Wall clock time and date at job start Wed Apr 15 2020 11:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99921 * 2 1 4 4 H 1.48495 * 109.46879 * 269.99435 * 3 2 1 5 5 H 1.48495 * 109.46987 * 29.99715 * 3 2 1 6 6 H 1.48501 * 109.46784 * 149.99852 * 3 2 1 7 7 C 1.37871 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00532 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50264 * 60.07638 * 9 7 2 11 11 C 1.53120 * 109.50038 * 300.00172 * 9 7 2 12 12 C 1.53124 * 109.15671 * 182.36190 * 11 9 7 13 13 C 1.53034 * 109.28178 * 57.65535 * 12 11 9 14 14 N 1.46850 * 109.52009 * 300.81886 * 13 12 11 15 15 C 1.46904 * 110.99823 * 185.83865 * 14 13 12 16 16 C 1.50691 * 109.46997 * 66.04534 * 15 14 13 17 17 C 1.38177 * 119.96304 * 270.22821 * 16 15 14 18 18 C 1.38726 * 119.99613 * 180.25528 * 17 16 15 19 19 O 1.35896 * 120.04337 * 179.77027 * 18 17 16 20 20 C 1.38706 * 119.91459 * 359.49545 * 18 17 16 21 21 C 1.38350 * 119.91916 * 0.25199 * 20 18 17 22 22 F 1.35100 * 119.99382 * 179.97438 * 21 20 18 23 23 C 1.38209 * 119.95895 * 90.00201 * 16 15 14 24 24 C 1.46851 * 111.19793 * 61.74222 * 14 13 12 25 25 H 0.97006 * 120.00404 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.52635 * 62.45708 * 11 9 7 27 27 H 1.08994 * 109.57467 * 302.29349 * 11 9 7 28 28 H 1.09000 * 109.50305 * 297.71112 * 12 11 9 29 29 H 1.09007 * 109.50009 * 177.59262 * 12 11 9 30 30 H 1.08998 * 109.46554 * 180.80072 * 13 12 11 31 31 H 1.09001 * 109.46022 * 60.83103 * 13 12 11 32 32 H 1.08999 * 109.46662 * 306.03958 * 15 14 13 33 33 H 1.09000 * 109.46643 * 186.04638 * 15 14 13 34 34 H 1.08001 * 119.99815 * 0.02562 * 17 16 15 35 35 H 0.96700 * 114.00170 * 269.72595 * 19 18 17 36 36 H 1.08003 * 120.03977 * 180.23167 * 20 18 17 37 37 H 1.07998 * 119.96196 * 359.97438 * 23 16 15 38 38 H 1.08993 * 109.46413 * 58.27425 * 24 14 13 39 39 H 1.09004 * 109.46080 * 178.24312 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5583 -0.8902 11 6 0.3699 -2.5807 1.2502 12 6 -0.3465 -3.9338 1.2724 13 6 0.6929 -5.0566 1.2407 14 7 1.5097 -4.9349 0.0263 15 6 2.4266 -6.0748 -0.1077 16 6 1.6317 -7.3347 -0.3350 17 6 1.2120 -8.0899 0.7434 18 6 0.4848 -9.2527 0.5348 19 8 0.0755 -9.9985 1.5945 20 6 0.1710 -9.6500 -0.7566 21 6 0.5886 -8.8885 -1.8336 22 9 0.2843 -9.2744 -3.0920 23 6 1.3194 -7.7311 -1.6217 24 6 2.2441 -3.6635 0.0056 25 1 -0.4851 0.8401 -0.0004 26 1 -0.3676 -1.7783 1.2290 27 1 0.9899 -2.4822 2.1412 28 1 -0.9971 -4.0155 0.4017 29 1 -0.9424 -4.0152 2.1816 30 1 0.1856 -6.0213 1.2420 31 1 1.3344 -4.9825 2.1188 32 1 3.0158 -6.1762 0.8036 33 1 3.0926 -5.9077 -0.9543 34 1 1.4533 -7.7767 1.7484 35 1 0.7064 -10.6805 1.8625 36 1 -0.3983 -10.5530 -0.9212 37 1 1.6449 -7.1373 -2.4630 38 1 2.8784 -3.5960 0.8894 39 1 2.8635 -3.6164 -0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237276558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:09 Heat of formation + Delta-G solvation = -69.642229 kcal Electronic energy + Delta-G solvation = -21609.231752 eV Core-core repulsion = 18237.821713 eV Total energy + Delta-G solvation = -3371.410039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.97996 -39.98124 -38.26988 -36.74035 -33.92901 -32.15530 -30.64362 -29.88457 -29.64528 -26.11573 -24.94969 -22.85405 -22.49235 -21.63372 -20.90638 -18.62037 -18.35771 -16.83987 -16.69686 -16.38407 -16.26002 -15.70084 -15.14399 -14.76479 -14.63238 -14.15540 -13.95828 -13.68358 -13.24684 -12.79327 -12.52885 -12.47077 -12.10360 -11.86895 -11.80669 -11.51580 -11.25459 -10.95610 -10.91710 -10.67265 -10.62004 -10.11319 -9.84117 -9.47857 -9.15040 -8.87015 -8.73657 -8.69151 -8.30174 -7.72695 -5.97217 -4.03816 0.98054 1.00059 3.29332 3.30928 3.37821 3.40359 3.74033 4.28949 4.40218 4.55637 4.68843 4.88173 4.92716 5.19882 5.32563 5.33352 5.51454 5.65008 5.75587 5.82236 5.90811 5.97467 6.06974 6.11195 6.25560 6.34137 6.42873 6.49553 6.62950 6.71991 6.74797 6.94654 7.21405 7.37219 7.38780 7.61559 7.72833 7.78011 8.07849 8.17668 8.47301 9.00211 9.60620 11.08667 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.003777 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.773561 B = 7411.094106 C = 7766.759362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.058 3.942 14 N -0.532 5.532 15 C 0.088 3.912 16 C -0.020 4.020 17 C -0.149 4.149 18 C 0.131 3.869 19 O -0.494 6.494 20 C -0.189 4.189 21 C 0.114 3.886 22 F -0.138 7.138 23 C -0.140 4.140 24 C 0.068 3.932 25 H 0.260 0.740 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.391 0.609 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.021 0.979 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -18.705 1.238 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.070 4.070 14 N -0.257 5.257 15 C -0.040 4.040 16 C -0.021 4.021 17 C -0.168 4.168 18 C 0.087 3.913 19 O -0.305 6.305 20 C -0.208 4.208 21 C 0.094 3.906 22 F -0.117 7.117 23 C -0.159 4.159 24 C -0.059 4.059 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.039 0.961 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.890 -18.219 0.773 18.333 hybrid contribution 1.250 0.497 0.552 1.454 sum 3.139 -17.722 1.325 18.046 Atomic orbital electron populations 1.69892 1.05850 1.26339 1.50557 1.24929 0.94813 0.98943 0.95108 0.86629 0.79833 0.83645 0.78075 1.20703 1.21280 1.20025 1.21135 0.92804 0.90644 1.50852 0.92840 1.18665 0.92600 0.90177 0.94938 0.94731 1.21659 1.00047 0.94755 0.98412 1.21671 0.97190 0.96377 1.00255 1.22148 0.95734 0.99241 0.89844 1.62045 1.23531 1.01597 1.38501 1.21082 0.93398 0.88169 1.01349 1.19580 0.95909 0.95034 0.91596 1.21415 0.99736 0.95743 0.99888 1.18018 0.95535 0.92034 0.85741 1.84844 1.47512 1.50594 1.47504 1.21277 1.05396 1.02624 0.91515 1.17418 0.99112 0.95095 0.78952 1.91506 1.91417 1.90838 1.37920 1.21085 1.00554 0.95703 0.98580 1.22349 0.96492 0.88124 0.98889 0.93041 0.89083 0.95171 0.92112 0.93518 0.91945 0.95877 0.94027 0.89669 0.84930 0.75253 0.84470 0.84144 0.96113 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.35 55.43 0.63 -24.65 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.98 8.57 -34.44 -0.30 -14.27 16 8 H 0.05 1.42 7.75 -52.48 -0.41 1.02 16 9 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.61 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 13 C 0.06 1.02 5.15 -3.83 -0.02 1.00 16 14 N -0.53 -9.51 4.65 -236.12 -1.10 -10.61 16 15 C 0.09 1.23 5.12 -4.98 -0.03 1.21 16 16 C -0.02 -0.26 4.90 -104.66 -0.51 -0.78 16 17 C -0.15 -1.77 7.81 -39.42 -0.31 -2.08 16 18 C 0.13 1.47 6.70 -39.23 -0.26 1.21 16 19 O -0.49 -4.73 13.50 -19.41 -0.26 -4.99 16 20 C -0.19 -2.13 9.97 -39.37 -0.39 -2.52 16 21 C 0.11 1.42 7.30 -39.44 -0.29 1.13 16 22 F -0.14 -1.78 17.27 2.25 0.04 -1.75 16 23 C -0.14 -1.79 9.68 -39.49 -0.38 -2.17 16 24 C 0.07 1.40 4.68 -3.83 -0.02 1.38 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.01 5.73 -51.93 -0.30 0.71 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.08 1.11 7.92 -51.93 -0.41 0.70 16 34 H 0.13 1.47 7.93 -52.49 -0.42 1.06 16 35 H 0.39 1.66 9.06 45.56 0.41 2.07 16 36 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 1.22 8.01 -51.93 -0.42 0.80 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -29.70 320.07 -8.78 -38.48 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.79 Total: 0.92 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.10 Total: -18.33 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.47 Total: -35.26 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.26 Total: -4.99 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.70 -8.78 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237276558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.159 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds