Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00329 * 2 1 4 4 H 1.48501 * 109.46973 * 270.00105 * 3 2 1 5 5 H 1.48500 * 109.46968 * 29.99785 * 3 2 1 6 6 H 1.48504 * 109.47185 * 150.00014 * 3 2 1 7 7 C 1.37880 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00212 * 189.99958 * 10 9 7 12 12 C 1.50706 * 109.46896 * 75.82492 * 11 10 9 13 13 C 1.38179 * 119.95589 * 84.40753 * 12 11 10 14 14 C 1.38726 * 119.99134 * 179.97438 * 13 12 11 15 15 O 1.35902 * 120.04137 * 179.97438 * 14 13 12 16 16 C 1.38709 * 119.91665 * 359.95668 * 14 13 12 17 17 C 1.38343 * 119.91945 * 0.04075 * 16 14 13 18 18 F 1.35101 * 119.99704 * 180.02562 * 17 16 14 19 19 C 1.38204 * 119.96260 * 264.38763 * 12 11 10 20 20 C 1.46902 * 110.99716 * 66.04651 * 10 9 7 21 21 C 1.53006 * 109.46771 * 199.45346 * 20 10 9 22 22 C 1.52998 * 117.49795 * 243.55293 * 21 20 10 23 23 C 1.53002 * 117.49685 * 174.89182 * 21 20 10 24 24 H 0.97006 * 119.99581 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47298 * 60.00580 * 9 7 2 26 26 H 1.08994 * 109.47234 * 300.00084 * 9 7 2 27 27 H 1.08998 * 109.46883 * 315.83074 * 11 10 9 28 28 H 1.08997 * 109.47239 * 195.82580 * 11 10 9 29 29 H 1.08004 * 120.00359 * 359.72106 * 13 12 11 30 30 H 0.96699 * 114.00029 * 89.99729 * 15 14 13 31 31 H 1.08002 * 120.04141 * 180.02562 * 16 14 13 32 32 H 1.08004 * 119.95919 * 359.97438 * 19 12 11 33 33 H 1.08992 * 109.47354 * 319.45443 * 20 10 9 34 34 H 1.09000 * 109.47154 * 79.46297 * 20 10 9 35 35 H 1.08996 * 115.55111 * 29.22815 * 21 20 10 36 36 H 1.08997 * 117.50267 * 0.02562 * 22 21 20 37 37 H 1.08999 * 117.49621 * 145.02848 * 22 21 20 38 38 H 1.09000 * 117.49962 * 214.98090 * 23 21 20 39 39 H 1.08999 * 117.49821 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5210 -4.8936 -0.2387 12 6 1.1644 -5.0079 -1.6984 13 6 2.0982 -5.4777 -2.6021 14 6 1.7705 -5.5837 -3.9459 15 8 2.6883 -6.0451 -4.8357 16 6 0.5048 -5.2187 -4.3803 17 6 -0.4274 -4.7489 -3.4724 18 9 -1.6609 -4.3933 -3.8937 19 6 -0.0964 -4.6433 -2.1316 20 6 2.9708 -3.6541 1.2528 21 6 4.2449 -4.4759 1.0474 22 6 4.3941 -5.7631 1.8609 23 6 5.2413 -4.5361 2.2069 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 0.6123 -4.9363 0.3617 28 1 2.1797 -5.7161 0.0400 29 1 3.0844 -5.7583 -2.2629 30 1 2.6695 -7.0041 -4.9586 31 1 0.2474 -5.3008 -5.4260 32 1 -0.8250 -4.2771 -1.4234 33 1 3.2367 -2.6390 1.5473 34 1 2.3650 -4.1124 2.0345 35 1 4.6500 -4.4702 0.0355 36 1 3.5844 -6.0248 2.5421 37 1 4.8977 -6.6041 1.3843 38 1 6.3019 -4.5703 1.9578 39 1 4.9890 -3.9905 3.1162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186214590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = -37.336885 kcal Electronic energy + Delta-G solvation = -21635.911790 eV Core-core repulsion = 18265.902616 eV Total energy + Delta-G solvation = -3370.009174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.64107 -39.58027 -37.93857 -36.68516 -35.19840 -32.59340 -31.01364 -29.50279 -27.50621 -26.68901 -24.09742 -22.48557 -22.20493 -21.72095 -20.60309 -19.72544 -18.10756 -16.68039 -16.39209 -16.26857 -15.93766 -15.46144 -15.29995 -14.82647 -14.50603 -14.18889 -13.94978 -13.74550 -13.47757 -12.94963 -12.32565 -12.10389 -11.84278 -11.67875 -11.56694 -11.32615 -11.28416 -11.09565 -10.91848 -10.66107 -10.58656 -10.52348 -10.13104 -9.69291 -9.53870 -9.19241 -8.55474 -8.45251 -8.35337 -7.33525 -6.02865 -4.03666 1.32232 1.38020 3.32932 3.39062 3.42022 3.65365 4.03901 4.09910 4.43517 4.63764 4.80185 4.96276 5.15782 5.22615 5.23333 5.29562 5.33556 5.45902 5.58352 5.63953 5.78738 5.85407 5.92813 6.00967 6.09443 6.24251 6.26354 6.30050 6.31851 6.44703 6.47412 6.74967 6.79295 6.97427 7.25995 7.29523 7.66833 7.79014 8.06210 8.16331 8.50774 9.03606 9.60380 11.07988 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.006810 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.760099 B = 4110.449603 C = 5935.215923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.190 3.810 10 N -0.528 5.528 11 C 0.089 3.911 12 C -0.013 4.013 13 C -0.132 4.132 14 C 0.125 3.875 15 O -0.495 6.495 16 C -0.191 4.191 17 C 0.113 3.887 18 F -0.140 7.140 19 C -0.144 4.144 20 C 0.091 3.909 21 C -0.133 4.133 22 C -0.192 4.192 23 C -0.183 4.183 24 H 0.261 0.739 25 H 0.037 0.963 26 H -0.010 1.010 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.387 0.613 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -14.666 -2.373 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.252 5.252 11 C -0.039 4.039 12 C -0.014 4.014 13 C -0.151 4.151 14 C 0.081 3.919 15 O -0.304 6.304 16 C -0.210 4.210 17 C 0.094 3.906 18 F -0.118 7.118 19 C -0.164 4.164 20 C -0.037 4.037 21 C -0.152 4.152 22 C -0.229 4.229 23 C -0.221 4.221 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.008 0.992 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.151 0.849 30 H 0.243 0.757 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.137 -13.842 -2.806 14.717 hybrid contribution -0.525 0.513 0.473 0.873 sum 3.612 -13.329 -2.333 14.006 Atomic orbital electron populations 1.69952 1.06026 1.26767 1.50921 1.24969 0.94843 0.99250 0.95432 0.86532 0.79726 0.83205 0.78172 1.20641 1.21346 1.19826 1.21145 0.93529 0.89863 1.50092 0.91783 1.19826 0.90163 0.87224 0.96306 1.62049 1.27684 1.01858 1.33610 1.21049 0.97851 0.94682 0.90363 1.19544 0.91551 0.93830 0.96479 1.21252 1.00036 1.02366 0.91473 1.18034 0.87238 0.98576 0.88047 1.84857 1.56098 1.27392 1.62087 1.21206 0.93319 1.06282 1.00210 1.17375 0.80473 1.00077 0.92697 1.91491 1.39989 1.89675 1.90690 1.21173 0.98567 1.02350 0.94288 1.21605 0.91453 1.00421 0.90211 1.22476 0.98148 0.98111 0.96439 1.23042 1.03198 0.92146 1.04553 1.22904 0.96804 1.01946 1.00422 0.92935 0.94519 0.99200 0.94349 0.90449 0.84926 0.75731 0.84762 0.84496 0.88869 0.95919 0.87321 0.89363 0.89514 0.89288 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.06 8.24 -34.44 -0.28 -14.34 16 8 H 0.06 1.76 7.31 -52.49 -0.38 1.38 16 9 C 0.19 4.78 4.54 -4.98 -0.02 4.75 16 10 N -0.53 -10.74 4.35 -237.52 -1.03 -11.78 16 11 C 0.09 1.50 4.95 -4.97 -0.02 1.47 16 12 C -0.01 -0.22 5.03 -104.65 -0.53 -0.75 16 13 C -0.13 -2.00 9.66 -39.42 -0.38 -2.38 16 14 C 0.13 1.80 6.70 -39.23 -0.26 1.54 16 15 O -0.49 -6.02 13.50 -19.43 -0.26 -6.28 16 16 C -0.19 -2.82 9.97 -39.37 -0.39 -3.22 16 17 C 0.11 1.88 7.30 -39.44 -0.29 1.59 16 18 F -0.14 -2.38 17.27 2.25 0.04 -2.34 16 19 C -0.14 -2.50 8.38 -39.49 -0.33 -2.83 16 20 C 0.09 1.67 5.07 -3.82 -0.02 1.65 16 21 C -0.13 -2.00 5.15 -90.62 -0.47 -2.46 16 22 C -0.19 -2.37 10.09 -26.69 -0.27 -2.64 16 23 C -0.18 -2.36 10.26 -26.69 -0.27 -2.64 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.04 0.99 6.33 -51.93 -0.33 0.66 16 26 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 27 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 28 H 0.08 1.13 7.19 -51.93 -0.37 0.75 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.39 2.50 9.06 45.56 0.41 2.92 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.14 2.42 7.99 -52.48 -0.42 2.00 16 33 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 34 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 35 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -30.91 333.28 -8.91 -39.82 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.76 Total: 3.38 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -3.64 Total: -18.75 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.30 Total: -37.59 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.26 Total: -6.28 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.91 -8.91 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186214590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.486 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds