Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48498 * 109.47216 * 270.00330 * 3 2 1 5 5 H 1.48500 * 109.47063 * 30.00125 * 3 2 1 6 6 H 1.48495 * 109.47010 * 150.00107 * 3 2 1 7 7 C 1.37871 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99744 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.54033 * 60.10015 * 9 7 2 11 11 C 1.53120 * 109.50510 * 299.99545 * 9 7 2 12 12 C 1.53115 * 109.16232 * 182.40307 * 11 9 7 13 13 C 1.53039 * 109.27617 * 57.66069 * 12 11 9 14 14 N 1.46850 * 109.52166 * 300.81673 * 13 12 11 15 15 C 1.46907 * 110.99621 * 185.83812 * 14 13 12 16 16 C 1.50703 * 109.46719 * 164.19748 * 15 14 13 17 17 C 1.38172 * 119.98379 * 105.43646 * 16 15 14 18 18 C 1.38686 * 119.96780 * 179.74069 * 17 16 15 19 19 O 1.35950 * 120.03102 * 180.25795 * 18 17 16 20 20 C 1.38728 * 119.93765 * 0.49453 * 18 17 16 21 21 C 1.38126 * 119.97074 * 359.49081 * 20 18 17 22 22 C 1.38428 * 119.98439 * 285.41836 * 16 15 14 23 23 F 1.35105 * 119.97239 * 0.04601 * 22 16 15 24 24 C 1.46847 * 111.19428 * 61.74749 * 14 13 12 25 25 H 0.97005 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.51663 * 62.50598 * 11 9 7 27 27 H 1.08995 * 109.57669 * 302.34635 * 11 9 7 28 28 H 1.08999 * 109.51166 * 297.71724 * 12 11 9 29 29 H 1.09004 * 109.50227 * 177.59789 * 12 11 9 30 30 H 1.09005 * 109.46157 * 180.80062 * 13 12 11 31 31 H 1.09000 * 109.46506 * 60.83696 * 13 12 11 32 32 H 1.08993 * 109.46948 * 44.20245 * 15 14 13 33 33 H 1.08996 * 109.47178 * 284.19668 * 15 14 13 34 34 H 1.08003 * 120.01916 * 359.97438 * 17 16 15 35 35 H 0.96699 * 114.00014 * 270.23595 * 19 18 17 36 36 H 1.08000 * 120.01380 * 179.76174 * 20 18 17 37 37 H 1.07997 * 119.98035 * 180.25544 * 21 20 18 38 38 H 1.08996 * 109.46713 * 58.27014 * 24 14 13 39 39 H 1.09000 * 109.45958 * 178.24339 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8764 -0.6821 0.8893 11 6 4.0223 -0.4721 -1.2512 12 6 5.5522 -0.5289 -1.2745 13 6 6.0040 -1.9908 -1.2431 14 7 5.4908 -2.6370 -0.0284 15 6 6.0189 -4.0014 0.1052 16 6 5.8009 -4.4885 1.5146 17 6 4.8120 -5.4165 1.7792 18 6 4.6152 -5.8686 3.0754 19 8 3.6460 -6.7856 3.3364 20 6 5.4049 -5.3806 4.1063 21 6 6.3930 -4.4532 3.8389 22 6 6.5917 -4.0063 2.5433 23 9 7.5579 -3.0985 2.2833 24 6 4.0225 -2.6366 -0.0067 25 1 -0.4850 0.8401 0.0004 26 1 3.6967 0.5680 -1.2296 27 1 3.6260 -0.9595 -2.1419 28 1 5.9492 -0.0066 -0.4041 29 1 5.9202 -0.0538 -2.1839 30 1 7.0932 -2.0344 -1.2453 31 1 5.6182 -2.5091 -2.1210 32 1 7.0857 -4.0015 -0.1183 33 1 5.5016 -4.6610 -0.5914 34 1 4.1950 -5.7925 0.9764 35 1 2.7853 -6.3989 3.5478 36 1 5.2502 -5.7290 5.1168 37 1 7.0106 -4.0762 4.6406 38 1 3.6460 -3.1518 -0.8903 39 1 3.6724 -3.1492 0.8893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140048607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -61.833550 kcal Electronic energy + Delta-G solvation = -22204.250562 eV Core-core repulsion = 18833.179133 eV Total energy + Delta-G solvation = -3371.071429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.66603 -39.77453 -38.42717 -36.57275 -34.12581 -32.46750 -30.90969 -30.23884 -29.26058 -26.23733 -24.94318 -22.94240 -22.77685 -21.24855 -21.09362 -18.88027 -18.06828 -17.44352 -16.77404 -16.61255 -15.84955 -15.46340 -15.09392 -14.55809 -14.33746 -14.18518 -13.70218 -13.62537 -13.47571 -13.16292 -12.88803 -12.54760 -12.40551 -12.22872 -11.70958 -11.64389 -11.47471 -11.12482 -11.05662 -10.52424 -10.47633 -10.07999 -9.94326 -9.68581 -9.16278 -9.02823 -8.91197 -8.51564 -8.38626 -7.86959 -6.07448 -4.06438 1.07472 1.14403 3.28517 3.36845 3.40038 3.43887 4.14762 4.34570 4.40302 4.42661 4.72061 4.72816 5.07105 5.24283 5.28473 5.37345 5.46691 5.49982 5.63969 5.80227 5.82513 5.87712 5.97970 6.07445 6.14580 6.24372 6.28042 6.28407 6.32934 6.47467 6.60852 6.73504 6.80191 6.84275 7.19961 7.38876 7.54207 7.57823 7.65243 7.85872 8.51536 8.95166 9.55730 11.05720 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.005763 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.391536 B = 4857.450187 C = 5629.342695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.034 0.966 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.065 3.935 14 N -0.537 5.537 15 C 0.094 3.906 16 C -0.089 4.089 17 C -0.107 4.107 18 C 0.093 3.907 19 O -0.499 6.499 20 C -0.120 4.120 21 C -0.143 4.143 22 C 0.115 3.885 23 F -0.131 7.131 24 C 0.077 3.923 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.136 0.864 35 H 0.393 0.607 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.027 0.973 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.884 -9.561 4.058 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.052 0.948 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.062 4.062 14 N -0.261 5.261 15 C -0.034 4.034 16 C -0.090 4.090 17 C -0.126 4.126 18 C 0.048 3.952 19 O -0.310 6.310 20 C -0.139 4.139 21 C -0.162 4.162 22 C 0.096 3.904 23 F -0.109 7.109 24 C -0.050 4.050 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.154 0.846 35 H 0.250 0.750 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.045 0.955 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.369 -9.548 4.324 16.987 hybrid contribution -0.270 1.002 -0.665 1.232 sum 13.099 -8.546 3.659 16.062 Atomic orbital electron populations 1.69903 1.06287 1.26923 1.50972 1.24974 0.94658 0.99030 0.94392 0.86836 0.80053 0.83477 0.77874 1.20705 1.22621 1.18810 1.20985 0.88767 0.94433 1.50982 0.91024 1.19152 0.95923 0.91082 0.93702 0.94752 1.22027 0.92671 1.00238 1.01084 1.21651 0.98058 0.95097 1.00905 1.21984 0.98546 0.95482 0.90231 1.62000 1.10614 1.15275 1.38211 1.20909 1.00591 0.90672 0.91208 1.19734 0.96039 0.97339 0.95908 1.21250 0.97880 0.96443 0.97071 1.18365 0.92839 0.92014 0.91969 1.84803 1.21912 1.32712 1.91580 1.21199 0.96407 0.96792 0.99464 1.20977 1.00371 0.99494 0.95391 1.17444 0.89219 0.90463 0.93309 1.91503 1.60215 1.64428 1.94749 1.22123 0.83459 0.99740 0.99656 0.92705 0.93558 0.92543 0.91764 0.92694 0.91750 0.95275 0.90092 0.93599 0.84624 0.75037 0.84730 0.84522 0.95522 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 22.23 24.35 -169.99 -4.14 18.09 16 4 H -0.28 -6.83 6.89 56.52 0.39 -6.44 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 7 C -0.51 -14.31 9.15 -34.44 -0.31 -14.62 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.03 0.87 7.21 -51.93 -0.37 0.50 16 11 C -0.12 -2.66 4.73 -26.61 -0.13 -2.78 16 12 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 13 C 0.07 1.05 5.44 -3.83 -0.02 1.03 16 14 N -0.54 -9.32 4.60 -236.10 -1.09 -10.41 16 15 C 0.09 1.35 4.79 -4.97 -0.02 1.33 16 16 C -0.09 -1.27 4.65 -104.57 -0.49 -1.76 16 17 C -0.11 -1.44 8.98 -39.44 -0.35 -1.79 16 18 C 0.09 1.16 6.70 -39.23 -0.26 0.89 16 19 O -0.50 -5.60 13.50 -19.58 -0.26 -5.86 16 20 C -0.12 -1.37 9.98 -39.44 -0.39 -1.76 16 21 C -0.14 -1.73 10.02 -39.54 -0.40 -2.13 16 22 C 0.12 1.65 7.24 -39.42 -0.29 1.37 16 23 F -0.13 -2.00 16.76 2.25 0.04 -1.97 16 24 C 0.08 1.55 4.53 -3.83 -0.02 1.53 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.05 1.07 3.34 -51.93 -0.17 0.89 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.90 7.96 -51.93 -0.41 0.48 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.06 7.82 -51.93 -0.41 0.66 16 33 H 0.05 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.14 1.70 8.00 -52.48 -0.42 1.28 16 35 H 0.39 2.86 9.06 45.56 0.41 3.27 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.35 6.83 -51.93 -0.35 1.00 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -31.65 314.52 -7.75 -39.40 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.70 Total: 1.51 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.11 Total: -18.71 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.31 Total: -37.19 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.26 Total: -5.86 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.65 -7.75 -39.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140048607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.437 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds