Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 120.00158 * 2 1 4 4 H 1.48496 * 109.47386 * 270.00502 * 3 2 1 5 5 H 1.48505 * 109.46849 * 30.00453 * 3 2 1 6 6 H 1.48496 * 109.47292 * 150.00057 * 3 2 1 7 7 C 1.39937 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99322 * 162.32239 * 7 2 1 9 9 C 1.41401 * 120.00092 * 342.32378 * 7 2 1 10 10 C 1.40791 * 120.20895 * 154.06629 * 9 7 2 11 11 C 1.37651 * 119.89883 * 180.02562 * 10 9 7 12 12 C 1.38519 * 120.32568 * 359.97438 * 11 10 9 13 13 C 1.39309 * 120.42120 * 0.04780 * 12 11 10 14 14 N 1.39723 * 119.95094 * 179.97438 * 13 12 11 15 15 C 1.39716 * 119.99840 * 331.51174 * 14 13 12 16 16 C 1.38946 * 120.07631 * 332.05278 * 15 14 13 17 17 C 1.38070 * 119.92535 * 179.72381 * 16 15 14 18 18 C 1.38316 * 120.07213 * 0.55682 * 17 16 15 19 19 C 1.38268 * 120.15343 * 359.72020 * 18 17 16 20 20 C 1.50703 * 119.95945 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.50090 * 8.63976 * 20 19 18 22 22 C 1.52995 * 117.49808 * 300.01772 * 20 19 18 23 23 C 1.38118 * 120.07781 * 0.02562 * 19 18 17 24 24 C 1.38334 * 120.09742 * 359.95039 * 13 12 11 25 25 H 0.96998 * 120.00485 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.04833 * 0.04880 * 10 9 7 27 27 H 1.08001 * 119.83989 * 180.02562 * 11 10 9 28 28 H 1.07993 * 119.78739 * 180.02562 * 12 11 10 29 29 H 0.96995 * 120.00074 * 151.50874 * 14 13 12 30 30 H 1.08006 * 120.03474 * 0.02562 * 16 15 14 31 31 H 1.08000 * 119.96602 * 180.29753 * 17 16 15 32 32 H 1.07999 * 119.92122 * 179.74659 * 18 17 16 33 33 H 1.09002 * 115.54833 * 154.35378 * 20 19 18 34 34 H 1.08998 * 117.50052 * 0.02562 * 21 20 19 35 35 H 1.09001 * 117.49652 * 145.02466 * 21 20 19 36 36 H 1.09002 * 117.49891 * 214.98272 * 22 20 19 37 37 H 1.09004 * 117.49992 * 359.97438 * 22 20 19 38 38 H 1.07996 * 120.04207 * 180.02562 * 23 19 18 39 39 H 1.07993 * 120.16526 * 180.29501 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0497 -1.2338 -0.2846 9 6 1.3510 -2.4077 0.3707 10 6 1.8072 -3.6473 -0.1166 11 6 1.1625 -4.8074 0.2485 12 6 0.0665 -4.7621 1.0943 13 6 -0.3966 -3.5429 1.5841 14 7 -1.5034 -3.5085 2.4362 15 6 -2.4839 -4.4998 2.3480 16 6 -2.7120 -5.1483 1.1405 17 6 -3.6778 -6.1315 1.0583 18 6 -4.4258 -6.4632 2.1735 19 6 -4.2055 -5.8159 3.3753 20 6 -5.0234 -6.1804 4.5874 21 6 -5.9354 -7.4043 4.4823 22 6 -6.5399 -5.9989 4.4969 23 6 -3.2373 -4.8350 3.4659 24 6 0.2381 -2.3663 1.2284 25 1 -0.4851 0.8400 0.0004 26 1 2.6619 -3.6879 -0.7757 27 1 1.5135 -5.7578 -0.1256 28 1 -0.4325 -5.6776 1.3754 29 1 -1.5910 -2.7964 3.0889 30 1 -2.1310 -4.8868 0.2683 31 1 -3.8523 -6.6393 0.1212 32 1 -5.1835 -7.2298 2.1054 33 1 -4.5499 -5.9862 5.5498 34 1 -5.9435 -7.9463 3.5367 35 1 -6.0619 -8.0158 5.3758 36 1 -7.0641 -5.6858 5.3998 37 1 -6.9459 -5.6155 3.5608 38 1 -3.0654 -4.3302 4.4049 39 1 -0.1170 -1.4210 1.6113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176725777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = 55.646333 kcal Electronic energy + Delta-G solvation = -20157.527106 eV Core-core repulsion = 17222.319212 eV Total energy + Delta-G solvation = -2935.207894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.98678 -39.55766 -37.87902 -36.09847 -35.11046 -31.97147 -31.41957 -30.98938 -28.68109 -27.19602 -24.72593 -23.75842 -23.08747 -22.60696 -22.34840 -20.73820 -19.14160 -18.11830 -17.78464 -17.02682 -16.68119 -16.33307 -16.24270 -15.59640 -15.11585 -14.98954 -14.64772 -14.41467 -14.15117 -13.83317 -13.61275 -13.14402 -13.03857 -12.77219 -12.72142 -12.51870 -12.20709 -12.14731 -12.07235 -11.66974 -11.62755 -11.53292 -11.28088 -11.14535 -10.89012 -9.62664 -9.40855 -9.31672 -8.65811 -7.99405 -6.37221 0.44531 0.49654 1.01731 1.23772 1.37722 1.49038 1.55027 2.20460 2.53262 2.70603 2.81256 3.24099 3.69449 3.74926 4.00894 4.05420 4.20428 4.24063 4.34232 4.42852 4.51653 4.64380 4.70469 4.82693 4.84793 4.95751 4.97596 5.12540 5.14964 5.19672 5.23690 5.30359 5.35625 5.39721 5.59369 5.62637 5.75313 5.88103 5.97111 6.08670 6.10078 6.24072 6.49502 6.81817 6.88902 6.95683 7.07197 8.33120 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.003644 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.541018 B = 7682.537239 C = 8281.394515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.263 4.263 11 C -0.070 4.070 12 C -0.270 4.270 13 C 0.185 3.815 14 N -0.687 5.687 15 C 0.187 3.813 16 C -0.190 4.190 17 C -0.084 4.084 18 C -0.168 4.168 19 C -0.020 4.020 20 C -0.134 4.134 21 C -0.166 4.166 22 C -0.165 4.165 23 C -0.183 4.183 24 C -0.226 4.226 25 H 0.286 0.714 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.405 0.595 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 -9.188 7.500 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.283 4.283 11 C -0.089 4.089 12 C -0.292 4.292 13 C 0.089 3.911 14 N -0.309 5.309 15 C 0.088 3.912 16 C -0.211 4.211 17 C -0.102 4.102 18 C -0.187 4.187 19 C -0.021 4.021 20 C -0.152 4.152 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.205 4.205 24 C -0.249 4.249 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.240 0.760 30 H 0.123 0.877 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.269 -9.095 7.406 16.265 hybrid contribution 0.641 1.361 -0.077 1.507 sum -10.628 -7.733 7.329 15.049 Atomic orbital electron populations 1.69906 1.08992 1.30369 1.35645 1.26744 0.95446 1.04445 0.91182 0.85233 0.79148 0.76003 0.79497 1.18700 1.19168 1.18246 1.19806 0.98325 0.92393 1.42509 0.90513 1.17736 0.90825 0.93137 0.88358 1.21153 1.05499 0.93167 1.08479 1.20691 0.94583 0.97296 0.96319 1.20383 1.03257 0.94982 1.10532 1.17667 0.87441 0.93821 0.92160 1.42125 1.20663 1.28649 1.39498 1.17991 0.89187 0.90123 0.93925 1.21062 1.02059 1.01736 0.96267 1.21130 0.93921 0.95607 0.99550 1.21080 1.02535 1.02857 0.92227 1.19101 0.94408 0.94065 0.94537 1.21048 0.92196 1.05403 0.96555 1.23168 1.01913 0.90633 1.04492 1.23080 0.93097 1.00010 1.03980 1.20662 1.00949 1.02023 0.96820 1.20826 1.03539 0.95056 1.05457 0.90336 0.88358 0.85965 0.87460 0.75980 0.87741 0.84223 0.83875 0.86611 0.87888 0.86948 0.87103 0.89039 0.85402 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.80 11.05 21.82 0.24 -43.56 16 2 C 0.04 1.88 5.13 85.25 0.44 2.32 16 3 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -27.45 9.05 23.46 0.21 -27.24 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 9 C 0.10 5.65 5.56 -21.31 -0.12 5.54 16 10 C -0.26 -13.24 9.79 22.76 0.22 -13.02 16 11 C -0.07 -3.17 10.02 22.20 0.22 -2.95 16 12 C -0.27 -12.24 7.77 22.59 0.18 -12.06 16 13 C 0.19 8.79 5.99 38.16 0.23 9.02 16 14 N -0.69 -27.77 5.46 -180.66 -0.99 -28.76 16 15 C 0.19 6.78 6.00 38.21 0.23 7.01 16 16 C -0.19 -6.83 7.77 22.40 0.17 -6.65 16 17 C -0.08 -2.39 10.04 22.25 0.22 -2.16 16 18 C -0.17 -4.17 9.30 22.30 0.21 -3.96 16 19 C -0.02 -0.53 5.61 -19.88 -0.11 -0.64 16 20 C -0.13 -2.59 6.04 -11.54 -0.07 -2.66 16 21 C -0.17 -2.41 9.86 30.59 0.30 -2.11 16 22 C -0.16 -2.58 10.16 30.59 0.31 -2.27 16 23 C -0.18 -5.53 9.64 22.40 0.22 -5.31 16 24 C -0.23 -12.08 8.57 22.86 0.20 -11.88 16 25 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 26 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 27 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 28 H 0.11 4.54 6.39 -2.91 -0.02 4.52 16 29 H 0.40 15.00 8.88 -92.71 -0.82 14.18 16 30 H 0.10 4.29 6.38 -2.91 -0.02 4.27 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.14 2.70 6.01 -2.91 -0.02 2.69 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 1.42 6.17 -2.39 -0.01 1.41 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 39 H 0.10 5.62 6.27 -2.91 -0.02 5.61 16 Total: -1.00 -61.22 324.82 4.59 -56.63 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: 0.25 Total: 44.04 kcal Atomic # 6 Polarization: -72.08 SS G_CDS: 3.06 Total: -69.02 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -0.75 Total: -72.31 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -61.22 4.59 -56.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176725777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.281 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds