Wall clock time and date at job start Wed Apr 15 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48500 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47199 * 300.00155 * 3 2 1 6 6 H 1.48503 * 109.46820 * 60.00300 * 3 2 1 7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.43164 * 57.46464 * 9 7 2 11 11 C 1.54268 * 110.48760 * 294.77471 * 9 7 2 12 12 C 1.53876 * 106.59992 * 217.71212 * 11 9 7 13 13 C 1.54268 * 106.59607 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.48471 * 264.93239 * 13 12 11 15 15 N 1.46902 * 110.48391 * 142.29090 * 13 12 11 16 16 C 1.46901 * 111.00232 * 90.22131 * 15 13 12 17 17 C 1.50696 * 109.47071 * 179.97438 * 16 15 13 18 18 C 1.38168 * 119.96263 * 269.72892 * 17 16 15 19 19 C 1.38728 * 119.99493 * 179.73002 * 18 17 16 20 20 O 1.35901 * 120.04212 * 180.26941 * 19 18 17 21 21 C 1.38705 * 119.91527 * 0.52079 * 19 18 17 22 22 C 1.38343 * 119.92078 * 359.75253 * 21 19 18 23 23 F 1.35096 * 120.00168 * 179.97438 * 22 21 19 24 24 C 1.38210 * 119.95838 * 90.00308 * 17 16 15 25 25 C 1.54882 * 104.19992 * 23.60931 * 13 12 11 26 26 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.02839 * 337.00222 * 11 9 7 28 28 H 1.09002 * 110.02428 * 98.42549 * 11 9 7 29 29 H 1.08994 * 110.02975 * 119.28475 * 12 11 9 30 30 H 1.08998 * 110.02933 * 240.72065 * 12 11 9 31 31 H 1.00898 * 110.99693 * 326.26950 * 15 13 12 32 32 H 1.08998 * 109.46796 * 300.00187 * 16 15 13 33 33 H 1.09003 * 109.47003 * 59.99890 * 16 15 13 34 34 H 1.08001 * 120.00056 * 359.97438 * 18 17 16 35 35 H 0.96701 * 114.00184 * 270.24977 * 20 19 18 36 36 H 1.08004 * 120.04065 * 179.72725 * 21 19 18 37 37 H 1.08001 * 119.95736 * 359.97438 * 24 17 16 38 38 H 1.08994 * 110.76048 * 203.74464 * 25 13 12 39 39 H 1.09004 * 110.75771 * 80.36858 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5845 -2.5538 -0.8614 11 6 0.4570 -2.6643 1.3118 12 6 0.5417 -4.1527 1.6926 13 6 1.3848 -4.8401 0.5987 14 1 0.7387 -5.2741 -0.1644 15 7 2.2503 -5.8704 1.1881 16 6 1.5726 -7.1734 1.2178 17 6 2.4894 -8.2026 1.8269 18 6 3.3429 -8.9303 1.0201 19 6 4.1912 -9.8740 1.5808 20 8 5.0350 -10.5863 0.7887 21 6 4.1732 -10.0932 2.9503 22 6 3.3132 -9.3667 3.7543 23 9 3.2940 -9.5793 5.0883 24 6 2.4713 -8.4216 3.1915 25 6 2.2370 -3.6940 -0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 0.9014 -2.0521 2.0965 28 1 -0.5831 -2.3769 1.1575 29 1 1.0273 -4.2630 2.6622 30 1 -0.4572 -4.5878 1.7232 31 1 2.5562 -5.6009 2.1110 32 1 0.6639 -7.0968 1.8149 33 1 1.3154 -7.4724 0.2016 34 1 3.3525 -8.7615 -0.0466 35 1 4.6571 -11.4104 0.4524 36 1 4.8296 -10.8306 3.3884 37 1 1.8005 -7.8546 3.8199 38 1 2.5504 -3.9359 -1.0159 39 1 3.0998 -3.4831 0.6314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294963105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:07 Heat of formation + Delta-G solvation = -79.639473 kcal Electronic energy + Delta-G solvation = -20845.156109 eV Core-core repulsion = 17473.312557 eV Total energy + Delta-G solvation = -3371.843552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.13590 -40.00226 -38.04666 -36.97977 -34.41678 -32.32583 -30.76699 -29.95977 -28.05063 -27.08102 -24.88510 -23.33431 -22.93374 -21.70089 -19.70098 -19.04883 -18.49203 -16.99548 -16.89267 -16.41408 -16.29343 -15.83226 -15.41087 -14.91188 -14.72265 -14.37101 -14.01963 -13.86653 -13.38894 -12.97791 -12.47343 -12.37710 -12.17855 -12.03279 -11.63354 -11.58864 -11.11893 -11.04083 -10.95297 -10.64724 -10.46456 -10.14644 -9.86336 -9.54608 -9.18326 -9.04451 -8.88447 -8.70248 -8.35648 -8.03935 -5.98090 -3.99997 0.80909 0.87230 3.15275 3.31677 3.39879 3.44373 3.62064 4.13946 4.38920 4.47295 4.62530 4.73498 4.83394 5.04435 5.15033 5.32208 5.39192 5.49631 5.63198 5.66489 5.75861 5.78846 5.86113 5.99471 6.17772 6.24592 6.46493 6.48531 6.64623 6.73094 6.84237 7.03533 7.12749 7.28750 7.35402 7.46629 7.63095 7.73062 7.93261 8.05787 8.51016 9.03863 9.64036 11.11872 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.003035 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.610374 B = 9222.180973 C = 9462.454919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.046 3.954 10 H 0.030 0.970 11 C -0.095 4.095 12 C -0.152 4.152 13 C 0.080 3.920 14 H 0.073 0.927 15 N -0.677 5.677 16 C 0.094 3.906 17 C -0.030 4.030 18 C -0.132 4.132 19 C 0.133 3.867 20 O -0.494 6.494 21 C -0.187 4.187 22 C 0.115 3.885 23 F -0.138 7.138 24 C -0.157 4.157 25 C -0.099 4.099 26 H 0.258 0.742 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.341 0.659 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.393 0.607 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.048 0.952 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -21.388 4.383 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.048 0.952 11 C -0.134 4.134 12 C -0.192 4.192 13 C -0.029 4.029 14 H 0.091 0.909 15 N -0.307 5.307 16 C -0.035 4.035 17 C -0.030 4.030 18 C -0.151 4.151 19 C 0.089 3.911 20 O -0.304 6.304 21 C -0.207 4.207 22 C 0.095 3.905 23 F -0.117 7.117 24 C -0.177 4.177 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.159 0.841 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.249 0.751 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.067 0.933 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.993 -20.944 3.947 21.684 hybrid contribution -0.537 0.651 1.023 1.326 sum 3.456 -20.293 4.970 21.177 Atomic orbital electron populations 1.69981 1.05882 1.26236 1.50916 1.24995 0.94828 0.99026 0.95246 0.86602 0.80266 0.84056 0.77478 1.19759 1.21112 1.21164 1.21219 0.92888 0.90496 1.50238 0.92569 1.19470 0.92566 0.91797 0.93415 0.95221 1.22040 1.00875 0.90425 1.00017 1.22947 0.98574 1.00020 0.97627 1.22613 0.93280 0.91184 0.95844 0.90865 1.60749 1.40605 1.01223 1.28171 1.20959 0.93324 0.88643 1.00580 1.19605 0.96042 0.95392 0.91990 1.21409 0.95269 0.97056 1.01416 1.18093 0.90569 0.94061 0.88404 1.84850 1.40281 1.38419 1.66863 1.21322 1.01814 1.03602 0.93915 1.17374 0.98033 0.97723 0.77345 1.91512 1.95638 1.93978 1.30523 1.21114 1.01377 0.99487 0.95701 1.22544 0.98501 0.94010 0.98668 0.93238 0.93101 0.92921 0.93363 0.93743 0.84078 0.93992 0.89799 0.84371 0.75074 0.84354 0.84563 0.93280 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 12.63 55.43 0.70 -24.99 16 2 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.00 8.36 -34.44 -0.29 -14.29 16 8 H 0.06 1.54 7.77 -52.48 -0.41 1.13 16 9 C 0.05 1.14 2.73 -90.10 -0.25 0.89 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.17 5.60 -25.61 -0.14 -2.31 16 12 C -0.15 -2.72 6.50 -25.61 -0.17 -2.89 16 13 C 0.08 1.35 3.18 -66.06 -0.21 1.14 16 14 H 0.07 1.21 7.83 -51.93 -0.41 0.80 16 15 N -0.68 -9.71 6.35 -106.24 -0.67 -10.39 16 16 C 0.09 1.08 5.67 -4.98 -0.03 1.06 16 17 C -0.03 -0.32 5.39 -104.66 -0.56 -0.88 16 18 C -0.13 -1.37 9.64 -39.43 -0.38 -1.75 16 19 C 0.13 1.32 6.70 -39.23 -0.26 1.06 16 20 O -0.49 -4.21 13.50 -19.43 -0.26 -4.47 16 21 C -0.19 -1.85 9.97 -39.37 -0.39 -2.24 16 22 C 0.11 1.24 7.30 -39.44 -0.29 0.95 16 23 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 24 C -0.16 -1.67 9.68 -39.49 -0.38 -2.06 16 25 C -0.10 -2.03 5.96 -24.73 -0.15 -2.17 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 1.24 7.83 -51.93 -0.41 0.84 16 28 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.05 0.80 7.52 -51.93 -0.39 0.41 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.34 4.85 8.06 -39.29 -0.32 4.53 16 32 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.08 0.92 8.02 -51.93 -0.42 0.50 16 34 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.39 1.27 9.06 45.56 0.41 1.68 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -30.03 329.80 -8.70 -38.73 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.86 Total: 3.22 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.59 Total: -21.92 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.03 Total: -35.37 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.26 Total: -4.47 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.03 -8.70 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294963105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.911 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds