Wall clock time and date at job start Wed Apr 15 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47367 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.47221 * 30.00475 * 3 2 1 6 6 H 1.48511 * 109.46964 * 150.00398 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00184 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.53589 * 60.09509 * 9 7 2 11 11 C 1.53120 * 109.50236 * 300.00157 * 9 7 2 12 12 C 1.53122 * 109.15860 * 182.40181 * 11 9 7 13 13 C 1.53042 * 109.27787 * 57.65532 * 12 11 9 14 14 N 1.46841 * 109.52022 * 300.81703 * 13 12 11 15 15 C 1.46902 * 111.00180 * 185.83892 * 14 13 12 16 16 C 1.50697 * 109.47614 * 164.19319 * 15 14 13 17 17 C 1.38256 * 119.95430 * 105.43665 * 16 15 14 18 18 C 1.38135 * 120.07737 * 180.02562 * 17 16 15 19 19 C 1.38771 * 119.99395 * 0.23635 * 18 17 16 20 20 O 1.35901 * 120.04329 * 179.72515 * 19 18 17 21 21 C 1.38669 * 119.91537 * 359.46616 * 19 18 17 22 22 C 1.38383 * 119.91874 * 0.57520 * 21 19 18 23 23 F 1.35100 * 119.99654 * 179.70010 * 22 21 19 24 24 C 1.46847 * 111.20078 * 61.74607 * 14 13 12 25 25 H 0.97002 * 119.99978 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.52470 * 62.50096 * 11 9 7 27 27 H 1.08998 * 109.57368 * 302.33487 * 11 9 7 28 28 H 1.08997 * 109.50514 * 297.71515 * 12 11 9 29 29 H 1.09001 * 109.50235 * 177.59054 * 12 11 9 30 30 H 1.09000 * 109.46014 * 180.80268 * 13 12 11 31 31 H 1.08999 * 109.46292 * 60.83264 * 13 12 11 32 32 H 1.09001 * 109.46646 * 44.19470 * 15 14 13 33 33 H 1.09003 * 109.47356 * 284.20168 * 15 14 13 34 34 H 1.07995 * 119.96020 * 0.02709 * 17 16 15 35 35 H 1.07993 * 120.00431 * 179.97438 * 18 17 16 36 36 H 0.96702 * 114.00487 * 89.98938 * 20 19 18 37 37 H 1.08001 * 120.04496 * 180.30092 * 21 19 18 38 38 H 1.09000 * 109.46320 * 58.27091 * 24 14 13 39 39 H 1.09001 * 109.46430 * 178.24049 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8764 -0.6822 0.8894 11 6 4.0222 -0.4722 -1.2511 12 6 5.5522 -0.5291 -1.2744 13 6 6.0039 -1.9910 -1.2430 14 7 5.4907 -2.6371 -0.0284 15 6 6.0187 -4.0015 0.1054 16 6 5.8007 -4.4886 1.5147 17 6 4.8110 -5.4172 1.7788 18 6 4.6087 -5.8651 3.0698 19 6 5.3960 -5.3792 4.1041 20 8 5.1941 -5.8150 5.3754 21 6 6.3927 -4.4525 3.8379 22 6 6.5918 -4.0056 2.5435 23 9 7.5583 -3.0982 2.2833 24 6 4.0224 -2.6367 -0.0065 25 1 -0.4850 0.8401 0.0004 26 1 3.6968 0.5678 -1.2296 27 1 3.6260 -0.9596 -2.1419 28 1 5.9491 -0.0068 -0.4040 29 1 5.9202 -0.0540 -2.1838 30 1 7.0931 -2.0346 -1.2451 31 1 5.6181 -2.5093 -2.1208 32 1 7.0855 -4.0017 -0.1182 33 1 5.5014 -4.6612 -0.5912 34 1 4.1954 -5.7928 0.9749 35 1 3.8350 -6.5901 3.2748 36 1 5.7137 -6.5959 5.6107 37 1 7.0099 -4.0767 4.6405 38 1 3.6459 -3.1520 -0.8902 39 1 3.6723 -3.1493 0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140128757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:48 Heat of formation + Delta-G solvation = -60.931706 kcal Electronic energy + Delta-G solvation = -22129.363579 eV Core-core repulsion = 18758.331257 eV Total energy + Delta-G solvation = -3371.032322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.71490 -39.77724 -38.47621 -36.73211 -33.94487 -32.26257 -30.74148 -30.29334 -29.88084 -25.85520 -24.89607 -22.96893 -22.80881 -21.23104 -21.06223 -18.88339 -18.73254 -16.78533 -16.73281 -16.31432 -15.84752 -15.72981 -15.28031 -14.65488 -14.36643 -14.23274 -13.81701 -13.65449 -13.47395 -13.15991 -12.84060 -12.47595 -12.38720 -12.18750 -11.74361 -11.44813 -11.28958 -11.07293 -11.01341 -10.83016 -10.45492 -10.05253 -9.92035 -9.65592 -9.10869 -8.96211 -8.88368 -8.49403 -8.47746 -7.84170 -6.03961 -4.02710 1.03522 1.16571 3.30968 3.39401 3.42711 3.46769 3.87568 4.38275 4.45874 4.53061 4.73080 4.81432 4.98684 5.24550 5.27995 5.40968 5.48710 5.53993 5.61194 5.73656 5.83265 5.99534 6.00123 6.02298 6.16911 6.25488 6.29614 6.31492 6.36319 6.49355 6.63781 6.73370 6.82558 6.86498 7.23326 7.41437 7.46827 7.57447 7.68823 7.89018 8.55165 8.98950 9.59226 11.09316 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.005485 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.114245 B = 5103.943680 C = 5816.083316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.034 0.966 11 C -0.122 4.122 12 C -0.120 4.120 13 C 0.066 3.934 14 N -0.537 5.537 15 C 0.095 3.905 16 C -0.113 4.113 17 C -0.066 4.066 18 C -0.155 4.155 19 C 0.129 3.871 20 O -0.495 6.495 21 C -0.188 4.188 22 C 0.141 3.859 23 F -0.128 7.128 24 C 0.077 3.923 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.390 0.610 37 H 0.138 0.862 38 H 0.027 0.973 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.953 -12.130 3.425 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.052 0.948 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.062 4.062 14 N -0.262 5.262 15 C -0.032 4.032 16 C -0.115 4.115 17 C -0.085 4.085 18 C -0.174 4.174 19 C 0.085 3.915 20 O -0.305 6.305 21 C -0.208 4.208 22 C 0.121 3.879 23 F -0.107 7.107 24 C -0.050 4.050 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.246 0.754 37 H 0.156 0.844 38 H 0.045 0.955 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.604 -11.233 3.832 18.819 hybrid contribution 0.454 0.332 -0.701 0.898 sum 15.059 -10.901 3.131 18.852 Atomic orbital electron populations 1.69900 1.06289 1.26892 1.51027 1.24971 0.94654 0.99016 0.94418 0.86838 0.80075 0.83507 0.77822 1.20725 1.22630 1.18821 1.20985 0.88756 0.94444 1.50889 0.91005 1.19154 0.95954 0.91116 0.93684 0.94768 1.22024 0.92636 1.00236 1.01078 1.21655 0.98093 0.95116 1.00874 1.21977 0.98489 0.95488 0.90248 1.61993 1.10668 1.15366 1.38166 1.20880 1.00447 0.90638 0.91267 1.19917 0.97044 0.98599 0.95904 1.20860 0.95550 0.95330 0.96746 1.21410 1.01382 1.02507 0.92108 1.18085 0.94161 0.95387 0.83895 1.84860 1.68904 1.50136 1.26566 1.21317 1.01249 1.02262 0.95925 1.17184 0.88482 0.89487 0.92715 1.91512 1.60214 1.64269 1.94676 1.22125 0.83404 0.99759 0.99704 0.92727 0.93569 0.92555 0.91783 0.92721 0.91805 0.95304 0.90282 0.93634 0.84650 0.84831 0.75442 0.84429 0.95522 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.89 22.58 24.35 -169.99 -4.14 18.44 16 4 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 7 C -0.51 -14.53 9.15 -34.44 -0.31 -14.85 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.03 0.89 7.21 -51.93 -0.37 0.51 16 11 C -0.12 -2.68 4.73 -26.61 -0.13 -2.81 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C 0.07 1.06 5.44 -3.83 -0.02 1.04 16 14 N -0.54 -9.43 4.60 -236.11 -1.09 -10.51 16 15 C 0.10 1.35 4.79 -4.98 -0.02 1.33 16 16 C -0.11 -1.60 4.65 -104.53 -0.49 -2.08 16 17 C -0.07 -0.83 9.03 -39.61 -0.36 -1.19 16 18 C -0.16 -1.84 9.99 -39.42 -0.39 -2.23 16 19 C 0.13 1.57 6.70 -39.23 -0.26 1.30 16 20 O -0.49 -5.15 13.50 -19.43 -0.26 -5.41 16 21 C -0.19 -2.42 9.97 -39.37 -0.39 -2.81 16 22 C 0.14 2.04 7.24 -39.44 -0.29 1.76 16 23 F -0.13 -1.99 16.76 2.25 0.04 -1.95 16 24 C 0.08 1.57 4.53 -3.83 -0.02 1.55 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.05 1.08 3.34 -51.93 -0.17 0.90 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 33 H 0.05 0.59 7.86 -51.93 -0.41 0.19 16 34 H 0.14 1.50 7.99 -52.49 -0.42 1.08 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.39 1.87 9.06 45.56 0.41 2.28 16 37 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.42 6.83 -51.93 -0.35 1.06 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -32.67 314.51 -7.74 -40.41 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.69 Total: 0.48 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.11 Total: -19.00 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.31 Total: -37.71 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.26 Total: -5.41 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.67 -7.74 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140128757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.519 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds