Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48502 * 109.47268 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47158 * 300.00481 * 3 2 1 6 6 H 1.48501 * 109.46552 * 60.00681 * 3 2 1 7 7 C 1.37885 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.57574 * 60.30132 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.60215 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.50701 * 109.47042 * 189.99790 * 13 12 11 15 15 C 1.38255 * 119.95492 * 105.00058 * 14 13 12 16 16 C 1.38135 * 120.07643 * 179.97438 * 15 14 13 17 17 C 1.38776 * 119.99476 * 359.97438 * 16 15 14 18 18 O 1.35895 * 120.04082 * 179.97438 * 17 16 15 19 19 C 1.38661 * 119.91404 * 359.97438 * 17 16 15 20 20 C 1.38386 * 119.92378 * 359.76803 * 19 17 16 21 21 F 1.35096 * 120.00078 * 180.23766 * 20 19 17 22 22 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 23 23 C 1.53042 * 109.52278 * 298.25596 * 22 12 11 24 24 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.52421 * 300.13228 * 9 7 2 26 26 H 1.08997 * 109.51083 * 57.64808 * 10 9 7 27 27 H 1.08998 * 109.48980 * 297.53740 * 10 9 7 28 28 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 29 29 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 30 30 H 1.08997 * 109.47358 * 309.99752 * 13 12 11 31 31 H 1.09001 * 109.47788 * 69.99563 * 13 12 11 32 32 H 1.07992 * 119.96195 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.00167 * 179.97438 * 16 15 14 34 34 H 0.96699 * 113.99866 * 89.99700 * 18 17 16 35 35 H 1.08003 * 120.03957 * 180.02562 * 19 17 16 36 36 H 1.08993 * 109.46313 * 58.27251 * 22 12 11 37 37 H 1.09000 * 109.46480 * 178.25361 * 22 12 11 38 38 H 1.08997 * 109.50758 * 179.11703 * 23 22 12 39 39 H 1.08998 * 109.50897 * 299.20258 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3962 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3749 -2.5858 -1.2534 11 6 -0.3411 -3.9381 -1.2769 12 7 0.6526 -5.0193 -1.2772 13 6 0.0062 -6.3284 -1.4391 14 6 1.0143 -7.4206 -1.1907 15 6 0.9797 -8.1360 -0.0081 16 6 1.9023 -9.1380 0.2220 17 6 2.8649 -9.4279 -0.7346 18 8 3.7732 -10.4131 -0.5090 19 6 2.8986 -8.7109 -1.9210 20 6 1.9694 -7.7114 -2.1502 21 9 1.9979 -7.0151 -3.3076 22 6 1.4748 -4.9852 -0.0610 23 6 2.2449 -3.6640 -0.0011 24 1 -0.4849 0.8401 0.0004 25 1 0.6225 -2.5570 0.8882 26 1 0.9992 -2.4890 -2.1416 27 1 -0.3629 -1.7836 -1.2375 28 1 -0.9548 -4.0086 -2.1750 29 1 -0.9757 -4.0284 -0.3954 30 1 -0.8124 -6.4202 -0.7252 31 1 -0.3842 -6.4180 -2.4529 32 1 0.2306 -7.9112 0.7365 33 1 1.8744 -9.6958 1.1464 34 1 3.4907 -11.2860 -0.8144 35 1 3.6467 -8.9351 -2.6671 36 1 0.8316 -5.0707 0.8147 37 1 2.1802 -5.8161 -0.0761 38 1 2.8430 -3.6323 0.9095 39 1 2.8991 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140129002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -87.061418 kcal Electronic energy + Delta-G solvation = -21892.844433 eV Core-core repulsion = 18520.679042 eV Total energy + Delta-G solvation = -3372.165392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.83624 -40.87383 -39.70935 -37.70955 -35.71303 -33.53849 -31.87066 -31.54062 -30.81001 -28.02141 -25.90910 -23.97252 -23.87921 -23.32441 -22.05671 -20.34783 -19.65473 -18.46604 -17.79703 -17.43643 -16.98404 -16.76964 -16.55992 -16.14346 -15.72027 -15.37850 -15.08852 -14.85315 -14.71418 -14.52326 -14.32112 -13.92741 -13.54578 -13.11054 -12.92821 -12.82008 -12.75137 -12.57435 -12.33998 -12.19168 -11.97826 -11.84928 -11.69094 -11.36950 -10.81311 -10.66968 -10.38203 -9.92610 -9.53352 -9.13473 -8.08290 -6.21135 0.03948 0.16505 1.39477 1.41446 1.52911 2.40984 2.43958 2.99776 3.13085 3.18871 3.52037 3.66978 3.77035 4.05888 4.19491 4.24909 4.29725 4.39250 4.48334 4.56373 4.66576 4.74826 4.80299 4.90156 4.94046 5.02157 5.06312 5.09559 5.21572 5.28857 5.31400 5.36060 5.55274 5.62588 5.77616 5.99767 6.01927 6.27740 6.30478 6.41451 6.82610 6.89642 7.46359 8.96544 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030453 B = 0.003947 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.222547 B = 7091.511042 C = 7292.527477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.047 0.953 9 C 0.046 3.954 10 C -0.095 4.095 11 C 0.070 3.930 12 N -0.540 5.540 13 C 0.095 3.905 14 C -0.133 4.133 15 C -0.068 4.068 16 C -0.151 4.151 17 C 0.137 3.863 18 O -0.502 6.502 19 C -0.193 4.193 20 C 0.116 3.884 21 F -0.142 7.142 22 C 0.072 3.928 23 C -0.100 4.100 24 H 0.260 0.740 25 H -0.007 1.007 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.416 0.584 35 H 0.147 0.853 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -22.051 -1.393 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.066 0.934 9 C 0.027 3.973 10 C -0.133 4.133 11 C -0.057 4.057 12 N -0.266 5.266 13 C -0.032 4.032 14 C -0.135 4.135 15 C -0.086 4.086 16 C -0.169 4.169 17 C 0.092 3.908 18 O -0.316 6.316 19 C -0.213 4.213 20 C 0.097 3.903 21 F -0.121 7.121 22 C -0.056 4.056 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.011 0.989 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.276 0.724 35 H 0.165 0.835 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.134 -21.388 -1.603 21.478 hybrid contribution -0.358 0.949 0.101 1.020 sum 0.777 -20.439 -1.502 20.509 Atomic orbital electron populations 1.70007 1.07030 1.26994 1.51543 1.25715 0.95714 1.02226 0.94818 0.85591 0.79019 0.79897 0.77661 1.19469 1.20558 1.20460 1.21603 0.92887 0.92378 1.50346 0.93450 1.18650 0.93084 0.92351 0.93211 1.21416 0.99173 0.94798 0.97926 1.22043 0.92803 0.91298 0.99593 1.62053 1.23632 1.02454 1.38418 1.21011 0.93791 0.85944 1.02423 1.19938 0.98624 0.99568 0.95328 1.21078 0.98821 0.93705 0.95010 1.21680 0.94353 0.99919 1.00983 1.18149 0.89276 0.91690 0.91654 1.84782 1.42313 1.20513 1.84015 1.21494 1.00837 0.98871 1.00065 1.17515 0.97152 0.92716 0.82955 1.91497 1.95884 1.77961 1.46759 1.21987 0.95948 0.97638 0.89980 1.21552 0.98088 0.94462 0.99733 0.93041 0.98912 0.95519 0.91750 0.90770 0.95812 0.92297 0.89788 0.82973 0.82297 0.72371 0.83512 0.95388 0.90738 0.93039 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 11.37 21.45 0.24 -53.38 16 2 C 0.01 0.78 5.31 84.66 0.45 1.23 16 3 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.53 -30.63 8.56 25.60 0.22 -30.41 16 8 H 0.05 2.71 7.75 -2.91 -0.02 2.69 16 9 C 0.05 2.37 2.16 -11.46 -0.02 2.35 16 10 C -0.09 -4.67 5.12 30.65 0.16 -4.51 16 11 C 0.07 2.75 5.42 86.32 0.47 3.22 16 12 N -0.54 -19.28 4.80 -900.96 -4.32 -23.60 16 13 C 0.10 2.62 5.09 85.56 0.44 3.06 16 14 C -0.13 -3.30 3.47 -19.80 -0.07 -3.37 16 15 C -0.07 -1.31 9.05 22.25 0.20 -1.10 16 16 C -0.15 -2.53 9.99 22.37 0.22 -2.30 16 17 C 0.14 2.52 6.70 22.50 0.15 2.68 16 18 O -0.50 -7.36 13.50 -92.36 -1.25 -8.60 16 19 C -0.19 -4.22 9.97 22.41 0.22 -4.00 16 20 C 0.12 3.07 7.24 22.36 0.16 3.24 16 21 F -0.14 -4.43 16.74 44.97 0.75 -3.68 16 22 C 0.07 2.62 4.92 86.33 0.42 3.05 16 23 C -0.10 -4.44 5.32 30.65 0.16 -4.28 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 3.53 6.17 -2.39 -0.01 3.51 16 28 H 0.07 2.64 8.12 -2.39 -0.02 2.62 16 29 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.44 7.88 -2.39 -0.02 1.42 16 31 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.15 2.37 8.00 -2.91 -0.02 2.35 16 33 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.42 1.57 9.06 -74.06 -0.67 0.89 16 35 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 2.49 6.20 -2.39 -0.01 2.48 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -67.13 320.14 1.02 -66.11 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.38 Total: 7.53 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.18 Total: -31.16 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -4.08 Total: -76.99 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.25 Total: -8.60 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.75 Total: -3.68 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.13 1.02 -66.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140129002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.948 kcal (2) G-P(sol) polarization free energy of solvation -67.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds