Wall clock time and date at job start Wed Apr 15 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46819 * 269.99716 * 3 2 1 5 5 H 1.48496 * 109.47252 * 29.99608 * 3 2 1 6 6 H 1.48500 * 109.47121 * 149.99857 * 3 2 1 7 7 C 1.37875 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99739 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00401 * 179.97438 * 7 2 1 10 10 C 1.53120 * 109.52656 * 180.02562 * 9 7 2 11 11 C 1.53028 * 109.28043 * 177.62550 * 10 9 7 12 12 N 1.46853 * 109.52367 * 300.81936 * 11 10 9 13 13 C 1.46899 * 111.00113 * 185.84021 * 12 11 10 14 14 C 1.50695 * 109.47232 * 170.00008 * 13 12 11 15 15 C 1.38183 * 119.96100 * 270.30214 * 14 13 12 16 16 C 1.38725 * 119.99000 * 180.25458 * 15 14 13 17 17 O 1.35905 * 120.04007 * 179.74753 * 16 15 14 18 18 C 1.38713 * 119.91930 * 359.46609 * 16 15 14 19 19 C 1.38346 * 119.91698 * 0.25257 * 18 16 15 20 20 F 1.35098 * 119.99352 * 180.02562 * 19 18 16 21 21 C 1.38213 * 119.95863 * 89.99726 * 14 13 12 22 22 C 1.46845 * 111.19313 * 61.74316 * 12 11 10 23 23 C 1.53037 * 109.52454 * 298.25724 * 22 12 11 24 24 H 0.97001 * 120.00409 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.52350 * 59.87896 * 9 7 2 26 26 H 1.09004 * 109.50175 * 57.67738 * 10 9 7 27 27 H 1.09000 * 109.53736 * 297.58742 * 10 9 7 28 28 H 1.09005 * 109.46531 * 180.80839 * 11 10 9 29 29 H 1.08997 * 109.45960 * 60.83364 * 11 10 9 30 30 H 1.08995 * 109.47134 * 50.00018 * 13 12 11 31 31 H 1.09004 * 109.47033 * 290.00414 * 13 12 11 32 32 H 1.07991 * 120.00157 * 359.97392 * 15 14 13 33 33 H 0.96705 * 113.99576 * 269.71911 * 17 16 15 34 34 H 1.08003 * 120.04076 * 180.23797 * 18 16 15 35 35 H 1.07992 * 119.95465 * 0.02853 * 21 14 13 36 36 H 1.08995 * 109.46309 * 58.28013 * 22 12 11 37 37 H 1.09009 * 109.45680 * 178.24161 * 22 12 11 38 38 H 1.09001 * 109.50259 * 299.24170 * 23 22 12 39 39 H 1.09002 * 109.53383 * 179.14567 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0233 -2.6371 0.0001 11 6 5.5524 -2.6310 -0.0604 12 7 5.9926 -1.9367 -1.2772 13 6 7.4496 -2.0316 -1.4395 14 6 7.8365 -1.5292 -2.8066 15 6 7.8864 -2.4043 -3.8748 16 6 8.2476 -1.9435 -5.1324 17 8 8.3021 -2.8044 -6.1827 18 6 8.5475 -0.6020 -5.3179 19 6 8.4907 0.2722 -4.2471 20 9 8.7820 1.5792 -4.4261 21 6 8.1348 -0.1924 -2.9917 22 6 5.5532 -0.5356 -1.2774 23 6 4.0240 -0.4792 -1.2533 24 1 -0.4851 0.8400 0.0004 25 1 3.8761 -0.6779 0.8881 26 1 3.6268 -3.1639 -0.8679 27 1 3.6971 -3.1395 0.9108 28 1 5.9194 -3.6573 -0.0749 29 1 5.9483 -2.1161 0.8149 30 1 7.7601 -3.0709 -1.3331 31 1 7.9402 -1.4260 -0.6775 32 1 7.6487 -3.4477 -3.7296 33 1 9.1670 -3.2185 -6.3073 34 1 8.8252 -0.2404 -6.2970 35 1 8.0908 0.4906 -2.1564 36 1 5.9493 -0.0306 -0.3965 37 1 5.9208 -0.0399 -2.1760 38 1 3.6277 -0.9720 -2.1411 39 1 3.6979 0.5608 -1.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336066724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:39 Heat of formation + Delta-G solvation = -84.249268 kcal Electronic energy + Delta-G solvation = -21790.019666 eV Core-core repulsion = 18417.976218 eV Total energy + Delta-G solvation = -3372.043448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.98022 -40.95343 -39.78974 -37.75910 -35.75344 -33.90048 -32.04949 -31.66171 -30.67553 -28.48665 -26.05853 -24.22736 -23.60091 -23.29452 -22.14389 -20.46885 -19.26089 -18.82937 -17.79947 -17.56843 -17.35681 -17.13139 -16.66330 -16.12158 -15.84247 -15.69104 -15.37923 -14.87884 -14.86445 -14.69044 -14.37847 -13.67444 -13.61076 -13.40211 -13.28361 -12.90604 -12.72145 -12.50350 -12.44182 -12.14531 -12.03914 -11.70750 -11.66647 -11.38457 -10.97297 -10.81610 -10.62195 -9.88441 -9.64212 -9.20458 -8.30301 -6.32768 0.05105 0.08880 1.28195 1.31756 1.42528 2.30831 2.35486 2.89368 3.05390 3.15439 3.40962 3.63644 3.93858 4.05988 4.09982 4.16315 4.21880 4.26663 4.34159 4.47695 4.57285 4.66883 4.72922 4.78713 4.80702 4.94948 4.95871 4.98064 5.01770 5.18365 5.24592 5.26637 5.43024 5.55513 5.67702 5.75072 5.78437 6.14378 6.23852 6.33418 6.74786 6.82237 7.32449 8.86987 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.004757 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.199705 B = 5884.472908 C = 6481.565314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.246 1.246 7 C -0.516 4.516 8 H 0.032 0.968 9 C 0.011 3.989 10 C -0.094 4.094 11 C 0.066 3.934 12 N -0.540 5.540 13 C 0.092 3.908 14 C -0.032 4.032 15 C -0.135 4.135 16 C 0.137 3.863 17 O -0.502 6.502 18 C -0.189 4.189 19 C 0.099 3.901 20 F -0.146 7.146 21 C -0.165 4.165 22 C 0.060 3.940 23 C -0.114 4.114 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.150 0.850 33 H 0.416 0.584 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.595 -4.149 -7.535 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.554 4.554 8 H 0.051 0.949 9 C -0.008 4.008 10 C -0.132 4.132 11 C -0.061 4.061 12 N -0.265 5.265 13 C -0.034 4.034 14 C -0.033 4.033 15 C -0.154 4.154 16 C 0.092 3.908 17 O -0.316 6.316 18 C -0.209 4.209 19 C 0.080 3.920 20 F -0.125 7.125 21 C -0.184 4.184 22 C -0.067 4.067 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 23.671 -4.104 -7.997 25.320 hybrid contribution 0.213 1.546 0.540 1.651 sum 23.884 -2.558 -7.457 25.151 Atomic orbital electron populations 1.70051 1.08196 1.27873 1.53197 1.25877 0.95385 1.02932 0.94428 0.85849 0.79209 0.78938 0.78471 1.19716 1.22631 1.16972 1.21442 0.91814 0.92799 1.49305 0.94936 1.19166 0.93291 0.94917 0.93395 1.21403 0.94587 0.96424 1.00746 1.22111 0.94912 0.99405 0.89661 1.61872 1.11841 1.13831 1.38959 1.21156 0.87176 1.03156 0.91948 1.19530 0.95606 0.91907 0.96218 1.21534 1.01033 1.01876 0.90911 1.18102 0.97565 0.88272 0.86871 1.84805 1.39769 1.59779 1.47256 1.21497 1.05997 0.93789 0.99604 1.17544 1.01748 0.78061 0.94659 1.91488 1.91128 1.33713 1.96134 1.21230 1.03658 0.96973 0.96546 1.22108 0.94962 0.89337 1.00339 1.21863 0.94741 0.98464 1.00138 0.92677 0.96240 0.93250 0.92274 0.88324 0.94493 0.86997 0.92569 0.83261 0.72367 0.83166 0.84326 0.94834 0.90618 0.93104 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 2 C 0.01 0.61 5.45 84.65 0.46 1.07 16 3 Si 0.95 46.25 24.37 68.60 1.67 47.92 16 4 H -0.27 -12.78 6.89 99.48 0.69 -12.09 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.25 -11.02 6.53 99.48 0.65 -10.37 16 7 C -0.52 -29.97 9.15 25.60 0.23 -29.73 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 9 C 0.01 0.52 1.75 -11.46 -0.02 0.50 16 10 C -0.09 -3.58 5.32 30.64 0.16 -3.41 16 11 C 0.07 1.86 5.46 86.32 0.47 2.34 16 12 N -0.54 -15.27 4.65 -900.94 -4.19 -19.46 16 13 C 0.09 1.85 5.12 85.56 0.44 2.29 16 14 C -0.03 -0.66 4.88 -19.89 -0.10 -0.76 16 15 C -0.13 -2.61 9.64 22.37 0.22 -2.39 16 16 C 0.14 2.61 6.70 22.50 0.15 2.76 16 17 O -0.50 -7.92 13.50 -92.48 -1.25 -9.17 16 18 C -0.19 -3.81 9.97 22.41 0.22 -3.59 16 19 C 0.10 2.26 7.30 22.36 0.16 2.42 16 20 F -0.15 -3.58 17.27 44.97 0.78 -2.81 16 21 C -0.16 -3.64 7.85 22.33 0.18 -3.46 16 22 C 0.06 1.99 5.15 86.33 0.44 2.44 16 23 C -0.11 -4.89 4.84 30.64 0.15 -4.75 16 24 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 25 H 0.02 0.91 7.19 -2.39 -0.02 0.90 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 2.18 8.02 -2.38 -0.02 2.16 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 1.70 7.93 -2.39 -0.02 1.69 16 31 H 0.06 1.03 8.07 -2.38 -0.02 1.01 16 32 H 0.15 2.49 8.06 -2.92 -0.02 2.47 16 33 H 0.42 1.88 9.06 -74.05 -0.67 1.21 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.14 2.89 7.95 -2.91 -0.02 2.86 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 2.36 5.75 -2.38 -0.01 2.35 16 38 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.03 1.54 3.38 -2.39 -0.01 1.53 16 Total: -1.00 -71.16 313.31 0.80 -70.37 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.31 Total: 8.15 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.17 Total: -34.29 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -3.89 Total: -80.18 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.25 Total: -9.17 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.67 Total: 47.92 kcal Total: -71.16 0.80 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336066724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.881 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds