Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47359 * 274.97571 * 3 2 1 5 5 H 1.48494 * 109.47391 * 34.97829 * 3 2 1 6 6 H 1.48498 * 109.47346 * 154.97732 * 3 2 1 7 7 C 1.39849 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00400 * 153.06075 * 7 2 1 9 9 C 1.41114 * 119.99566 * 333.06094 * 7 2 1 10 10 C 1.40908 * 120.14905 * 159.27029 * 9 7 2 11 11 C 1.36307 * 119.83534 * 180.02562 * 10 9 7 12 12 C 1.39599 * 120.16174 * 0.02562 * 11 10 9 13 13 N 1.38811 * 119.84768 * 179.97438 * 12 11 10 14 14 C 1.39595 * 120.00246 * 147.71413 * 13 12 11 15 15 C 1.38986 * 120.07812 * 339.59325 * 14 13 12 16 16 C 1.38067 * 119.91560 * 180.02562 * 15 14 13 17 17 C 1.38321 * 120.08525 * 359.97438 * 16 15 14 18 18 C 1.38286 * 120.15720 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.96035 * 179.97438 * 18 17 16 20 20 C 1.52997 * 117.49798 * 8.63900 * 19 18 17 21 21 C 1.53001 * 60.00228 * 252.51520 * 20 19 18 22 22 C 1.38110 * 120.08009 * 359.97438 * 18 17 16 23 23 C 1.39607 * 120.31209 * 0.25546 * 12 11 10 24 24 C 1.36321 * 120.15476 * 359.47800 * 23 12 11 25 25 H 0.97000 * 120.00092 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.08116 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.91838 * 179.97438 * 11 10 9 28 28 H 0.96996 * 119.99959 * 327.71275 * 13 12 11 29 29 H 1.07993 * 120.04636 * 359.97438 * 15 14 13 30 30 H 1.08006 * 119.95587 * 179.72339 * 16 15 14 31 31 H 1.08000 * 119.92324 * 179.97438 * 17 16 15 32 32 H 1.08998 * 115.54959 * 154.35168 * 19 18 17 33 33 H 1.09004 * 117.49949 * 0.02562 * 20 19 18 34 34 H 1.09003 * 117.50066 * 145.02050 * 20 19 18 35 35 H 1.09003 * 117.49531 * 252.51235 * 21 20 19 36 36 H 1.08991 * 117.51837 * 107.47960 * 21 20 19 37 37 H 1.07998 * 120.03983 * 180.02562 * 22 18 17 38 38 H 1.07998 * 119.92681 * 179.74520 * 23 12 11 39 39 H 1.07998 * 120.08009 * 180.23370 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3854 2.1072 -1.3948 5 1 1.4971 2.6200 0.8026 6 1 3.5892 1.4122 0.5922 7 6 2.0084 -1.2111 0.0005 8 1 3.0005 -1.2620 -0.4231 9 6 1.4177 -2.3666 0.5547 10 6 1.8856 -3.6448 0.1904 11 6 1.3100 -4.7567 0.7292 12 6 0.2591 -4.6313 1.6395 13 7 -0.3227 -5.7680 2.1839 14 6 -0.8328 -5.7373 3.4829 15 6 -0.4064 -4.7612 4.3758 16 6 -0.9127 -4.7343 5.6600 17 6 -1.8435 -5.6767 6.0583 18 6 -2.2700 -6.6493 5.1726 19 6 -3.2839 -7.6743 5.6114 20 6 -3.9525 -7.4690 6.9721 21 6 -2.9121 -8.5760 6.7902 22 6 -1.7680 -6.6825 3.8864 23 6 -0.2135 -3.3683 2.0006 24 6 0.3563 -2.2475 1.4737 25 1 -0.4850 0.8400 0.0004 26 1 2.6983 -3.7433 -0.5141 27 1 1.6673 -5.7371 0.4506 28 1 -0.3749 -6.5837 1.6616 29 1 0.3207 -4.0253 4.0658 30 1 -0.5784 -3.9788 6.3557 31 1 -2.2375 -5.6534 7.0636 32 1 -3.8867 -8.1103 4.8147 33 1 -3.6594 -6.5924 7.5498 34 1 -4.9956 -7.7699 7.0710 35 1 -3.2707 -9.6052 6.7693 36 1 -1.9341 -8.4281 7.2481 37 1 -2.1019 -7.4421 3.1951 38 1 -1.0296 -3.2786 2.7023 39 1 -0.0077 -1.2710 1.7568 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176724445.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = 58.695558 kcal Electronic energy + Delta-G solvation = -20056.927514 eV Core-core repulsion = 17121.851844 eV Total energy + Delta-G solvation = -2935.075670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.99223 -39.61828 -37.91191 -36.26484 -34.84581 -32.01982 -31.48789 -31.00501 -29.44589 -26.57704 -24.57187 -23.83157 -23.09971 -22.63736 -22.35720 -20.65872 -19.28185 -18.10086 -18.06707 -17.03424 -16.80975 -16.43557 -15.77216 -15.53570 -15.16455 -14.95760 -14.55025 -14.40059 -14.09724 -13.87306 -13.60388 -13.30929 -12.98364 -12.97184 -12.78180 -12.59433 -12.38697 -12.09160 -11.98480 -11.71641 -11.58600 -11.42347 -11.25283 -11.03972 -10.84128 -9.58298 -9.50254 -9.37684 -8.75502 -8.11100 -6.15720 0.48602 0.54710 1.05847 1.12080 1.38296 1.49076 1.57259 2.20107 2.61648 2.69163 2.83064 3.26419 3.70924 3.74460 4.02204 4.07501 4.22131 4.26028 4.34553 4.39655 4.42622 4.54916 4.70166 4.85324 4.86408 4.96455 5.00980 5.10422 5.17330 5.20168 5.24272 5.31380 5.33188 5.48317 5.58758 5.67254 5.73476 5.80448 5.92230 6.06790 6.11967 6.29385 6.56612 6.75156 6.92890 6.98747 7.13393 8.27134 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.003414 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.709158 B = 8198.608471 C = 8704.249880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.041 3.959 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.068 3.932 10 C -0.224 4.224 11 C -0.114 4.114 12 C 0.033 3.967 13 N -0.670 5.670 14 C 0.196 3.804 15 C -0.207 4.207 16 C -0.082 4.082 17 C -0.181 4.181 18 C -0.017 4.017 19 C -0.133 4.133 20 C -0.170 4.170 21 C -0.162 4.162 22 C -0.192 4.192 23 C -0.120 4.120 24 C -0.176 4.176 25 H 0.290 0.710 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.407 0.593 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -11.127 11.074 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.066 3.934 10 C -0.244 4.244 11 C -0.135 4.135 12 C -0.062 4.062 13 N -0.292 5.292 14 C 0.095 3.905 15 C -0.229 4.229 16 C -0.101 4.101 17 C -0.200 4.200 18 C -0.017 4.017 19 C -0.151 4.151 20 C -0.206 4.206 21 C -0.199 4.199 22 C -0.215 4.215 23 C -0.141 4.141 24 C -0.196 4.196 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.139 0.861 28 H 0.243 0.757 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.914 -10.865 11.022 16.568 hybrid contribution 0.416 0.738 -0.684 1.089 sum -5.497 -10.127 10.338 15.481 Atomic orbital electron populations 1.69957 1.09286 1.30898 1.33730 1.26748 0.95202 1.04599 0.90990 0.85310 0.79476 0.76180 0.79500 1.18518 1.19055 1.18266 1.19710 1.02615 0.94116 1.36379 0.90466 1.17904 0.91913 0.93037 0.90583 1.20709 1.05388 0.92309 1.06006 1.20324 0.95337 0.98118 0.99734 1.17170 0.98952 0.86129 1.03950 1.41508 1.63395 1.12152 1.12144 1.18010 0.92692 0.95389 0.84428 1.21033 1.04686 1.02446 0.94738 1.21092 0.95972 0.98351 0.94680 1.20999 1.01302 0.96934 1.00768 1.19093 0.95236 0.94871 0.92542 1.21059 1.00491 1.00295 0.93247 1.23162 0.98878 1.01019 0.97590 1.23072 1.00318 0.96566 0.99916 1.20573 1.00384 1.02576 0.97937 1.20415 0.99683 0.92124 1.01831 1.20746 1.01382 0.96826 1.00601 0.89966 0.87894 0.86112 0.75674 0.87685 0.84901 0.84394 0.86476 0.88185 0.87029 0.86963 0.89022 0.85031 0.88407 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.87 11.29 21.81 0.25 -42.62 16 2 C 0.04 2.10 4.94 85.22 0.42 2.52 16 3 Si 0.97 38.14 29.63 68.60 2.03 40.17 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.09 8.98 23.37 0.21 -26.88 16 8 H 0.08 4.04 7.97 -2.92 -0.02 4.01 16 9 C 0.07 3.73 5.60 -21.27 -0.12 3.61 16 10 C -0.22 -11.01 9.74 22.47 0.22 -10.79 16 11 C -0.11 -5.00 9.89 22.15 0.22 -4.79 16 12 C 0.03 1.45 5.97 38.70 0.23 1.68 16 13 N -0.67 -24.14 5.43 -180.20 -0.98 -25.12 16 14 C 0.20 6.80 6.18 38.26 0.24 7.04 16 15 C -0.21 -7.45 7.77 22.41 0.17 -7.27 16 16 C -0.08 -2.45 10.04 22.25 0.22 -2.23 16 17 C -0.18 -4.66 9.30 22.30 0.21 -4.46 16 18 C -0.02 -0.43 5.61 -19.88 -0.11 -0.54 16 19 C -0.13 -2.55 6.04 -11.54 -0.07 -2.62 16 20 C -0.17 -2.57 9.86 30.59 0.30 -2.27 16 21 C -0.16 -2.49 10.16 30.60 0.31 -2.17 16 22 C -0.19 -5.57 9.62 22.41 0.22 -5.36 16 23 C -0.12 -5.79 7.46 22.15 0.17 -5.62 16 24 C -0.18 -9.43 8.70 22.47 0.20 -9.23 16 25 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 26 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 27 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.41 12.34 8.86 -92.71 -0.82 11.52 16 29 H 0.11 4.31 5.94 -2.91 -0.02 4.29 16 30 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.14 2.82 6.01 -2.91 -0.02 2.81 16 32 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 1.50 6.17 -2.39 -0.01 1.49 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.10 4.57 6.39 -2.91 -0.02 4.55 16 39 H 0.10 5.41 6.22 -2.91 -0.02 5.40 16 Total: -1.00 -60.18 324.18 4.58 -55.60 By element: Atomic # 1 Polarization: 41.10 SS G_CDS: 0.25 Total: 41.35 kcal Atomic # 6 Polarization: -72.42 SS G_CDS: 3.03 Total: -69.39 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.73 Total: -67.74 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -60.18 4.58 -55.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176724445.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.299 kcal (2) G-P(sol) polarization free energy of solvation -60.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds