Wall clock time and date at job start Wed Apr 15 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48500 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47199 * 300.00155 * 3 2 1 6 6 H 1.48503 * 109.46820 * 60.00300 * 3 2 1 7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.43164 * 57.46464 * 9 7 2 11 11 C 1.54268 * 110.48760 * 294.77471 * 9 7 2 12 12 C 1.53876 * 106.59992 * 217.71212 * 11 9 7 13 13 C 1.54268 * 106.59607 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.48471 * 264.93239 * 13 12 11 15 15 N 1.46902 * 110.48391 * 142.29090 * 13 12 11 16 16 C 1.46901 * 111.00232 * 90.22131 * 15 13 12 17 17 C 1.50696 * 109.47071 * 179.97438 * 16 15 13 18 18 C 1.38168 * 119.96263 * 269.72892 * 17 16 15 19 19 C 1.38728 * 119.99493 * 179.73002 * 18 17 16 20 20 O 1.35901 * 120.04212 * 180.26941 * 19 18 17 21 21 C 1.38705 * 119.91527 * 0.52079 * 19 18 17 22 22 C 1.38343 * 119.92078 * 359.75253 * 21 19 18 23 23 F 1.35096 * 120.00168 * 179.97438 * 22 21 19 24 24 C 1.38210 * 119.95838 * 90.00308 * 17 16 15 25 25 C 1.54882 * 104.19992 * 23.60931 * 13 12 11 26 26 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.02839 * 337.00222 * 11 9 7 28 28 H 1.09002 * 110.02428 * 98.42549 * 11 9 7 29 29 H 1.08994 * 110.02975 * 119.28475 * 12 11 9 30 30 H 1.08998 * 110.02933 * 240.72065 * 12 11 9 31 31 H 1.00898 * 110.99693 * 326.26950 * 15 13 12 32 32 H 1.08998 * 109.46796 * 300.00187 * 16 15 13 33 33 H 1.09003 * 109.47003 * 59.99890 * 16 15 13 34 34 H 1.08001 * 120.00056 * 359.97438 * 18 17 16 35 35 H 0.96701 * 114.00184 * 270.24977 * 20 19 18 36 36 H 1.08004 * 120.04065 * 179.72725 * 21 19 18 37 37 H 1.08001 * 119.95736 * 359.97438 * 24 17 16 38 38 H 1.08994 * 110.76048 * 203.74464 * 25 13 12 39 39 H 1.09004 * 110.75771 * 80.36858 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5845 -2.5538 -0.8614 11 6 0.4570 -2.6643 1.3118 12 6 0.5417 -4.1527 1.6926 13 6 1.3848 -4.8401 0.5987 14 1 0.7387 -5.2741 -0.1644 15 7 2.2503 -5.8704 1.1881 16 6 1.5726 -7.1734 1.2178 17 6 2.4894 -8.2026 1.8269 18 6 3.3429 -8.9303 1.0201 19 6 4.1912 -9.8740 1.5808 20 8 5.0350 -10.5863 0.7887 21 6 4.1732 -10.0932 2.9503 22 6 3.3132 -9.3667 3.7543 23 9 3.2940 -9.5793 5.0883 24 6 2.4713 -8.4216 3.1915 25 6 2.2370 -3.6940 -0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 0.9014 -2.0521 2.0965 28 1 -0.5831 -2.3769 1.1575 29 1 1.0273 -4.2630 2.6622 30 1 -0.4572 -4.5878 1.7232 31 1 2.5562 -5.6009 2.1110 32 1 0.6639 -7.0968 1.8149 33 1 1.3154 -7.4724 0.2016 34 1 3.3525 -8.7615 -0.0466 35 1 4.6571 -11.4104 0.4524 36 1 4.8296 -10.8306 3.3884 37 1 1.8005 -7.8546 3.8199 38 1 2.5504 -3.9359 -1.0159 39 1 3.0998 -3.4831 0.6314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294963105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:06 Heat of formation + Delta-G solvation = -99.000653 kcal Electronic energy + Delta-G solvation = -20845.995673 eV Core-core repulsion = 17473.312557 eV Total energy + Delta-G solvation = -3372.683116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.96351 -40.76621 -39.41858 -37.86059 -35.78078 -34.10123 -31.88535 -30.72144 -29.79279 -28.52029 -26.30245 -24.96149 -23.69513 -22.53281 -21.13013 -20.91117 -19.26975 -18.33532 -17.77749 -17.66069 -17.15957 -16.73729 -16.64067 -16.57932 -15.86132 -15.61982 -15.37565 -14.78048 -14.46448 -14.37111 -14.00414 -13.59989 -13.47262 -13.17013 -12.94618 -12.89016 -12.64164 -12.41832 -12.33103 -12.23740 -11.90039 -11.64195 -11.56418 -11.33709 -10.94530 -10.72932 -10.47025 -9.89982 -9.65412 -9.21751 -8.11157 -6.19847 0.06018 0.08799 1.39665 1.41791 1.53266 2.38607 2.44590 2.90272 3.19769 3.37048 3.45131 3.69845 3.96087 4.03363 4.07459 4.10624 4.26724 4.29861 4.41360 4.61359 4.73245 4.80240 4.88791 4.97467 5.02602 5.05305 5.07730 5.19677 5.24710 5.26880 5.43536 5.46666 5.47173 5.67861 5.75608 5.94596 6.01059 6.19366 6.42187 6.50766 6.81604 6.92361 7.47488 8.98120 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.003035 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.610374 B = 9222.180973 C = 9462.454919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.036 3.964 10 H 0.000 1.000 11 C -0.087 4.087 12 C -0.140 4.140 13 C 0.097 3.903 14 H 0.083 0.917 15 N -0.679 5.679 16 C 0.097 3.903 17 C -0.034 4.034 18 C -0.137 4.137 19 C 0.137 3.863 20 O -0.503 6.503 21 C -0.187 4.187 22 C 0.102 3.898 23 F -0.144 7.144 24 C -0.161 4.161 25 C -0.091 4.091 26 H 0.259 0.741 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.343 0.657 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.416 0.584 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.049 0.951 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 -22.848 4.643 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.017 3.983 10 H 0.018 0.982 11 C -0.126 4.126 12 C -0.180 4.180 13 C -0.012 4.012 14 H 0.101 0.899 15 N -0.309 5.309 16 C -0.032 4.032 17 C -0.035 4.035 18 C -0.157 4.157 19 C 0.092 3.908 20 O -0.317 6.317 21 C -0.207 4.207 22 C 0.083 3.917 23 F -0.123 7.123 24 C -0.180 4.180 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.162 0.838 35 H 0.276 0.724 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.068 0.932 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.756 -22.441 4.203 23.322 hybrid contribution -0.736 1.043 0.903 1.564 sum 4.020 -21.399 5.106 22.364 Atomic orbital electron populations 1.70098 1.07191 1.27007 1.51774 1.25763 0.95666 1.02388 0.95038 0.85610 0.79188 0.79964 0.77543 1.19140 1.20641 1.20737 1.21600 0.92933 0.92192 1.49996 0.93076 1.19464 0.93133 0.92655 0.93025 0.98212 1.21821 0.98537 0.93834 0.98397 1.22836 1.00238 0.96183 0.98699 1.22297 0.92520 0.90796 0.95629 0.89859 1.60619 1.40296 1.01621 1.28377 1.20983 0.93579 0.87106 1.01489 1.19505 0.96369 0.95605 0.92045 1.21544 0.95262 0.97092 1.01756 1.18097 0.90222 0.94008 0.88511 1.84795 1.40481 1.39742 1.66669 1.21496 1.01629 1.03558 0.93985 1.17519 0.98693 0.98322 0.77215 1.91494 1.95740 1.94079 1.31002 1.21211 1.01474 0.99518 0.95804 1.22369 0.97663 0.93921 0.99019 0.93212 0.95545 0.95483 0.91743 0.91825 0.83836 0.92966 0.88936 0.83819 0.72383 0.83055 0.83831 0.93195 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 12.63 21.45 0.27 -54.03 16 2 C 0.01 0.55 5.35 84.66 0.45 1.01 16 3 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.53 -29.63 8.36 25.60 0.21 -29.42 16 8 H 0.05 2.84 7.77 -2.91 -0.02 2.81 16 9 C 0.04 1.81 2.73 -10.45 -0.03 1.79 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.09 -4.04 5.60 31.32 0.18 -3.87 16 12 C -0.14 -4.79 6.50 31.32 0.20 -4.58 16 13 C 0.10 3.11 3.18 45.99 0.15 3.26 16 14 H 0.08 2.54 7.83 -2.39 -0.02 2.52 16 15 N -0.68 -17.82 6.35 -490.04 -3.11 -20.93 16 16 C 0.10 1.96 5.67 85.56 0.49 2.45 16 17 C -0.03 -0.67 5.39 -19.89 -0.11 -0.77 16 18 C -0.14 -2.54 9.64 22.37 0.22 -2.33 16 19 C 0.14 2.39 6.70 22.50 0.15 2.54 16 20 O -0.50 -7.33 13.50 -92.44 -1.25 -8.57 16 21 C -0.19 -3.34 9.97 22.41 0.22 -3.11 16 22 C 0.10 2.04 7.30 22.36 0.16 2.20 16 23 F -0.14 -3.12 17.27 44.97 0.78 -2.34 16 24 C -0.16 -3.10 9.68 22.33 0.22 -2.89 16 25 C -0.09 -3.71 5.96 31.89 0.19 -3.52 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 28 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 29 H 0.06 2.00 7.52 -2.39 -0.02 1.98 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.34 8.91 8.06 -89.70 -0.72 8.19 16 32 H 0.05 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.09 1.74 8.02 -2.39 -0.02 1.72 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.42 1.58 9.06 -74.06 -0.67 0.91 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 2.16 8.05 -2.38 -0.02 2.14 16 Total: -1.00 -64.95 329.80 1.09 -63.86 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.33 Total: 12.88 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 2.70 Total: -37.24 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -2.84 Total: -74.97 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -1.25 Total: -8.57 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.95 1.09 -63.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294963105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.137 kcal (2) G-P(sol) polarization free energy of solvation -64.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds