Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46819 * 269.99716 * 3 2 1 5 5 H 1.48496 * 109.47252 * 29.99608 * 3 2 1 6 6 H 1.48500 * 109.47121 * 149.99857 * 3 2 1 7 7 C 1.37875 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99739 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00401 * 179.97438 * 7 2 1 10 10 C 1.53120 * 109.52656 * 180.02562 * 9 7 2 11 11 C 1.53028 * 109.28043 * 177.62550 * 10 9 7 12 12 N 1.46853 * 109.52367 * 300.81936 * 11 10 9 13 13 C 1.46899 * 111.00113 * 185.84021 * 12 11 10 14 14 C 1.50695 * 109.47232 * 170.00008 * 13 12 11 15 15 C 1.38183 * 119.96100 * 270.30214 * 14 13 12 16 16 C 1.38725 * 119.99000 * 180.25458 * 15 14 13 17 17 O 1.35905 * 120.04007 * 179.74753 * 16 15 14 18 18 C 1.38713 * 119.91930 * 359.46609 * 16 15 14 19 19 C 1.38346 * 119.91698 * 0.25257 * 18 16 15 20 20 F 1.35098 * 119.99352 * 180.02562 * 19 18 16 21 21 C 1.38213 * 119.95863 * 89.99726 * 14 13 12 22 22 C 1.46845 * 111.19313 * 61.74316 * 12 11 10 23 23 C 1.53037 * 109.52454 * 298.25724 * 22 12 11 24 24 H 0.97001 * 120.00409 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.52350 * 59.87896 * 9 7 2 26 26 H 1.09004 * 109.50175 * 57.67738 * 10 9 7 27 27 H 1.09000 * 109.53736 * 297.58742 * 10 9 7 28 28 H 1.09005 * 109.46531 * 180.80839 * 11 10 9 29 29 H 1.08997 * 109.45960 * 60.83364 * 11 10 9 30 30 H 1.08995 * 109.47134 * 50.00018 * 13 12 11 31 31 H 1.09004 * 109.47033 * 290.00414 * 13 12 11 32 32 H 1.07991 * 120.00157 * 359.97392 * 15 14 13 33 33 H 0.96705 * 113.99576 * 269.71911 * 17 16 15 34 34 H 1.08003 * 120.04076 * 180.23797 * 18 16 15 35 35 H 1.07992 * 119.95465 * 0.02853 * 21 14 13 36 36 H 1.08995 * 109.46309 * 58.28013 * 22 12 11 37 37 H 1.09009 * 109.45680 * 178.24161 * 22 12 11 38 38 H 1.09001 * 109.50259 * 299.24170 * 23 22 12 39 39 H 1.09002 * 109.53383 * 179.14567 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0233 -2.6371 0.0001 11 6 5.5524 -2.6310 -0.0604 12 7 5.9926 -1.9367 -1.2772 13 6 7.4496 -2.0316 -1.4395 14 6 7.8365 -1.5292 -2.8066 15 6 7.8864 -2.4043 -3.8748 16 6 8.2476 -1.9435 -5.1324 17 8 8.3021 -2.8044 -6.1827 18 6 8.5475 -0.6020 -5.3179 19 6 8.4907 0.2722 -4.2471 20 9 8.7820 1.5792 -4.4261 21 6 8.1348 -0.1924 -2.9917 22 6 5.5532 -0.5356 -1.2774 23 6 4.0240 -0.4792 -1.2533 24 1 -0.4851 0.8400 0.0004 25 1 3.8761 -0.6779 0.8881 26 1 3.6268 -3.1639 -0.8679 27 1 3.6971 -3.1395 0.9108 28 1 5.9194 -3.6573 -0.0749 29 1 5.9483 -2.1161 0.8149 30 1 7.7601 -3.0709 -1.3331 31 1 7.9402 -1.4260 -0.6775 32 1 7.6487 -3.4477 -3.7296 33 1 9.1670 -3.2185 -6.3073 34 1 8.8252 -0.2404 -6.2970 35 1 8.0908 0.4906 -2.1564 36 1 5.9493 -0.0306 -0.3965 37 1 5.9208 -0.0399 -2.1760 38 1 3.6277 -0.9720 -2.1411 39 1 3.6979 0.5608 -1.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336066724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -61.207972 kcal Electronic energy + Delta-G solvation = -21789.020520 eV Core-core repulsion = 18417.976218 eV Total energy + Delta-G solvation = -3371.044302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.05679 -40.05999 -38.55592 -36.84850 -34.18957 -32.10765 -30.72598 -30.33989 -29.75484 -27.03688 -24.56848 -23.03749 -22.45549 -21.95073 -20.95537 -18.86069 -18.45362 -16.93428 -16.72936 -16.68160 -16.35244 -15.94225 -15.59681 -14.86637 -14.66309 -14.31766 -14.12235 -13.81511 -13.27193 -13.12254 -12.81805 -12.53378 -12.25826 -12.18963 -11.92132 -11.59149 -11.51501 -11.43569 -10.97921 -10.80929 -10.56684 -10.07439 -9.90293 -9.61894 -9.12830 -8.97999 -8.94313 -8.77504 -8.49156 -8.02342 -6.04099 -4.02351 0.87644 0.94638 3.20393 3.29004 3.38158 3.40479 3.67369 4.19396 4.31162 4.43415 4.51403 4.77443 4.87927 5.09634 5.13356 5.27172 5.37321 5.48890 5.54145 5.65376 5.79387 5.83027 5.84013 5.89373 6.05184 6.08880 6.16694 6.27664 6.36190 6.43401 6.54779 6.73652 6.82361 6.93112 7.22796 7.34195 7.35024 7.47129 7.63977 7.81498 8.56621 9.00596 9.59058 11.09489 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.004757 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.199705 B = 5884.472908 C = 6481.565314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.096 4.096 11 C 0.057 3.943 12 N -0.528 5.528 13 C 0.089 3.911 14 C -0.024 4.024 15 C -0.132 4.132 16 C 0.133 3.867 17 O -0.493 6.493 18 C -0.186 4.186 19 C 0.114 3.886 20 F -0.138 7.138 21 C -0.156 4.156 22 C 0.050 3.950 23 C -0.116 4.116 24 H 0.263 0.737 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.138 0.862 33 H 0.392 0.608 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.026 0.974 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.464 -3.910 -7.233 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.092 0.908 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.070 4.070 12 N -0.253 5.253 13 C -0.038 4.038 14 C -0.025 4.025 15 C -0.151 4.151 16 C 0.088 3.912 17 O -0.303 6.303 18 C -0.206 4.206 19 C 0.095 3.905 20 F -0.116 7.116 21 C -0.175 4.175 22 C -0.077 4.077 23 C -0.154 4.154 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.490 -3.836 -7.689 22.219 hybrid contribution 1.228 1.617 0.517 2.095 sum 21.718 -2.219 -7.172 22.979 Atomic orbital electron populations 1.69896 1.06266 1.26830 1.51142 1.25016 0.94656 0.98960 0.94588 0.86873 0.79811 0.83786 0.77913 1.20556 1.22561 1.19274 1.21059 0.88852 0.94408 1.50451 0.90845 1.19187 0.96680 0.91982 0.92753 1.21496 0.91179 0.99332 1.01389 1.22212 0.98350 0.97242 0.89174 1.61963 1.09010 1.15366 1.38935 1.21070 0.89898 1.01212 0.91653 1.19498 0.95117 0.91961 0.95948 1.21346 1.01470 1.01321 0.90943 1.18070 0.98293 0.88184 0.86611 1.84862 1.37617 1.59959 1.47881 1.21314 1.06351 0.93658 0.99274 1.17367 1.00893 0.78170 0.94071 1.91511 1.90935 1.33130 1.96064 1.21129 1.03364 0.96606 0.96439 1.22311 0.98450 0.87519 0.99428 1.22013 0.91270 1.00000 1.02075 0.92742 0.96072 0.91715 0.92238 0.91647 0.95430 0.89555 0.93833 0.84438 0.75202 0.84352 0.84640 0.95616 0.91623 0.91244 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 3 Si 0.89 22.29 24.37 -169.99 -4.14 18.15 16 4 H -0.28 -6.88 6.89 56.52 0.39 -6.49 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.51 -14.37 9.15 -34.44 -0.32 -14.69 16 8 H 0.07 2.23 7.99 -52.48 -0.42 1.82 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.10 -1.88 5.32 -26.65 -0.14 -2.02 16 11 C 0.06 0.91 5.46 -3.84 -0.02 0.89 16 12 N -0.53 -8.35 4.65 -236.12 -1.10 -9.45 16 13 C 0.09 1.08 5.12 -4.98 -0.03 1.06 16 14 C -0.02 -0.29 4.88 -104.65 -0.51 -0.80 16 15 C -0.13 -1.48 9.64 -39.42 -0.38 -1.86 16 16 C 0.13 1.44 6.70 -39.23 -0.26 1.18 16 17 O -0.49 -4.59 13.50 -19.44 -0.26 -4.86 16 18 C -0.19 -2.07 9.97 -39.37 -0.39 -2.46 16 19 C 0.11 1.40 7.30 -39.44 -0.29 1.11 16 20 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 21 C -0.16 -1.91 7.85 -39.49 -0.31 -2.22 16 22 C 0.05 0.90 5.15 -3.83 -0.02 0.88 16 23 C -0.12 -2.54 4.84 -26.65 -0.13 -2.67 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.87 8.02 -51.93 -0.42 0.46 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 31 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.39 1.50 9.06 45.56 0.41 1.91 16 34 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.14 1.57 7.95 -52.49 -0.42 1.16 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.11 5.75 -51.92 -0.30 0.81 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.05 1.11 3.38 -51.93 -0.18 0.94 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -32.14 313.31 -7.68 -39.82 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.66 Total: 0.09 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.05 Total: -19.56 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.32 Total: -36.63 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.26 Total: -4.86 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.14 -7.68 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336066724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.387 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds