Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48496 * 109.47386 * 270.00502 * 3 2 1 5 5 H 1.48505 * 109.46849 * 30.00453 * 3 2 1 6 6 H 1.48496 * 109.47292 * 150.00057 * 3 2 1 7 7 C 1.39937 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99322 * 162.32239 * 7 2 1 9 9 C 1.41401 * 120.00092 * 342.32378 * 7 2 1 10 10 C 1.40791 * 120.20895 * 154.06629 * 9 7 2 11 11 C 1.37651 * 119.89883 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32568 * 359.97438 * 11 10 9 13 13 C 1.39309 * 120.42120 * 0.04780 * 12 11 10 14 14 N 1.39723 * 119.95094 * 179.97438 * 13 12 11 15 15 C 1.39716 * 119.99840 * 331.51174 * 14 13 12 16 16 C 1.38946 * 120.07631 * 332.05278 * 15 14 13 17 17 C 1.38070 * 119.92535 * 179.72381 * 16 15 14 18 18 C 1.38316 * 120.07213 * 0.55682 * 17 16 15 19 19 C 1.38268 * 120.15343 * 359.72020 * 18 17 16 20 20 C 1.50703 * 119.95945 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.50090 * 8.63976 * 20 19 18 22 22 C 1.52995 * 117.49808 * 300.01772 * 20 19 18 23 23 C 1.38118 * 120.07781 * 0.02562 * 19 18 17 24 24 C 1.38334 * 120.09742 * 359.95039 * 13 12 11 25 25 H 0.96998 * 120.00485 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.04833 * 0.04880 * 10 9 7 27 27 H 1.08001 * 119.83989 * 180.02562 * 11 10 9 28 28 H 1.07993 * 119.78739 * 180.02562 * 12 11 10 29 29 H 0.96995 * 120.00074 * 151.50874 * 14 13 12 30 30 H 1.08006 * 120.03474 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.96602 * 180.29753 * 17 16 15 32 32 H 1.07999 * 119.92122 * 179.74659 * 18 17 16 33 33 H 1.09002 * 115.54833 * 154.35378 * 20 19 18 34 34 H 1.08998 * 117.50052 * 0.02562 * 21 20 19 35 35 H 1.09001 * 117.49652 * 145.02466 * 21 20 19 36 36 H 1.09002 * 117.49891 * 214.98272 * 22 20 19 37 37 H 1.09004 * 117.49992 * 359.97438 * 22 20 19 38 38 H 1.07996 * 120.04207 * 180.02562 * 23 19 18 39 39 H 1.07993 * 120.16526 * 180.29501 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0497 -1.2338 -0.2846 9 6 1.3510 -2.4077 0.3707 10 6 1.8072 -3.6473 -0.1166 11 6 1.1625 -4.8074 0.2485 12 6 0.0665 -4.7621 1.0943 13 6 -0.3966 -3.5429 1.5841 14 7 -1.5034 -3.5085 2.4362 15 6 -2.4839 -4.4998 2.3480 16 6 -2.7120 -5.1483 1.1405 17 6 -3.6778 -6.1315 1.0583 18 6 -4.4258 -6.4632 2.1735 19 6 -4.2055 -5.8159 3.3753 20 6 -5.0234 -6.1804 4.5874 21 6 -5.9354 -7.4043 4.4823 22 6 -6.5399 -5.9989 4.4969 23 6 -3.2373 -4.8350 3.4659 24 6 0.2381 -2.3663 1.2284 25 1 -0.4851 0.8400 0.0004 26 1 2.6619 -3.6879 -0.7757 27 1 1.5135 -5.7578 -0.1256 28 1 -0.4325 -5.6776 1.3754 29 1 -1.5910 -2.7964 3.0889 30 1 -2.1310 -4.8868 0.2683 31 1 -3.8523 -6.6393 0.1212 32 1 -5.1835 -7.2298 2.1054 33 1 -4.5499 -5.9862 5.5498 34 1 -5.9435 -7.9463 3.5367 35 1 -6.0619 -8.0158 5.3758 36 1 -7.0641 -5.6858 5.3998 37 1 -6.9459 -5.6155 3.5608 38 1 -3.0654 -4.3302 4.4049 39 1 -0.1170 -1.4210 1.6113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176725777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = 66.917434 kcal Electronic energy + Delta-G solvation = -20157.038355 eV Core-core repulsion = 17222.319212 eV Total energy + Delta-G solvation = -2934.719143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.68873 -38.06088 -36.65053 -34.58354 -33.33800 -30.67147 -29.65088 -29.47604 -27.11492 -25.31003 -23.60012 -22.67266 -22.05673 -20.92587 -20.79568 -19.37115 -17.43107 -16.77310 -16.32052 -15.53799 -15.38024 -14.78320 -14.60943 -14.36230 -13.96110 -13.45373 -13.13099 -12.93398 -12.46675 -12.37782 -12.13428 -11.78531 -11.75824 -11.46450 -11.13725 -11.08850 -10.93745 -10.67537 -10.57693 -10.48537 -10.41783 -9.99464 -9.77355 -9.51633 -9.14382 -8.36355 -7.94207 -7.42016 -6.80451 -6.36182 -4.40103 1.68263 1.79498 2.78602 3.03978 3.06069 3.09647 3.21237 3.73137 3.91740 4.04574 4.27302 4.61720 4.62955 4.82292 4.95258 5.11893 5.29728 5.41991 5.57654 5.66144 5.68027 5.73056 5.92058 5.99537 6.00422 6.10540 6.25243 6.32674 6.50610 6.73127 6.77101 6.83099 6.94462 7.02269 7.04401 7.19260 7.28302 7.36001 7.73696 7.83795 7.95496 8.04127 8.35238 8.44823 8.67161 8.87891 8.94757 10.17192 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.003644 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.541018 B = 7682.537239 C = 8281.394515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.131 3.869 10 C -0.241 4.241 11 C -0.074 4.074 12 C -0.271 4.271 13 C 0.176 3.824 14 N -0.685 5.685 15 C 0.214 3.786 16 C -0.166 4.166 17 C -0.085 4.085 18 C -0.176 4.176 19 C -0.024 4.024 20 C -0.112 4.112 21 C -0.178 4.178 22 C -0.171 4.171 23 C -0.181 4.181 24 C -0.200 4.200 25 H 0.280 0.720 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.400 0.600 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 -7.798 6.442 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.128 3.872 10 C -0.261 4.261 11 C -0.093 4.093 12 C -0.292 4.292 13 C 0.081 3.919 14 N -0.305 5.305 15 C 0.112 3.888 16 C -0.187 4.187 17 C -0.103 4.103 18 C -0.196 4.196 19 C -0.024 4.024 20 C -0.130 4.130 21 C -0.215 4.215 22 C -0.208 4.208 23 C -0.203 4.203 24 C -0.222 4.222 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.235 0.765 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.545 -7.669 6.336 13.786 hybrid contribution 0.309 1.122 0.194 1.180 sum -9.236 -6.547 6.530 13.069 Atomic orbital electron populations 1.69839 1.07531 1.29129 1.35183 1.25898 0.94702 1.01236 0.92240 0.86361 0.80690 0.80738 0.79232 1.19504 1.20159 1.18466 1.19545 0.98080 0.91141 1.40622 0.90353 1.17356 0.90045 0.92094 0.87729 1.20981 1.04620 0.92944 1.07533 1.20352 0.95210 0.96546 0.97172 1.20181 1.03427 0.94736 1.10899 1.17603 0.87154 0.94373 0.92721 1.42203 1.20860 1.27661 1.39794 1.17763 0.88527 0.89670 0.92816 1.21138 1.00590 0.99901 0.97112 1.20861 0.94947 0.96584 0.97952 1.20704 1.02863 1.03024 0.92974 1.18721 0.95169 0.95371 0.93162 1.21004 0.91468 1.02924 0.97622 1.23045 1.04122 0.90933 1.03408 1.23002 0.94741 0.99732 1.03355 1.20461 1.01090 1.01655 0.97131 1.20920 1.02418 0.94846 1.04005 0.90961 0.88978 0.89168 0.88780 0.76519 0.85013 0.86466 0.86855 0.87307 0.88281 0.88765 0.88766 0.88567 0.86584 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 11.05 55.55 0.61 -19.68 16 2 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.19 9.05 -37.74 -0.34 -12.53 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.13 3.45 5.56 -106.85 -0.59 2.86 16 10 C -0.24 -5.88 9.79 -38.83 -0.38 -6.26 16 11 C -0.07 -1.66 10.02 -39.69 -0.40 -2.06 16 12 C -0.27 -6.07 7.77 -39.08 -0.30 -6.37 16 13 C 0.18 4.03 5.99 -83.83 -0.50 3.53 16 14 N -0.68 -13.42 5.46 -8.45 -0.05 -13.47 16 15 C 0.21 3.86 6.00 -83.75 -0.50 3.36 16 16 C -0.17 -2.98 7.77 -39.38 -0.31 -3.29 16 17 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 18 C -0.18 -2.45 9.30 -39.54 -0.37 -2.81 16 19 C -0.02 -0.33 5.61 -104.65 -0.59 -0.92 16 20 C -0.11 -1.26 6.04 -91.77 -0.55 -1.82 16 21 C -0.18 -1.67 9.86 -26.73 -0.26 -1.93 16 22 C -0.17 -1.65 10.16 -26.74 -0.27 -1.92 16 23 C -0.18 -2.84 9.64 -39.38 -0.38 -3.22 16 24 C -0.20 -5.07 8.57 -38.67 -0.33 -5.40 16 25 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.09 2.00 6.39 -52.49 -0.34 1.67 16 29 H 0.40 7.12 8.88 -40.82 -0.36 6.75 16 30 H 0.13 2.62 6.38 -52.48 -0.34 2.28 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.11 1.32 6.01 -52.49 -0.32 1.00 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.91 6.17 -51.93 -0.32 0.59 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 3.08 6.27 -52.49 -0.33 2.75 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -27.33 324.82 -11.07 -38.40 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -4.93 Total: 15.03 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: -6.57 Total: -38.63 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.57 Total: -33.15 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.33 -11.07 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176725777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.316 kcal (2) G-P(sol) polarization free energy of solvation -27.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds