Wall clock time and date at job start Wed Apr 15 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47359 * 274.97571 * 3 2 1 5 5 H 1.48494 * 109.47391 * 34.97829 * 3 2 1 6 6 H 1.48498 * 109.47346 * 154.97732 * 3 2 1 7 7 C 1.39849 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00400 * 153.06075 * 7 2 1 9 9 C 1.41114 * 119.99566 * 333.06094 * 7 2 1 10 10 C 1.40908 * 120.14905 * 159.27029 * 9 7 2 11 11 C 1.36307 * 119.83534 * 180.02562 * 10 9 7 12 12 C 1.39599 * 120.16174 * 0.02562 * 11 10 9 13 13 N 1.38811 * 119.84768 * 179.97438 * 12 11 10 14 14 C 1.39595 * 120.00246 * 147.71413 * 13 12 11 15 15 C 1.38986 * 120.07812 * 339.59325 * 14 13 12 16 16 C 1.38067 * 119.91560 * 180.02562 * 15 14 13 17 17 C 1.38321 * 120.08525 * 359.97438 * 16 15 14 18 18 C 1.38286 * 120.15720 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.96035 * 179.97438 * 18 17 16 20 20 C 1.52997 * 117.49798 * 8.63900 * 19 18 17 21 21 C 1.53001 * 60.00228 * 252.51520 * 20 19 18 22 22 C 1.38110 * 120.08009 * 359.97438 * 18 17 16 23 23 C 1.39607 * 120.31209 * 0.25546 * 12 11 10 24 24 C 1.36321 * 120.15476 * 359.47800 * 23 12 11 25 25 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.08116 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.91838 * 179.97438 * 11 10 9 28 28 H 0.96996 * 119.99959 * 327.71275 * 13 12 11 29 29 H 1.07993 * 120.04636 * 359.97438 * 15 14 13 30 30 H 1.08006 * 119.95587 * 179.72339 * 16 15 14 31 31 H 1.08000 * 119.92324 * 179.97438 * 17 16 15 32 32 H 1.08998 * 115.54959 * 154.35168 * 19 18 17 33 33 H 1.09004 * 117.49949 * 0.02562 * 20 19 18 34 34 H 1.09003 * 117.50066 * 145.02050 * 20 19 18 35 35 H 1.09003 * 117.49531 * 252.51235 * 21 20 19 36 36 H 1.08991 * 117.51837 * 107.47960 * 21 20 19 37 37 H 1.07998 * 120.03983 * 180.02562 * 22 18 17 38 38 H 1.07998 * 119.92681 * 179.74520 * 23 12 11 39 39 H 1.07998 * 120.08009 * 180.23370 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3854 2.1072 -1.3948 5 1 1.4971 2.6200 0.8026 6 1 3.5892 1.4122 0.5922 7 6 2.0084 -1.2111 0.0005 8 1 3.0005 -1.2620 -0.4231 9 6 1.4177 -2.3666 0.5547 10 6 1.8856 -3.6448 0.1904 11 6 1.3100 -4.7567 0.7292 12 6 0.2591 -4.6313 1.6395 13 7 -0.3227 -5.7680 2.1839 14 6 -0.8328 -5.7373 3.4829 15 6 -0.4064 -4.7612 4.3758 16 6 -0.9127 -4.7343 5.6600 17 6 -1.8435 -5.6767 6.0583 18 6 -2.2700 -6.6493 5.1726 19 6 -3.2839 -7.6743 5.6114 20 6 -3.9525 -7.4690 6.9721 21 6 -2.9121 -8.5760 6.7902 22 6 -1.7680 -6.6825 3.8864 23 6 -0.2135 -3.3683 2.0006 24 6 0.3563 -2.2475 1.4737 25 1 -0.4850 0.8400 0.0004 26 1 2.6983 -3.7433 -0.5141 27 1 1.6673 -5.7371 0.4506 28 1 -0.3749 -6.5837 1.6616 29 1 0.3207 -4.0253 4.0658 30 1 -0.5784 -3.9788 6.3557 31 1 -2.2375 -5.6534 7.0636 32 1 -3.8867 -8.1103 4.8147 33 1 -3.6594 -6.5924 7.5498 34 1 -4.9956 -7.7699 7.0710 35 1 -3.2707 -9.6052 6.7693 36 1 -1.9341 -8.4281 7.2481 37 1 -2.1019 -7.4421 3.1951 38 1 -1.0296 -3.2786 2.7023 39 1 -0.0077 -1.2710 1.7568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176724445.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:38 Heat of formation + Delta-G solvation = 69.550433 kcal Electronic energy + Delta-G solvation = -20056.456811 eV Core-core repulsion = 17121.851844 eV Total energy + Delta-G solvation = -2934.604967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.67964 -38.13526 -36.68105 -34.76382 -33.15079 -30.67621 -29.76405 -29.40270 -27.92043 -24.86492 -23.38119 -22.69466 -22.10432 -20.96299 -20.77176 -19.37597 -17.41487 -16.90120 -16.53843 -15.56779 -15.39060 -15.19746 -14.39344 -14.02855 -13.87389 -13.51434 -13.14905 -12.86779 -12.53478 -12.20071 -12.04553 -11.95415 -11.74285 -11.51606 -11.24430 -11.15199 -10.96199 -10.92683 -10.65066 -10.48728 -10.41516 -9.92175 -9.81540 -9.41863 -9.05394 -8.32344 -7.87099 -7.61283 -6.94758 -6.50830 -4.25539 1.72055 1.86338 2.75198 2.99513 3.04637 3.07655 3.19821 3.75133 3.88457 4.10127 4.29992 4.53666 4.63975 4.83781 4.96746 5.15273 5.32663 5.44572 5.58924 5.63965 5.70639 5.74843 5.95894 6.01727 6.03178 6.14236 6.18175 6.25675 6.36537 6.77921 6.81005 6.85776 6.95996 7.00645 7.01416 7.17517 7.27712 7.50591 7.53204 7.73526 7.97667 8.13561 8.31919 8.46796 8.58121 8.82671 8.94625 10.06189 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.003414 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.709158 B = 8198.608471 C = 8704.249880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.101 3.899 10 C -0.213 4.213 11 C -0.110 4.110 12 C 0.012 3.988 13 N -0.670 5.670 14 C 0.219 3.781 15 C -0.182 4.182 16 C -0.078 4.078 17 C -0.187 4.187 18 C -0.018 4.018 19 C -0.112 4.112 20 C -0.178 4.178 21 C -0.172 4.172 22 C -0.194 4.194 23 C -0.115 4.115 24 C -0.156 4.156 25 H 0.282 0.718 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.394 0.606 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -9.497 9.494 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.098 3.902 10 C -0.234 4.234 11 C -0.131 4.131 12 C -0.082 4.082 13 N -0.288 5.288 14 C 0.115 3.885 15 C -0.204 4.204 16 C -0.097 4.097 17 C -0.207 4.207 18 C -0.018 4.018 19 C -0.130 4.130 20 C -0.215 4.215 21 C -0.209 4.209 22 C -0.217 4.217 23 C -0.136 4.136 24 C -0.176 4.176 25 H 0.093 0.907 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.228 0.772 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.869 -9.193 9.417 14.032 hybrid contribution 0.231 0.463 -0.374 0.639 sum -4.638 -8.729 9.043 13.397 Atomic orbital electron populations 1.69920 1.07848 1.29632 1.32799 1.25929 0.94514 1.01490 0.91969 0.86425 0.81188 0.80812 0.79136 1.19534 1.19915 1.18239 1.19490 1.02256 0.92770 1.34406 0.90254 1.17588 0.91025 0.91871 0.89726 1.20486 1.04949 0.92267 1.05651 1.20035 0.95724 0.97240 1.00086 1.17105 1.00063 0.85537 1.05464 1.41654 1.62965 1.12757 1.11449 1.17819 0.91555 0.94327 0.84806 1.21090 1.03925 1.02210 0.93184 1.20848 0.95935 0.97558 0.95351 1.20650 1.02522 0.97957 0.99557 1.18696 0.95399 0.94569 0.93170 1.21010 1.00199 0.99868 0.91939 1.23046 0.97844 1.01022 0.99598 1.22994 1.00332 0.95625 1.01902 1.20326 1.01362 1.03038 0.96938 1.20377 0.99634 0.91773 1.01796 1.20830 1.00384 0.96884 0.99456 0.90675 0.88736 0.89304 0.77209 0.84987 0.86593 0.87008 0.87367 0.88255 0.88791 0.88819 0.88595 0.86805 0.88645 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.71 11.29 55.54 0.63 -19.09 16 2 C 0.08 1.99 4.94 -17.34 -0.09 1.90 16 3 Si 0.90 18.16 29.63 -169.99 -5.04 13.12 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.96 8.98 -37.89 -0.34 -12.30 16 8 H 0.08 1.98 7.97 -52.49 -0.42 1.56 16 9 C 0.10 2.63 5.60 -106.79 -0.60 2.03 16 10 C -0.21 -5.12 9.74 -39.27 -0.38 -5.50 16 11 C -0.11 -2.42 9.89 -39.77 -0.39 -2.81 16 12 C 0.01 0.26 5.97 -83.68 -0.50 -0.24 16 13 N -0.67 -12.29 5.43 -8.31 -0.05 -12.33 16 14 C 0.22 3.86 6.18 -83.78 -0.52 3.34 16 15 C -0.18 -3.25 7.77 -39.37 -0.31 -3.56 16 16 C -0.08 -1.20 10.04 -39.61 -0.40 -1.60 16 17 C -0.19 -2.65 9.30 -39.53 -0.37 -3.01 16 18 C -0.02 -0.25 5.61 -104.65 -0.59 -0.84 16 19 C -0.11 -1.27 6.04 -91.77 -0.55 -1.82 16 20 C -0.18 -1.70 9.86 -26.73 -0.26 -1.96 16 21 C -0.17 -1.64 10.16 -26.73 -0.27 -1.91 16 22 C -0.19 -2.99 9.62 -39.36 -0.38 -3.37 16 23 C -0.12 -2.69 7.46 -39.76 -0.30 -2.98 16 24 C -0.16 -3.97 8.70 -39.27 -0.34 -4.31 16 25 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 26 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 27 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.39 6.26 8.86 -40.82 -0.36 5.90 16 29 H 0.13 2.59 5.94 -52.49 -0.31 2.28 16 30 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.34 6.01 -52.49 -0.32 1.03 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.10 0.94 6.17 -51.93 -0.32 0.62 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.10 2.14 6.39 -52.49 -0.34 1.80 16 39 H 0.11 3.01 6.22 -52.49 -0.33 2.69 16 LS Contribution 324.18 15.07 4.89 4.89 Total: -1.00 -26.91 324.18 -11.06 -37.96 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -4.91 Total: 14.40 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: -6.58 Total: -38.95 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.58 Total: -31.42 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.04 Total: 13.12 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.91 -11.06 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176724445.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.514 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds