Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48499 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47106 * 299.99636 * 3 2 1 6 6 H 1.48502 * 109.47136 * 59.99520 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 C 1.52997 * 109.47112 * 269.35041 * 13 12 11 15 15 C 1.53002 * 109.47290 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47443 * 179.97438 * 15 14 13 17 17 C 1.38261 * 119.99360 * 269.72955 * 16 15 14 18 18 C 1.38217 * 120.05587 * 179.72132 * 17 16 15 19 19 C 1.38223 * 120.02109 * 0.55088 * 18 17 16 20 20 C 1.38430 * 119.97659 * 359.72298 * 19 18 17 21 21 F 1.35100 * 120.02936 * 180.02562 * 20 19 18 22 22 C 1.38177 * 119.98289 * 89.99983 * 16 15 14 23 23 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 24 24 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 26 26 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 27 27 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 28 28 H 1.08991 * 109.47431 * 29.35308 * 13 12 11 29 29 H 1.09001 * 109.46798 * 149.35006 * 13 12 11 30 30 H 1.09003 * 109.47022 * 300.00021 * 14 13 12 31 31 H 1.09001 * 109.47318 * 60.00282 * 14 13 12 32 32 H 1.08993 * 109.46851 * 300.00645 * 15 14 13 33 33 H 1.09001 * 109.46929 * 59.99775 * 15 14 13 34 34 H 1.08013 * 119.97244 * 359.97438 * 17 16 15 35 35 H 1.08006 * 119.99088 * 180.26967 * 18 17 16 36 36 H 1.08005 * 120.00979 * 179.74573 * 19 18 17 37 37 H 1.08005 * 120.01384 * 359.97438 * 22 16 15 38 38 H 1.08997 * 113.75944 * 270.36826 * 23 12 11 39 39 H 1.09001 * 113.85960 * 139.01471 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 6 0.8543 -5.7312 -2.9675 15 6 1.5696 -6.4240 -4.1291 16 6 0.5650 -7.1841 -4.9561 17 6 0.2790 -8.5031 -4.6560 18 6 -0.6464 -9.1996 -5.4101 19 6 -1.2788 -8.5816 -6.4725 20 6 -0.9892 -7.2627 -6.7775 21 9 -1.6070 -6.6574 -7.8153 22 6 -0.0659 -6.5641 -6.0176 23 6 2.1608 -3.7400 -0.0455 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3474 -1.7966 1.0268 26 1 -0.3215 -2.8278 -1.5256 27 1 1.3291 -2.4995 -2.2139 28 1 2.3658 -4.2119 -2.7492 29 1 2.6193 -5.6522 -1.7348 30 1 0.3629 -6.4795 -2.3456 31 1 0.1094 -5.0390 -3.3601 32 1 2.0613 -5.6760 -4.7509 33 1 2.3143 -7.1162 -3.7361 34 1 0.7762 -8.9883 -3.8290 35 1 -0.8722 -10.2287 -5.1721 36 1 -1.9989 -9.1273 -7.0642 37 1 0.1605 -5.5349 -6.2544 38 1 3.1443 -3.5477 -0.4741 39 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473413849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -48.931917 kcal Electronic energy + Delta-G solvation = -20862.574241 eV Core-core repulsion = 17492.062269 eV Total energy + Delta-G solvation = -3370.511972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.02549 -39.44134 -38.88135 -35.17234 -33.75064 -32.07600 -30.98375 -30.52572 -27.71033 -25.71579 -25.06267 -23.38268 -22.86617 -21.33121 -20.63372 -18.59764 -17.45558 -17.13287 -16.55941 -16.32249 -15.72766 -15.25015 -15.02565 -14.85809 -14.39819 -13.99977 -13.76431 -13.69115 -13.22065 -13.06408 -12.70220 -12.21482 -12.05205 -11.88942 -11.69219 -11.48108 -11.36299 -11.18928 -10.97154 -10.88906 -10.47874 -10.43881 -10.20392 -9.93205 -9.28441 -9.10005 -8.80809 -8.63652 -8.20691 -7.77813 -6.25646 -4.35571 0.98861 1.03211 3.18291 3.27251 3.30907 3.40076 4.06117 4.25573 4.47760 4.58619 4.76501 4.87517 4.98711 5.02607 5.12583 5.22047 5.39560 5.45939 5.58301 5.76106 5.80191 5.89924 5.93573 6.00986 6.05754 6.07496 6.10917 6.21952 6.32522 6.40519 6.51630 6.55818 6.70421 6.73514 7.05965 7.22340 7.37692 7.76308 7.99912 8.03578 8.66553 9.34571 9.63201 10.80172 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.003152 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.954687 B = 8881.205207 C = 9391.746679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.243 3.757 10 O -0.572 6.572 11 C -0.012 4.012 12 N -0.481 5.481 13 C 0.019 3.981 14 C -0.102 4.102 15 C -0.084 4.084 16 C -0.043 4.043 17 C -0.128 4.128 18 C -0.090 4.090 19 C -0.164 4.164 20 C 0.099 3.901 21 F -0.142 7.142 22 C -0.152 4.152 23 C 0.009 3.991 24 H 0.270 0.730 25 H 0.388 0.612 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -14.721 -11.225 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.202 3.798 10 O -0.383 6.383 11 C -0.141 4.141 12 N -0.203 5.203 13 C -0.110 4.110 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.043 4.043 17 C -0.146 4.146 18 C -0.108 4.108 19 C -0.183 4.183 20 C 0.080 3.920 21 F -0.121 7.121 22 C -0.171 4.171 23 C -0.120 4.120 24 H 0.080 0.920 25 H 0.241 0.759 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.081 0.919 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.289 -15.630 -10.925 19.072 hybrid contribution 0.610 2.065 -0.884 2.327 sum 0.898 -13.565 -11.809 18.008 Atomic orbital electron populations 1.69442 1.06071 1.27645 1.50565 1.25063 0.94985 0.99620 0.93487 0.86381 0.80078 0.82817 0.77795 1.19625 1.20786 1.20671 1.21698 0.93691 0.90774 1.51467 0.91682 1.19759 0.85400 0.90783 0.83877 1.86041 1.47040 1.49522 1.55678 1.24794 1.00650 0.87202 1.01461 1.68543 1.25751 1.16774 1.09259 1.22631 0.96033 0.98109 0.94201 1.21425 0.98309 0.99276 0.94961 1.20698 0.95999 0.98952 0.96494 1.19833 0.96429 0.93928 0.94138 1.21163 0.98944 0.94180 1.00356 1.20997 0.95525 1.00045 0.94192 1.21109 1.03112 0.93714 1.00392 1.17720 0.95249 0.91863 0.87210 1.91497 1.81260 1.83489 1.55813 1.21101 0.98129 1.01081 0.96787 1.24093 0.94839 0.96745 0.96317 0.92009 0.75852 0.91072 0.92298 0.94397 0.92019 0.91257 0.91841 0.90760 0.90565 0.85247 0.85096 0.85021 0.84707 0.91868 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 11.20 55.43 0.62 -23.48 16 2 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.38 8.61 -34.44 -0.30 -14.67 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 6.18 1.40 -90.84 -0.13 6.05 16 10 O -0.57 -15.56 13.48 -35.23 -0.48 -16.03 16 11 C -0.01 -0.28 7.37 -2.57 -0.02 -0.30 16 12 N -0.48 -9.96 6.17 -237.94 -1.47 -11.43 16 13 C 0.02 0.32 4.80 -3.83 -0.02 0.30 16 14 C -0.10 -1.43 5.51 -26.73 -0.15 -1.57 16 15 C -0.08 -0.91 5.34 -27.88 -0.15 -1.06 16 16 C -0.04 -0.47 5.13 -104.64 -0.54 -1.01 16 17 C -0.13 -1.25 9.70 -39.58 -0.38 -1.63 16 18 C -0.09 -0.79 10.04 -39.59 -0.40 -1.19 16 19 C -0.16 -1.61 10.03 -39.52 -0.40 -2.01 16 20 C 0.10 1.14 7.30 -39.42 -0.29 0.86 16 21 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 22 C -0.15 -1.76 9.68 -39.51 -0.38 -2.14 16 23 C 0.01 0.19 7.34 -2.76 -0.02 0.17 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.39 10.68 6.60 45.56 0.30 10.98 16 26 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 27 H 0.06 1.35 7.43 -51.93 -0.39 0.96 16 28 H 0.04 0.62 7.38 -51.93 -0.38 0.24 16 29 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.06 1.29 7.87 -51.93 -0.41 0.88 16 39 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -28.34 331.07 -9.64 -37.97 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.06 Total: 10.80 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -3.26 Total: -16.45 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: -0.85 Total: -34.92 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.48 Total: -16.03 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.34 -9.64 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473413849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.959 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds