Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48499 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47106 * 299.99636 * 3 2 1 6 6 H 1.48502 * 109.47136 * 59.99520 * 3 2 1 7 7 C 1.37882 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99818 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93456 * 309.66590 * 9 7 2 11 11 C 1.53932 * 113.73345 * 81.23268 * 9 7 2 12 12 N 1.48304 * 86.06231 * 138.13032 * 11 9 7 13 13 C 1.46896 * 111.00332 * 222.41853 * 12 11 9 14 14 C 1.52997 * 109.47112 * 269.35041 * 13 12 11 15 15 C 1.53002 * 109.47290 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47443 * 179.97438 * 15 14 13 17 17 C 1.38261 * 119.99360 * 269.72955 * 16 15 14 18 18 C 1.38217 * 120.05587 * 179.72132 * 17 16 15 19 19 C 1.38223 * 120.02109 * 0.55088 * 18 17 16 20 20 C 1.38430 * 119.97659 * 359.72298 * 19 18 17 21 21 F 1.35100 * 120.02936 * 180.02562 * 20 19 18 22 22 C 1.38177 * 119.98289 * 89.99983 * 16 15 14 23 23 C 1.47962 * 90.75276 * 335.30996 * 12 11 9 24 24 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 25 25 H 0.96700 * 114.00311 * 50.33594 * 10 9 7 26 26 H 1.09004 * 113.75677 * 252.50317 * 11 9 7 27 27 H 1.09000 * 113.76003 * 23.86640 * 11 9 7 28 28 H 1.08991 * 109.47431 * 29.35308 * 13 12 11 29 29 H 1.09001 * 109.46798 * 149.35006 * 13 12 11 30 30 H 1.09003 * 109.47022 * 300.00021 * 14 13 12 31 31 H 1.09001 * 109.47318 * 60.00282 * 14 13 12 32 32 H 1.08993 * 109.46851 * 300.00645 * 15 14 13 33 33 H 1.09001 * 109.46929 * 59.99775 * 15 14 13 34 34 H 1.08013 * 119.97244 * 359.97438 * 17 16 15 35 35 H 1.08006 * 119.99088 * 180.26967 * 18 17 16 36 36 H 1.08005 * 120.00979 * 179.74573 * 19 18 17 37 37 H 1.08005 * 120.01384 * 359.97438 * 22 16 15 38 38 H 1.08997 * 113.75944 * 270.36826 * 23 12 11 39 39 H 1.09001 * 113.85960 * 139.01471 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.2446 -2.5611 1.0132 11 6 0.7557 -2.9286 -1.3922 12 7 1.1877 -4.2954 -1.0119 13 6 1.8744 -4.9601 -2.1274 14 6 0.8543 -5.7312 -2.9675 15 6 1.5696 -6.4240 -4.1291 16 6 0.5650 -7.1841 -4.9561 17 6 0.2790 -8.5031 -4.6560 18 6 -0.6464 -9.1996 -5.4101 19 6 -1.2788 -8.5816 -6.4725 20 6 -0.9892 -7.2627 -6.7775 21 9 -1.6070 -6.6574 -7.8153 22 6 -0.0659 -6.5641 -6.0176 23 6 2.1608 -3.7400 -0.0455 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3474 -1.7966 1.0268 26 1 -0.3215 -2.8278 -1.5256 27 1 1.3291 -2.4995 -2.2139 28 1 2.3658 -4.2119 -2.7492 29 1 2.6193 -5.6522 -1.7348 30 1 0.3629 -6.4795 -2.3456 31 1 0.1094 -5.0390 -3.3601 32 1 2.0613 -5.6760 -4.7509 33 1 2.3143 -7.1162 -3.7361 34 1 0.7762 -8.9883 -3.8290 35 1 -0.8722 -10.2287 -5.1721 36 1 -1.9989 -9.1273 -7.0642 37 1 0.1605 -5.5349 -6.2544 38 1 3.1443 -3.5477 -0.4741 39 1 2.2070 -4.2859 0.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473413849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -67.082585 kcal Electronic energy + Delta-G solvation = -20863.361313 eV Core-core repulsion = 17492.062269 eV Total energy + Delta-G solvation = -3371.299044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.92049 -40.76918 -40.09458 -36.67495 -35.18467 -34.12244 -32.02692 -31.40753 -29.23224 -27.27137 -26.86248 -24.74052 -23.66021 -22.47457 -21.78724 -20.47668 -19.19037 -18.22833 -17.41667 -17.14658 -17.08708 -16.75007 -16.61927 -16.32216 -15.83478 -15.36835 -15.05363 -14.82378 -14.32648 -14.17810 -13.98610 -13.79943 -13.46341 -13.38528 -13.05905 -12.81623 -12.75818 -12.43739 -12.40336 -12.29945 -12.22359 -11.99817 -11.62545 -11.43429 -11.14641 -10.63257 -10.12042 -9.90359 -9.62642 -9.52710 -8.24623 -6.42787 0.19333 0.25820 1.40090 1.43310 1.54319 2.36762 2.61568 2.96404 3.14142 3.27369 3.69206 3.82562 3.99337 4.02093 4.15030 4.22743 4.28160 4.30538 4.40658 4.43361 4.57623 4.60504 4.64990 4.75638 4.87730 4.93000 5.01498 5.06568 5.14580 5.15109 5.19893 5.37525 5.39059 5.42905 5.55857 5.63426 5.74540 5.96631 5.99397 6.37753 6.63007 7.30426 7.50676 8.80182 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.003152 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.954687 B = 8881.205207 C = 9391.746679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.214 3.786 10 O -0.584 6.584 11 C -0.001 4.001 12 N -0.484 5.484 13 C 0.018 3.982 14 C -0.092 4.092 15 C -0.073 4.073 16 C -0.056 4.056 17 C -0.129 4.129 18 C -0.086 4.086 19 C -0.165 4.165 20 C 0.073 3.927 21 F -0.153 7.153 22 C -0.168 4.168 23 C 0.018 3.982 24 H 0.273 0.727 25 H 0.381 0.619 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -16.162 -11.557 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.599 4.599 8 H 0.083 0.917 9 C 0.174 3.826 10 O -0.395 6.395 11 C -0.130 4.130 12 N -0.207 5.207 13 C -0.110 4.110 14 C -0.130 4.130 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.147 4.147 18 C -0.104 4.104 19 C -0.183 4.183 20 C 0.054 3.946 21 F -0.132 7.132 22 C -0.187 4.187 23 C -0.111 4.111 24 H 0.082 0.918 25 H 0.234 0.766 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.168 0.832 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.430 -17.089 -11.264 20.517 hybrid contribution 0.229 2.446 -0.775 2.576 sum 1.659 -14.643 -12.039 19.029 Atomic orbital electron populations 1.69525 1.07215 1.28511 1.50711 1.25827 0.95804 1.02762 0.93017 0.85374 0.78956 0.78720 0.77755 1.19085 1.20350 1.20432 1.21963 0.93851 0.91903 1.52138 0.91740 1.20176 0.85919 0.92083 0.84457 1.86024 1.47478 1.49228 1.56752 1.24523 0.99229 0.88971 1.00324 1.68460 1.26282 1.15270 1.10659 1.22738 0.96826 0.98353 0.93115 1.21308 0.97470 0.98614 0.95639 1.20592 0.96046 0.99215 0.95250 1.19892 0.96804 0.94749 0.94198 1.21492 0.98806 0.93638 1.00743 1.21390 0.94464 1.01369 0.93156 1.21425 1.03182 0.92971 1.00735 1.18012 0.96065 0.92920 0.87555 1.91462 1.81544 1.83840 1.56361 1.21205 0.98762 1.01184 0.97551 1.24030 0.95073 0.95000 0.96949 0.91762 0.76618 0.93179 0.92405 0.94348 0.89695 0.91489 0.94018 0.90559 0.88439 0.83160 0.81910 0.83157 0.85205 0.90308 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.97 11.20 21.45 0.24 -49.73 16 2 C 0.03 1.36 5.40 84.66 0.46 1.81 16 3 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.56 -30.02 8.61 25.60 0.22 -29.80 16 8 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.21 10.97 1.40 -10.89 -0.02 10.96 16 10 O -0.58 -32.42 13.48 -148.98 -2.01 -34.43 16 11 C 0.00 -0.05 7.37 86.34 0.64 0.59 16 12 N -0.48 -19.73 6.17 -909.93 -5.61 -25.34 16 13 C 0.02 0.56 4.80 86.30 0.41 0.98 16 14 C -0.09 -2.47 5.51 30.59 0.17 -2.31 16 15 C -0.07 -1.46 5.34 29.85 0.16 -1.30 16 16 C -0.06 -1.15 5.13 -19.87 -0.10 -1.25 16 17 C -0.13 -2.15 9.70 22.27 0.22 -1.94 16 18 C -0.09 -1.27 10.04 22.26 0.22 -1.05 16 19 C -0.16 -2.93 10.03 22.31 0.22 -2.70 16 20 C 0.07 1.68 7.30 22.37 0.16 1.84 16 21 F -0.15 -3.86 17.27 44.97 0.78 -3.09 16 22 C -0.17 -3.87 9.68 22.31 0.22 -3.65 16 23 C 0.02 0.77 7.34 86.41 0.63 1.41 16 24 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 25 H 0.38 21.64 6.60 -74.06 -0.49 21.15 16 26 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 27 H 0.06 2.68 7.43 -2.39 -0.02 2.66 16 28 H 0.04 1.20 7.38 -2.39 -0.02 1.18 16 29 H 0.08 2.26 8.08 -2.39 -0.02 2.25 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 33 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 34 H 0.15 1.85 8.06 -2.90 -0.02 1.82 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 37 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.08 3.09 7.87 -2.39 -0.02 3.07 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -60.84 331.07 -0.41 -61.24 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.56 Total: 34.08 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 3.61 Total: -26.41 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -5.37 Total: -75.06 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -2.01 Total: -34.43 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -60.84 -0.41 -61.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473413849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.838 kcal (2) G-P(sol) polarization free energy of solvation -60.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds