Wall clock time and date at job start Wed Apr 15 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47367 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.47221 * 30.00475 * 3 2 1 6 6 H 1.48511 * 109.46964 * 150.00398 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00184 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.53589 * 60.09509 * 9 7 2 11 11 C 1.53120 * 109.50236 * 300.00157 * 9 7 2 12 12 C 1.53122 * 109.15860 * 182.40181 * 11 9 7 13 13 C 1.53042 * 109.27787 * 57.65532 * 12 11 9 14 14 N 1.46841 * 109.52022 * 300.81703 * 13 12 11 15 15 C 1.46902 * 111.00180 * 185.83892 * 14 13 12 16 16 C 1.50697 * 109.47614 * 164.19319 * 15 14 13 17 17 C 1.38256 * 119.95430 * 105.43665 * 16 15 14 18 18 C 1.38135 * 120.07737 * 180.02562 * 17 16 15 19 19 C 1.38771 * 119.99395 * 0.23635 * 18 17 16 20 20 O 1.35901 * 120.04329 * 179.72515 * 19 18 17 21 21 C 1.38669 * 119.91537 * 359.46616 * 19 18 17 22 22 C 1.38383 * 119.91874 * 0.57520 * 21 19 18 23 23 F 1.35100 * 119.99654 * 179.70010 * 22 21 19 24 24 C 1.46847 * 111.20078 * 61.74607 * 14 13 12 25 25 H 0.97002 * 119.99978 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.52470 * 62.50096 * 11 9 7 27 27 H 1.08998 * 109.57368 * 302.33487 * 11 9 7 28 28 H 1.08997 * 109.50514 * 297.71515 * 12 11 9 29 29 H 1.09001 * 109.50235 * 177.59054 * 12 11 9 30 30 H 1.09000 * 109.46014 * 180.80268 * 13 12 11 31 31 H 1.08999 * 109.46292 * 60.83264 * 13 12 11 32 32 H 1.09001 * 109.46646 * 44.19470 * 15 14 13 33 33 H 1.09003 * 109.47356 * 284.20168 * 15 14 13 34 34 H 1.07995 * 119.96020 * 0.02709 * 17 16 15 35 35 H 1.07993 * 120.00431 * 179.97438 * 18 17 16 36 36 H 0.96702 * 114.00487 * 89.98938 * 20 19 18 37 37 H 1.08001 * 120.04496 * 180.30092 * 21 19 18 38 38 H 1.09000 * 109.46320 * 58.27091 * 24 14 13 39 39 H 1.09001 * 109.46430 * 178.24049 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8764 -0.6822 0.8894 11 6 4.0222 -0.4722 -1.2511 12 6 5.5522 -0.5291 -1.2744 13 6 6.0039 -1.9910 -1.2430 14 7 5.4907 -2.6371 -0.0284 15 6 6.0187 -4.0015 0.1054 16 6 5.8007 -4.4886 1.5147 17 6 4.8110 -5.4172 1.7788 18 6 4.6087 -5.8651 3.0698 19 6 5.3960 -5.3792 4.1041 20 8 5.1941 -5.8150 5.3754 21 6 6.3927 -4.4525 3.8379 22 6 6.5918 -4.0056 2.5435 23 9 7.5583 -3.0982 2.2833 24 6 4.0224 -2.6367 -0.0065 25 1 -0.4850 0.8401 0.0004 26 1 3.6968 0.5678 -1.2296 27 1 3.6260 -0.9596 -2.1419 28 1 5.9491 -0.0068 -0.4040 29 1 5.9202 -0.0540 -2.1838 30 1 7.0931 -2.0346 -1.2451 31 1 5.6181 -2.5093 -2.1208 32 1 7.0855 -4.0017 -0.1182 33 1 5.5014 -4.6612 -0.5912 34 1 4.1954 -5.7928 0.9749 35 1 3.8350 -6.5901 3.2748 36 1 5.7137 -6.5959 5.6107 37 1 7.0099 -4.0767 4.6405 38 1 3.6459 -3.1520 -0.8902 39 1 3.6723 -3.1493 0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140128757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:47 Heat of formation + Delta-G solvation = -84.322459 kcal Electronic energy + Delta-G solvation = -22130.377879 eV Core-core repulsion = 18758.331257 eV Total energy + Delta-G solvation = -3372.046621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.81627 -40.77950 -39.83326 -37.72956 -35.60811 -34.05565 -32.11189 -31.64762 -31.05322 -27.24110 -26.67433 -24.17531 -23.92797 -22.87668 -22.22551 -20.49106 -19.66997 -18.84425 -17.77584 -17.42647 -17.19294 -16.81003 -16.56313 -15.96411 -15.84861 -15.52064 -15.23933 -14.90222 -14.78694 -14.68508 -14.39951 -14.02621 -13.80321 -13.48901 -12.99658 -12.81194 -12.68724 -12.66084 -12.35767 -12.09307 -11.88494 -11.75817 -11.69077 -11.42219 -11.01337 -10.83729 -10.61438 -9.91251 -9.49847 -9.17863 -8.31165 -6.33803 0.07165 0.18436 1.27497 1.34798 1.45565 2.31700 2.42382 2.99750 3.04882 3.13935 3.55159 3.73453 3.79329 4.01998 4.06890 4.15024 4.20172 4.33226 4.43984 4.52408 4.56600 4.68368 4.75897 4.81480 4.82846 4.93782 5.04663 5.05747 5.06860 5.15384 5.23548 5.31052 5.35665 5.45493 5.63347 5.72844 5.80512 6.16261 6.24959 6.35178 6.73145 6.82630 7.31817 8.85603 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.005485 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.114245 B = 5103.943680 C = 5816.083316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.300 1.300 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.035 0.965 9 C 0.019 3.981 10 H 0.015 0.985 11 C -0.122 4.122 12 C -0.115 4.115 13 C 0.065 3.935 14 N -0.549 5.549 15 C 0.097 3.903 16 C -0.130 4.130 17 C -0.071 4.071 18 C -0.158 4.158 19 C 0.134 3.866 20 O -0.503 6.503 21 C -0.196 4.196 22 C 0.122 3.878 23 F -0.139 7.139 24 C 0.093 3.907 25 H 0.265 0.735 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.415 0.585 37 H 0.149 0.851 38 H 0.023 0.977 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.149 -12.505 3.153 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.228 1.228 6 H -0.179 1.179 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.000 4.000 10 H 0.033 0.967 11 C -0.159 4.159 12 C -0.152 4.152 13 C -0.062 4.062 14 N -0.273 5.273 15 C -0.030 4.030 16 C -0.131 4.131 17 C -0.090 4.090 18 C -0.176 4.176 19 C 0.089 3.911 20 O -0.317 6.317 21 C -0.215 4.215 22 C 0.102 3.898 23 F -0.117 7.117 24 C -0.035 4.035 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.275 0.725 37 H 0.167 0.833 38 H 0.041 0.959 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.838 -11.644 3.561 20.779 hybrid contribution -0.277 0.304 -0.522 0.664 sum 16.561 -11.339 3.039 20.300 Atomic orbital electron populations 1.70039 1.08044 1.27919 1.52940 1.25789 0.95361 1.02754 0.94288 0.85840 0.78891 0.78989 0.78673 1.19007 1.22757 1.17877 1.21311 0.91348 0.93001 1.49778 0.94660 1.19067 0.93016 0.93833 0.94102 0.96696 1.21913 0.95921 0.98728 0.99345 1.21633 0.94608 0.96859 1.02139 1.22064 1.00198 0.94073 0.89903 1.61907 1.08288 1.17840 1.39302 1.20947 1.01364 0.88915 0.91740 1.20017 0.97767 0.99436 0.95902 1.21073 0.95248 0.95047 0.97594 1.21675 1.01575 1.02606 0.91779 1.18158 0.93526 0.94896 0.84534 1.84797 1.69634 1.51652 1.25583 1.21493 1.01762 1.02464 0.95773 1.17415 0.88860 0.89983 0.93548 1.91476 1.60682 1.64767 1.94805 1.21749 0.85831 0.96942 0.98974 0.92592 0.94949 0.92857 0.92454 0.89658 0.88790 0.94385 0.88554 0.92317 0.83469 0.82910 0.72487 0.83345 0.95882 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.02 0.90 5.45 84.65 0.46 1.36 16 3 Si 0.95 46.92 24.35 68.60 1.67 48.59 16 4 H -0.26 -12.29 6.89 99.48 0.69 -11.61 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.25 -12.09 6.53 99.48 0.65 -11.44 16 7 C -0.52 -30.08 9.15 25.60 0.23 -29.84 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 9 C 0.02 0.92 1.85 -11.49 -0.02 0.90 16 10 H 0.01 0.77 7.21 -2.38 -0.02 0.76 16 11 C -0.12 -5.16 4.73 30.68 0.15 -5.01 16 12 C -0.11 -3.77 6.09 30.65 0.19 -3.58 16 13 C 0.06 1.88 5.44 86.33 0.47 2.35 16 14 N -0.55 -18.19 4.60 -900.93 -4.15 -22.34 16 15 C 0.10 2.55 4.79 85.56 0.41 2.96 16 16 C -0.13 -3.49 4.65 -19.80 -0.09 -3.58 16 17 C -0.07 -1.70 9.03 22.25 0.20 -1.50 16 18 C -0.16 -3.47 9.99 22.37 0.22 -3.25 16 19 C 0.13 3.02 6.70 22.50 0.15 3.17 16 20 O -0.50 -9.38 13.50 -92.43 -1.25 -10.63 16 21 C -0.20 -4.81 9.97 22.41 0.22 -4.58 16 22 C 0.12 3.40 7.24 22.36 0.16 3.56 16 23 F -0.14 -4.16 16.76 44.97 0.75 -3.41 16 24 C 0.09 3.75 4.53 86.33 0.39 4.14 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.03 1.45 3.34 -2.39 -0.01 1.44 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 2.21 7.96 -2.39 -0.02 2.19 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 2.19 7.82 -2.39 -0.02 2.17 16 33 H 0.06 1.39 7.86 -2.39 -0.02 1.37 16 34 H 0.15 3.06 7.99 -2.91 -0.02 3.04 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.42 2.93 9.06 -74.06 -0.67 2.26 16 37 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.05 2.33 6.83 -2.39 -0.02 2.32 16 Total: -1.00 -71.61 314.51 0.78 -70.83 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.31 Total: 9.99 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 3.14 Total: -32.90 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -3.85 Total: -82.47 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.25 Total: -10.63 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.75 Total: -3.41 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.67 Total: 48.59 kcal Total: -71.61 0.78 -70.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140128757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.494 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds