Wall clock time and date at job start Wed Apr 15 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.50642 * 299.91959 * 9 7 2 11 11 C 1.53114 * 109.50422 * 59.99962 * 9 7 2 12 12 C 1.53121 * 109.16368 * 177.59401 * 11 9 7 13 13 C 1.53038 * 109.27699 * 302.35015 * 12 11 9 14 14 N 1.46843 * 109.52803 * 59.17743 * 13 12 11 15 15 C 1.46901 * 111.00428 * 174.16203 * 14 13 12 16 16 C 1.50705 * 109.47056 * 66.04440 * 15 14 13 17 17 C 1.38168 * 119.95832 * 269.72851 * 16 15 14 18 18 C 1.38725 * 119.99437 * 179.70430 * 17 16 15 19 19 O 1.35897 * 120.04737 * 180.29229 * 18 17 16 20 20 C 1.38711 * 119.91348 * 0.57012 * 18 17 16 21 21 C 1.38347 * 119.91717 * 359.72476 * 20 18 17 22 22 F 1.35100 * 119.99264 * 180.02562 * 21 20 18 23 23 C 1.38205 * 119.95656 * 90.00072 * 16 15 14 24 24 C 1.46853 * 111.19474 * 298.25750 * 14 13 12 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.52572 * 297.49743 * 11 9 7 27 27 H 1.09001 * 109.52506 * 57.62795 * 11 9 7 28 28 H 1.08997 * 109.50352 * 62.28382 * 12 11 9 29 29 H 1.08998 * 109.50762 * 182.41003 * 12 11 9 30 30 H 1.08999 * 109.46483 * 179.19731 * 13 12 11 31 31 H 1.09000 * 109.46408 * 299.15969 * 13 12 11 32 32 H 1.09004 * 109.47135 * 186.04337 * 15 14 13 33 33 H 1.08994 * 109.46596 * 306.04375 * 15 14 13 34 34 H 1.08002 * 120.00410 * 359.97438 * 17 16 15 35 35 H 0.96698 * 114.00394 * 270.27877 * 19 18 17 36 36 H 1.07995 * 120.04319 * 179.70560 * 20 18 17 37 37 H 1.08000 * 119.95779 * 359.97438 * 23 16 15 38 38 H 1.08995 * 109.46140 * 301.72645 * 24 14 13 39 39 H 1.08998 * 109.46036 * 181.75426 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6256 -2.5583 0.8902 11 6 0.3700 -2.5807 -1.2501 12 6 -0.3457 -3.9342 -1.2730 13 6 0.6944 -5.0563 -1.2416 14 7 1.5111 -4.9348 -0.0273 15 6 2.4286 -6.0742 0.1063 16 6 3.4396 -6.0388 -1.0108 17 6 3.1776 -6.6926 -2.1995 18 6 4.1050 -6.6553 -3.2305 19 8 3.8459 -7.2930 -4.4022 20 6 5.2998 -5.9711 -3.0618 21 6 5.5611 -5.3228 -1.8678 22 9 6.7240 -4.6555 -1.7021 23 6 4.6300 -5.3570 -0.8428 24 6 2.2449 -3.6630 -0.0061 25 1 -0.4850 0.8401 0.0004 26 1 -0.3680 -1.7788 -1.2286 27 1 0.9906 -2.4808 -2.1406 28 1 -0.9962 -4.0166 -0.4023 29 1 -0.9415 -4.0155 -2.1821 30 1 0.1876 -6.0214 -1.2434 31 1 1.3358 -4.9816 -2.1197 32 1 2.9442 -6.0151 1.0649 33 1 1.8627 -7.0043 0.0548 34 1 2.2490 -7.2290 -2.3276 35 1 4.1466 -8.2117 -4.4250 36 1 6.0253 -5.9447 -3.8613 37 1 4.8344 -4.8500 0.0886 38 1 2.8790 -3.5948 -0.8900 39 1 2.8642 -3.6159 0.8896 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237276550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:01 Heat of formation + Delta-G solvation = -89.356904 kcal Electronic energy + Delta-G solvation = -22216.457242 eV Core-core repulsion = 18844.192310 eV Total energy + Delta-G solvation = -3372.264931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -50.00576 -41.15722 -39.61607 -37.64580 -35.60752 -33.83136 -31.82125 -31.42617 -30.67909 -27.42246 -26.91968 -24.07480 -23.88268 -22.90939 -22.32842 -20.36234 -19.23216 -18.42884 -17.80347 -17.57278 -17.23504 -16.85424 -16.64754 -16.14000 -15.78243 -15.58012 -15.39847 -14.89987 -14.77325 -14.38308 -14.11929 -13.81166 -13.40028 -13.26836 -12.86814 -12.83951 -12.77438 -12.55758 -12.48032 -12.25410 -11.80321 -11.78735 -11.69951 -11.38877 -10.89637 -10.66758 -10.38084 -9.88726 -9.66901 -9.18018 -8.08659 -6.22310 0.04050 0.04430 1.39456 1.40442 1.48066 2.36401 2.42337 2.88727 3.18114 3.19212 3.38937 3.67897 3.92088 4.03174 4.20270 4.22285 4.26669 4.33012 4.49125 4.62392 4.68044 4.77962 4.86307 4.93396 4.97431 4.98965 5.02725 5.12521 5.17362 5.20112 5.33206 5.43727 5.53403 5.62929 5.72437 5.96441 6.11635 6.20481 6.33499 6.45404 6.78842 6.90077 7.45230 8.95664 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.005580 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.556947 B = 5017.017530 C = 5869.869304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.051 3.949 10 H -0.001 1.001 11 C -0.104 4.104 12 C -0.113 4.113 13 C 0.063 3.937 14 N -0.532 5.532 15 C 0.091 3.909 16 C -0.072 4.072 17 C -0.143 4.143 18 C 0.138 3.862 19 O -0.500 6.500 20 C -0.191 4.191 21 C 0.097 3.903 22 F -0.147 7.147 23 C -0.160 4.160 24 C 0.083 3.917 25 H 0.260 0.740 26 H 0.057 0.943 27 H 0.014 0.986 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.416 0.584 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.016 0.984 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -17.909 -4.980 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.017 0.983 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.064 4.064 14 N -0.254 5.254 15 C -0.037 4.037 16 C -0.075 4.075 17 C -0.162 4.162 18 C 0.093 3.907 19 O -0.314 6.314 20 C -0.211 4.211 21 C 0.078 3.922 22 F -0.126 7.126 23 C -0.180 4.180 24 C -0.044 4.044 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.171 0.829 35 H 0.277 0.723 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.034 0.966 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.047 -17.244 -4.712 18.872 hybrid contribution 1.484 1.219 -0.545 1.997 sum 7.531 -16.025 -5.257 18.470 Atomic orbital electron populations 1.70018 1.07042 1.27081 1.51161 1.25668 0.95639 1.02113 0.94822 0.85756 0.78541 0.79517 0.78719 1.20668 1.19546 1.20108 1.21480 0.92797 0.92384 1.50852 0.93481 1.18596 0.93043 0.91377 0.93717 0.98279 1.21454 0.99033 0.96605 0.97146 1.21601 0.97675 0.94774 1.00985 1.22107 0.94799 0.99307 0.90219 1.62364 1.22883 1.01966 1.38200 1.21499 0.91239 0.95387 0.95538 1.20550 0.94436 0.94988 0.97483 1.21601 1.00922 1.01901 0.91805 1.18084 0.91531 0.95435 0.85659 1.84797 1.83186 1.31633 1.31741 1.21494 0.99686 1.02654 0.97225 1.17643 0.82947 0.96033 0.95613 1.91480 1.46464 1.78591 1.96020 1.21252 0.94412 1.02517 0.99818 1.21971 0.95278 0.88851 0.98340 0.93045 0.92474 0.96691 0.92717 0.91428 0.88490 0.95604 0.89020 0.86815 0.82874 0.72349 0.83101 0.84927 0.96628 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.90 11.35 21.45 0.24 -53.65 16 2 C 0.02 0.94 5.30 84.66 0.45 1.39 16 3 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.54 -30.50 8.56 25.60 0.22 -30.28 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 9 C 0.05 2.65 2.26 -11.49 -0.03 2.63 16 10 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 11 C -0.10 -5.10 5.02 30.67 0.15 -4.95 16 12 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 13 C 0.06 2.00 4.84 86.33 0.42 2.42 16 14 N -0.53 -17.85 4.86 -900.91 -4.38 -22.23 16 15 C 0.09 2.23 5.55 85.56 0.48 2.70 16 16 C -0.07 -1.82 4.03 -19.89 -0.08 -1.90 16 17 C -0.14 -3.16 8.07 22.37 0.18 -2.98 16 18 C 0.14 3.03 6.70 22.50 0.15 3.19 16 19 O -0.50 -8.81 13.50 -92.39 -1.25 -10.06 16 20 C -0.19 -4.61 9.97 22.41 0.22 -4.39 16 21 C 0.10 2.72 7.30 22.36 0.16 2.89 16 22 F -0.15 -4.41 17.27 44.97 0.78 -3.63 16 23 C -0.16 -4.51 7.99 22.33 0.18 -4.33 16 24 C 0.08 3.49 3.76 86.33 0.32 3.81 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 27 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.10 2.38 8.06 -2.39 -0.02 2.36 16 31 H 0.03 0.85 6.56 -2.39 -0.02 0.84 16 32 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 33 H 0.11 2.11 8.00 -2.39 -0.02 2.09 16 34 H 0.15 2.73 8.04 -2.91 -0.02 2.70 16 35 H 0.42 2.58 9.06 -74.06 -0.67 1.91 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.13 3.77 8.02 -2.91 -0.02 3.75 16 38 H 0.02 0.68 6.46 -2.39 -0.02 0.67 16 39 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 Total: -1.00 -67.00 316.54 0.82 -66.17 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.39 Total: 10.46 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 3.02 Total: -33.90 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -4.13 Total: -75.88 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.25 Total: -10.06 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.00 0.82 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237276550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.182 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds