07408 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.008126 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.783133 B = 3445.036871 C = 4642.014855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.015 3.985 3 Si 0.931 3.069 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.449 4.449 8 H 0.048 0.952 9 C 0.065 3.935 10 C -0.013 4.013 11 C -0.178 4.178 12 C 0.084 3.916 13 F -0.151 7.151 14 C -0.166 4.166 15 C -0.075 4.075 16 C -0.098 4.098 17 C 0.113 3.887 18 N -0.527 5.527 19 C 0.027 3.973 20 C 0.061 3.939 21 O -0.397 6.397 22 C 0.065 3.935 23 C 0.037 3.963 24 H 0.256 0.744 25 H -0.009 1.009 26 H 0.018 0.982 27 H 0.115 0.885 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.034 0.966 35 H 0.121 0.879 36 H 0.031 0.969 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.592 -8.573 7.959 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.488 4.488 8 H 0.067 0.933 9 C 0.028 3.972 10 C -0.014 4.014 11 C -0.197 4.197 12 C 0.064 3.936 13 F -0.130 7.130 14 C -0.184 4.184 15 C -0.094 4.094 16 C -0.099 4.099 17 C -0.014 4.014 18 N -0.252 5.252 19 C -0.101 4.101 20 C -0.016 4.016 21 O -0.316 6.316 22 C -0.012 4.012 23 C -0.092 4.092 24 H 0.065 0.935 25 H 0.010 0.990 26 H 0.036 0.964 27 H 0.133 0.867 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.139 0.861 36 H 0.050 0.950 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.540 -8.133 7.649 14.057 hybrid contribution -0.225 0.715 -0.400 0.849 sum 8.316 -7.419 7.250 13.295 Atomic orbital electron populations 1.70057 1.07011 1.26613 1.54144 1.25403 0.95127 1.01152 0.96388 0.85919 0.79369 0.81548 0.77271 1.19605 1.21818 1.20480 1.20890 0.92261 0.89677 1.45974 0.93325 1.18071 0.92452 0.90918 0.95738 1.20096 0.95587 0.93793 0.91911 1.21049 1.01206 0.98080 0.99364 1.17847 0.98588 0.95232 0.81889 1.91434 1.90155 1.84117 1.47294 1.21195 1.03573 1.03349 0.90290 1.21120 0.95339 0.94411 0.98481 1.19788 0.98710 0.96878 0.94491 1.20800 0.98351 0.89154 0.93112 1.61951 1.01890 1.16722 1.44629 1.22732 0.89182 0.97590 1.00567 1.22766 0.97144 0.90454 0.91218 1.87879 1.23008 1.72841 1.47845 1.22649 0.81298 0.96212 1.01023 1.22535 0.98955 0.94651 0.93011 0.93465 0.99039 0.96377 0.86674 0.82353 0.82231 0.91451 0.92088 0.92969 0.89690 0.94708 0.86069 0.95043 0.86920 0.91176 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.34 13.29 21.45 0.28 -54.06 16 2 C 0.02 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.93 44.29 29.04 68.60 1.99 46.28 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.45 -23.79 8.01 25.60 0.20 -23.59 16 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.06 3.22 4.62 29.10 0.13 3.35 16 10 C -0.01 -0.54 5.07 -19.87 -0.10 -0.64 16 11 C -0.18 -6.93 9.67 22.31 0.22 -6.71 16 12 C 0.08 2.78 7.30 22.37 0.16 2.94 16 13 F -0.15 -4.97 17.27 44.97 0.78 -4.19 16 14 C -0.17 -4.40 10.03 22.31 0.22 -4.17 16 15 C -0.08 -1.95 8.99 22.26 0.20 -1.75 16 16 C -0.10 -3.26 4.71 -19.86 -0.09 -3.35 16 17 C 0.11 3.55 4.45 85.56 0.38 3.93 16 18 N -0.53 -17.81 3.56 -899.76 -3.21 -21.01 16 19 C 0.03 0.76 5.47 86.31 0.47 1.23 16 20 C 0.06 1.77 7.01 72.01 0.50 2.28 16 21 O -0.40 -12.71 10.83 -148.98 -1.61 -14.32 16 22 C 0.07 2.14 7.01 72.02 0.50 2.65 16 23 C 0.04 1.18 5.62 86.32 0.49 1.67 16 24 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 25 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16 26 H 0.02 0.94 6.34 -2.39 -0.02 0.93 16 27 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.16 2.90 8.01 -2.91 -0.02 2.87 16 30 H 0.07 2.40 6.39 -2.39 -0.02 2.39 16 31 H 0.06 1.52 7.88 -2.38 -0.02 1.50 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.33 6.89 -2.39 -0.02 2.31 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.03 1.24 7.63 -2.39 -0.02 1.22 16 37 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.07 2.54 8.04 -2.39 -0.02 2.52 16 39 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -61.93 320.83 3.03 -58.90 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.04 Total: 9.28 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 3.76 Total: -20.87 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.92 Total: -75.07 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.61 Total: -14.32 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.19 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.99 Total: 46.28 kcal Total: -61.93 3.03 -58.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.265 kcal (2) G-P(sol) polarization free energy of solvation -61.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds