Wall clock time and date at job start Wed Apr 15 2020 11:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48503 * 109.47171 * 240.00227 * 3 2 1 5 5 H 1.48502 * 109.47423 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47137 * 120.00310 * 3 2 1 7 7 C 1.37879 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99634 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.50176 * 300.08374 * 9 7 2 11 11 C 1.53115 * 109.50257 * 60.19742 * 9 7 2 12 12 C 1.53113 * 109.16176 * 177.59330 * 11 9 7 13 13 C 1.53036 * 109.28042 * 302.34802 * 12 11 9 14 14 N 1.46854 * 109.52035 * 59.17766 * 13 12 11 15 15 C 1.46902 * 110.99901 * 174.16222 * 14 13 12 16 16 C 1.50708 * 109.46974 * 294.21014 * 15 14 13 17 17 C 1.38245 * 119.95748 * 105.00097 * 16 15 14 18 18 C 1.38134 * 120.08224 * 179.97438 * 17 16 15 19 19 C 1.38766 * 119.99234 * 359.97438 * 18 17 16 20 20 O 1.35905 * 120.04429 * 179.97438 * 19 18 17 21 21 C 1.38675 * 119.91470 * 0.02562 * 19 18 17 22 22 C 1.38386 * 119.91988 * 359.97438 * 21 19 18 23 23 F 1.35102 * 119.99708 * 179.97438 * 22 21 19 24 24 C 1.46843 * 111.19650 * 298.25946 * 14 13 12 25 25 H 0.97007 * 120.00164 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.52513 * 297.50163 * 11 9 7 27 27 H 1.09002 * 109.52070 * 57.68998 * 11 9 7 28 28 H 1.08999 * 109.50626 * 62.28948 * 12 11 9 29 29 H 1.08998 * 109.50639 * 182.40682 * 12 11 9 30 30 H 1.08997 * 109.46661 * 299.16326 * 13 12 11 31 31 H 1.08997 * 109.46715 * 179.18934 * 13 12 11 32 32 H 1.08993 * 109.47202 * 174.21142 * 15 14 13 33 33 H 1.08999 * 109.47016 * 54.20633 * 15 14 13 34 34 H 1.08004 * 119.96005 * 359.97438 * 17 16 15 35 35 H 1.07994 * 120.00472 * 179.97438 * 18 17 16 36 36 H 0.96702 * 113.99191 * 270.01930 * 20 19 18 37 37 H 1.08003 * 120.03923 * 179.72849 * 21 19 18 38 38 H 1.09003 * 109.45786 * 181.76354 * 24 14 13 39 39 H 1.09001 * 109.46372 * 301.72244 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6233 -2.5570 0.8888 11 6 0.3737 -2.5829 -1.2526 12 6 -0.3419 -3.9363 -1.2753 13 6 0.6981 -5.0584 -1.2390 14 7 1.5112 -4.9347 -0.0223 15 6 2.4283 -6.0739 0.1160 16 6 1.6332 -7.3350 0.3363 17 6 1.4897 -8.2490 -0.6910 18 6 0.7619 -9.4060 -0.4917 19 6 0.1742 -9.6522 0.7410 20 8 -0.5425 -10.7900 0.9380 21 6 0.3183 -8.7353 1.7713 22 6 1.0482 -7.5773 1.5678 23 9 1.1891 -6.6827 2.5703 24 6 2.2448 -3.6628 -0.0011 25 1 -0.4851 0.8401 0.0004 26 1 -0.3643 -1.7809 -1.2347 27 1 0.9972 -2.4856 -2.1414 28 1 -0.9951 -4.0173 -0.4065 29 1 -0.9350 -4.0192 -2.1860 30 1 1.3422 -4.9853 -2.1152 31 1 0.1914 -6.0235 -1.2405 32 1 3.0886 -5.9074 0.9670 33 1 3.0234 -6.1735 -0.7917 34 1 1.9472 -8.0581 -1.6505 35 1 0.6503 -10.1189 -1.2952 36 1 -1.4825 -10.7038 0.7284 37 1 -0.1419 -8.9228 2.7303 38 1 2.8615 -3.6143 0.8964 39 1 2.8817 -3.5961 -0.8832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140128756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:46 Heat of formation + Delta-G solvation = -88.741364 kcal Electronic energy + Delta-G solvation = -21862.434363 eV Core-core repulsion = 18490.196123 eV Total energy + Delta-G solvation = -3372.238240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.82297 -40.77536 -39.70141 -37.68777 -35.57129 -33.73497 -31.87629 -31.57000 -30.91450 -26.91435 -26.82166 -23.92984 -23.84676 -23.25780 -22.06080 -20.35290 -19.63279 -18.44461 -17.77938 -17.33425 -16.99706 -16.81399 -16.42752 -16.10424 -15.73655 -15.39744 -15.01217 -14.91479 -14.69243 -14.49557 -14.33899 -13.90444 -13.51919 -13.19298 -12.96053 -12.82643 -12.68944 -12.51735 -12.44628 -12.20343 -11.83490 -11.71784 -11.67847 -11.38204 -10.88725 -10.67483 -10.37538 -9.91062 -9.50352 -9.11723 -8.07399 -6.21936 0.07118 0.18948 1.41770 1.43316 1.50852 2.39381 2.45526 3.04272 3.19287 3.20020 3.55695 3.71227 3.80108 4.07805 4.19560 4.23492 4.32342 4.39268 4.49557 4.60399 4.64446 4.75471 4.81869 4.89185 4.96993 5.05358 5.08882 5.11687 5.17966 5.31266 5.34612 5.40340 5.52477 5.63591 5.79545 5.96077 6.13087 6.20949 6.33080 6.45800 6.81580 6.90634 7.45930 8.97130 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035135 B = 0.003894 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.727461 B = 7189.290648 C = 7352.804150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.053 3.947 10 H -0.009 1.009 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.070 3.930 14 N -0.547 5.547 15 C 0.095 3.905 16 C -0.128 4.128 17 C -0.065 4.065 18 C -0.150 4.150 19 C 0.136 3.864 20 O -0.502 6.502 21 C -0.195 4.195 22 C 0.115 3.885 23 F -0.147 7.147 24 C 0.084 3.916 25 H 0.260 0.740 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.415 0.585 37 H 0.144 0.856 38 H 0.052 0.948 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -20.259 -3.176 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.009 0.991 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.271 5.271 15 C -0.032 4.032 16 C -0.130 4.130 17 C -0.083 4.083 18 C -0.168 4.168 19 C 0.091 3.909 20 O -0.316 6.316 21 C -0.214 4.214 22 C 0.095 3.905 23 F -0.125 7.125 24 C -0.044 4.044 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.275 0.725 37 H 0.162 0.838 38 H 0.071 0.929 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.047 -20.332 -2.562 20.493 hybrid contribution 0.342 1.711 -0.131 1.750 sum 0.389 -18.621 -2.693 18.819 Atomic orbital electron populations 1.70038 1.07225 1.27119 1.51127 1.25729 0.95656 1.02357 0.94736 0.85664 0.78405 0.79057 0.78821 1.19485 1.20942 1.19795 1.21500 0.93018 0.92152 1.50972 0.92953 1.18576 0.92998 0.91337 0.93684 0.99091 1.21441 0.99057 0.96175 0.97360 1.21581 0.97589 0.95038 1.00639 1.22011 0.95120 0.98833 0.89823 1.61920 1.24648 1.01520 1.39049 1.20928 0.93103 0.87414 1.01730 1.19958 1.01924 0.97892 0.93189 1.21087 0.96765 0.92085 0.98398 1.21682 0.99721 0.98198 0.97195 1.18149 0.95460 0.85549 0.91756 1.84760 1.26503 1.30466 1.89896 1.21488 1.03789 0.93698 1.02474 1.17598 0.99496 0.87889 0.85512 1.91496 1.94036 1.67305 1.59691 1.21959 0.95322 0.88552 0.98542 0.93084 0.92525 0.95489 0.93847 0.91006 0.94762 0.89813 0.90846 0.92049 0.82484 0.82062 0.72457 0.83807 0.92939 0.95933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 11.36 21.45 0.24 -53.89 16 2 C 0.01 0.79 5.31 84.66 0.45 1.24 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 8 H 0.05 2.88 7.74 -2.92 -0.02 2.86 16 9 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 10 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 11 C -0.10 -4.96 5.03 30.67 0.15 -4.80 16 12 C -0.11 -4.30 6.09 30.64 0.19 -4.12 16 13 C 0.07 2.30 5.30 86.32 0.46 2.76 16 14 N -0.55 -20.06 4.65 -900.94 -4.19 -24.25 16 15 C 0.10 2.79 4.78 85.56 0.41 3.20 16 16 C -0.13 -3.28 4.42 -19.80 -0.09 -3.37 16 17 C -0.06 -1.21 8.94 22.25 0.20 -1.02 16 18 C -0.15 -2.43 9.99 22.37 0.22 -2.21 16 19 C 0.14 2.54 6.70 22.50 0.15 2.69 16 20 O -0.50 -7.45 13.50 -92.48 -1.25 -8.70 16 21 C -0.20 -4.49 9.97 22.41 0.22 -4.26 16 22 C 0.11 3.23 7.24 22.36 0.16 3.39 16 23 F -0.15 -5.01 16.75 44.97 0.75 -4.26 16 24 C 0.08 3.62 4.68 86.32 0.40 4.02 16 25 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 26 H 0.06 3.12 6.16 -2.39 -0.01 3.11 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 2.37 6.55 -2.39 -0.02 2.35 16 32 H 0.07 2.25 7.92 -2.39 -0.02 2.23 16 33 H 0.06 1.54 7.93 -2.39 -0.02 1.53 16 34 H 0.16 2.19 8.00 -2.91 -0.02 2.16 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.42 2.11 9.06 -74.06 -0.67 1.44 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.05 2.30 8.02 -2.39 -0.02 2.28 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -67.66 321.04 1.09 -66.57 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.38 Total: 8.16 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 3.12 Total: -29.93 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -3.94 Total: -78.14 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.25 Total: -8.70 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.75 Total: -4.26 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.66 1.09 -66.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140128756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.175 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds