Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48498 * 109.47216 * 270.00330 * 3 2 1 5 5 H 1.48500 * 109.47063 * 30.00125 * 3 2 1 6 6 H 1.48495 * 109.47010 * 150.00107 * 3 2 1 7 7 C 1.37871 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99744 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.54033 * 60.10015 * 9 7 2 11 11 C 1.53120 * 109.50510 * 299.99545 * 9 7 2 12 12 C 1.53115 * 109.16232 * 182.40307 * 11 9 7 13 13 C 1.53039 * 109.27617 * 57.66069 * 12 11 9 14 14 N 1.46850 * 109.52166 * 300.81673 * 13 12 11 15 15 C 1.46907 * 110.99621 * 185.83812 * 14 13 12 16 16 C 1.50703 * 109.46719 * 164.19748 * 15 14 13 17 17 C 1.38172 * 119.98379 * 105.43646 * 16 15 14 18 18 C 1.38686 * 119.96780 * 179.74069 * 17 16 15 19 19 O 1.35950 * 120.03102 * 180.25795 * 18 17 16 20 20 C 1.38728 * 119.93765 * 0.49453 * 18 17 16 21 21 C 1.38126 * 119.97074 * 359.49081 * 20 18 17 22 22 C 1.38428 * 119.98439 * 285.41836 * 16 15 14 23 23 F 1.35105 * 119.97239 * 0.04601 * 22 16 15 24 24 C 1.46847 * 111.19428 * 61.74749 * 14 13 12 25 25 H 0.97005 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.51663 * 62.50598 * 11 9 7 27 27 H 1.08995 * 109.57669 * 302.34635 * 11 9 7 28 28 H 1.08999 * 109.51166 * 297.71724 * 12 11 9 29 29 H 1.09004 * 109.50227 * 177.59789 * 12 11 9 30 30 H 1.09005 * 109.46157 * 180.80062 * 13 12 11 31 31 H 1.09000 * 109.46506 * 60.83696 * 13 12 11 32 32 H 1.08993 * 109.46948 * 44.20245 * 15 14 13 33 33 H 1.08996 * 109.47178 * 284.19668 * 15 14 13 34 34 H 1.08003 * 120.01916 * 359.97438 * 17 16 15 35 35 H 0.96699 * 114.00014 * 270.23595 * 19 18 17 36 36 H 1.08000 * 120.01380 * 179.76174 * 20 18 17 37 37 H 1.07997 * 119.98035 * 180.25544 * 21 20 18 38 38 H 1.08996 * 109.46713 * 58.27014 * 24 14 13 39 39 H 1.09000 * 109.45958 * 178.24339 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8764 -0.6821 0.8893 11 6 4.0223 -0.4721 -1.2512 12 6 5.5522 -0.5289 -1.2745 13 6 6.0040 -1.9908 -1.2431 14 7 5.4908 -2.6370 -0.0284 15 6 6.0189 -4.0014 0.1052 16 6 5.8009 -4.4885 1.5146 17 6 4.8120 -5.4165 1.7792 18 6 4.6152 -5.8686 3.0754 19 8 3.6460 -6.7856 3.3364 20 6 5.4049 -5.3806 4.1063 21 6 6.3930 -4.4532 3.8389 22 6 6.5917 -4.0063 2.5433 23 9 7.5579 -3.0985 2.2833 24 6 4.0225 -2.6366 -0.0067 25 1 -0.4850 0.8401 0.0004 26 1 3.6967 0.5680 -1.2296 27 1 3.6260 -0.9595 -2.1419 28 1 5.9492 -0.0066 -0.4041 29 1 5.9202 -0.0538 -2.1839 30 1 7.0932 -2.0344 -1.2453 31 1 5.6182 -2.5091 -2.1210 32 1 7.0857 -4.0015 -0.1183 33 1 5.5016 -4.6610 -0.5914 34 1 4.1950 -5.7925 0.9764 35 1 2.7853 -6.3989 3.5478 36 1 5.2502 -5.7290 5.1168 37 1 7.0106 -4.0762 4.6406 38 1 3.6460 -3.1518 -0.8903 39 1 3.6724 -3.1492 0.8893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140048607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -84.176599 kcal Electronic energy + Delta-G solvation = -22205.219430 eV Core-core repulsion = 18833.179133 eV Total energy + Delta-G solvation = -3372.040296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.75014 -40.80336 -39.79998 -37.57390 -35.71519 -34.21753 -32.33463 -31.77859 -30.26355 -27.52945 -26.80087 -24.28529 -23.78642 -22.88083 -22.24564 -20.50386 -19.09023 -18.74925 -18.43784 -17.72542 -17.30168 -16.67248 -16.17435 -15.95472 -15.89145 -15.35956 -15.23047 -14.91394 -14.77057 -14.58491 -14.36224 -13.94653 -13.83834 -13.58977 -13.00900 -12.94219 -12.78458 -12.59930 -12.54049 -12.16420 -11.92535 -11.76244 -11.47540 -11.39940 -11.01055 -10.85018 -10.61737 -10.01317 -9.38940 -9.22023 -8.31352 -6.34283 0.08825 0.17414 1.28357 1.35148 1.46030 2.31695 2.39079 3.04648 3.10168 3.27713 3.36873 3.66330 3.77487 4.01020 4.11565 4.14603 4.21137 4.33757 4.42661 4.46349 4.54601 4.66971 4.73769 4.81367 4.87100 4.91736 4.95491 5.03645 5.13627 5.15320 5.22524 5.26124 5.33816 5.43957 5.62472 5.71918 5.79248 6.14242 6.21106 6.33942 6.72552 6.80124 7.31475 8.85268 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.005763 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.391536 B = 4857.450187 C = 5629.342695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.035 0.965 9 C 0.021 3.979 10 H 0.018 0.982 11 C -0.123 4.123 12 C -0.114 4.114 13 C 0.064 3.936 14 N -0.545 5.545 15 C 0.096 3.904 16 C -0.103 4.103 17 C -0.122 4.122 18 C 0.090 3.910 19 O -0.506 6.506 20 C -0.117 4.117 21 C -0.140 4.140 22 C 0.093 3.907 23 F -0.140 7.140 24 C 0.093 3.907 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.410 0.590 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.019 0.981 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.229 -9.531 4.285 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.227 1.227 6 H -0.176 1.176 7 C -0.555 4.555 8 H 0.053 0.947 9 C 0.001 3.999 10 H 0.037 0.963 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.064 4.064 14 N -0.269 5.269 15 C -0.031 4.031 16 C -0.105 4.105 17 C -0.141 4.141 18 C 0.046 3.954 19 O -0.319 6.319 20 C -0.135 4.135 21 C -0.159 4.159 22 C 0.073 3.927 23 F -0.119 7.119 24 C -0.035 4.035 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.269 0.731 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.037 0.963 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.727 -9.532 4.546 18.943 hybrid contribution -1.074 0.856 -0.680 1.532 sum 14.653 -8.676 3.866 17.463 Atomic orbital electron populations 1.70042 1.08048 1.27941 1.52869 1.25788 0.95359 1.02751 0.94245 0.85842 0.78989 0.78955 0.78635 1.19214 1.22708 1.17635 1.21304 0.91334 0.92995 1.49896 0.94693 1.19056 0.93001 0.93625 0.94172 0.96338 1.21928 0.95934 0.98793 0.99382 1.21625 0.94602 0.96681 1.02247 1.22081 1.00252 0.94192 0.89832 1.61928 1.08300 1.17441 1.39257 1.20964 1.01419 0.89063 0.91691 1.19794 0.96662 0.97979 0.96017 1.21359 0.98021 0.96889 0.97797 1.18522 0.93195 0.91757 0.91962 1.84756 1.22761 1.32830 1.91553 1.21501 0.95493 0.96061 1.00460 1.21275 1.00385 0.99013 0.95182 1.17707 0.89613 0.91081 0.94281 1.91471 1.60618 1.64883 1.94899 1.21759 0.85785 0.97074 0.98880 0.92579 0.94839 0.93023 0.92217 0.89680 0.88745 0.94577 0.88385 0.92845 0.84617 0.73088 0.82058 0.82217 0.96250 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.27 16 2 C 0.02 0.92 5.45 84.65 0.46 1.38 16 3 Si 0.95 46.06 24.35 68.60 1.67 47.74 16 4 H -0.27 -12.25 6.89 99.48 0.69 -11.56 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.25 -11.68 6.53 99.48 0.65 -11.03 16 7 C -0.52 -29.66 9.15 25.60 0.23 -29.43 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 9 C 0.02 0.98 1.85 -11.49 -0.02 0.96 16 10 H 0.02 0.93 7.21 -2.39 -0.02 0.92 16 11 C -0.12 -5.16 4.73 30.67 0.15 -5.01 16 12 C -0.11 -3.70 6.09 30.65 0.19 -3.51 16 13 C 0.06 1.85 5.44 86.33 0.47 2.32 16 14 N -0.54 -18.02 4.60 -900.89 -4.15 -22.17 16 15 C 0.10 2.60 4.79 85.56 0.41 3.01 16 16 C -0.10 -2.84 4.65 -19.83 -0.09 -2.94 16 17 C -0.12 -3.17 8.98 22.36 0.20 -2.97 16 18 C 0.09 2.13 6.70 22.49 0.15 2.28 16 19 O -0.51 -10.60 13.50 -92.98 -1.26 -11.86 16 20 C -0.12 -2.41 9.98 22.36 0.22 -2.18 16 21 C -0.14 -3.09 10.02 22.30 0.22 -2.87 16 22 C 0.09 2.52 7.24 22.37 0.16 2.69 16 23 F -0.14 -4.08 16.76 44.97 0.75 -3.33 16 24 C 0.09 3.72 4.53 86.33 0.39 4.11 16 25 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 26 H 0.03 1.48 3.34 -2.38 -0.01 1.47 16 27 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.09 2.23 7.96 -2.38 -0.02 2.21 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 2.32 7.82 -2.39 -0.02 2.30 16 33 H 0.05 1.37 7.86 -2.39 -0.02 1.35 16 34 H 0.14 3.41 8.00 -2.91 -0.02 3.39 16 35 H 0.41 5.44 9.06 -74.06 -0.67 4.77 16 36 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 2.34 6.83 -2.39 -0.02 2.32 16 Total: -1.00 -69.19 314.52 0.78 -68.41 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.31 Total: 12.64 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.14 Total: -32.17 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.85 Total: -81.43 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.26 Total: -11.86 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.75 Total: -3.33 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.74 kcal Total: -69.19 0.78 -68.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140048607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.763 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds