Wall clock time and date at job start Wed Apr 15 2020 11:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99921 * 2 1 4 4 H 1.48495 * 109.46879 * 269.99435 * 3 2 1 5 5 H 1.48495 * 109.46987 * 29.99715 * 3 2 1 6 6 H 1.48501 * 109.46784 * 149.99852 * 3 2 1 7 7 C 1.37871 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00532 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50264 * 60.07638 * 9 7 2 11 11 C 1.53120 * 109.50038 * 300.00172 * 9 7 2 12 12 C 1.53124 * 109.15671 * 182.36190 * 11 9 7 13 13 C 1.53034 * 109.28178 * 57.65535 * 12 11 9 14 14 N 1.46850 * 109.52009 * 300.81886 * 13 12 11 15 15 C 1.46904 * 110.99823 * 185.83865 * 14 13 12 16 16 C 1.50691 * 109.46997 * 66.04534 * 15 14 13 17 17 C 1.38177 * 119.96304 * 270.22821 * 16 15 14 18 18 C 1.38726 * 119.99613 * 180.25528 * 17 16 15 19 19 O 1.35896 * 120.04337 * 179.77027 * 18 17 16 20 20 C 1.38706 * 119.91459 * 359.49545 * 18 17 16 21 21 C 1.38350 * 119.91916 * 0.25199 * 20 18 17 22 22 F 1.35100 * 119.99382 * 179.97438 * 21 20 18 23 23 C 1.38209 * 119.95895 * 90.00201 * 16 15 14 24 24 C 1.46851 * 111.19793 * 61.74222 * 14 13 12 25 25 H 0.97006 * 120.00404 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.52635 * 62.45708 * 11 9 7 27 27 H 1.08994 * 109.57467 * 302.29349 * 11 9 7 28 28 H 1.09000 * 109.50305 * 297.71112 * 12 11 9 29 29 H 1.09007 * 109.50009 * 177.59262 * 12 11 9 30 30 H 1.08998 * 109.46554 * 180.80072 * 13 12 11 31 31 H 1.09001 * 109.46022 * 60.83103 * 13 12 11 32 32 H 1.08999 * 109.46662 * 306.03958 * 15 14 13 33 33 H 1.09000 * 109.46643 * 186.04638 * 15 14 13 34 34 H 1.08001 * 119.99815 * 0.02562 * 17 16 15 35 35 H 0.96700 * 114.00170 * 269.72595 * 19 18 17 36 36 H 1.08003 * 120.03977 * 180.23167 * 20 18 17 37 37 H 1.07998 * 119.96196 * 359.97438 * 23 16 15 38 38 H 1.08993 * 109.46413 * 58.27425 * 24 14 13 39 39 H 1.09004 * 109.46080 * 178.24312 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5583 -0.8902 11 6 0.3699 -2.5807 1.2502 12 6 -0.3465 -3.9338 1.2724 13 6 0.6929 -5.0566 1.2407 14 7 1.5097 -4.9349 0.0263 15 6 2.4266 -6.0748 -0.1077 16 6 1.6317 -7.3347 -0.3350 17 6 1.2120 -8.0899 0.7434 18 6 0.4848 -9.2527 0.5348 19 8 0.0755 -9.9985 1.5945 20 6 0.1710 -9.6500 -0.7566 21 6 0.5886 -8.8885 -1.8336 22 9 0.2843 -9.2744 -3.0920 23 6 1.3194 -7.7311 -1.6217 24 6 2.2441 -3.6635 0.0056 25 1 -0.4851 0.8401 -0.0004 26 1 -0.3676 -1.7783 1.2290 27 1 0.9899 -2.4822 2.1412 28 1 -0.9971 -4.0155 0.4017 29 1 -0.9424 -4.0152 2.1816 30 1 0.1856 -6.0213 1.2420 31 1 1.3344 -4.9825 2.1188 32 1 3.0158 -6.1762 0.8036 33 1 3.0926 -5.9077 -0.9543 34 1 1.4533 -7.7767 1.7484 35 1 0.7064 -10.6805 1.8625 36 1 -0.3983 -10.5530 -0.9212 37 1 1.6449 -7.1373 -2.4630 38 1 2.8784 -3.5960 0.8894 39 1 2.8635 -3.6164 -0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237276558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:09 Heat of formation + Delta-G solvation = -88.635666 kcal Electronic energy + Delta-G solvation = -21610.055370 eV Core-core repulsion = 18237.821713 eV Total energy + Delta-G solvation = -3372.233656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.94354 -40.93931 -39.63274 -37.70830 -35.59646 -33.80158 -31.98379 -31.38082 -30.71561 -27.32751 -26.90398 -23.95981 -23.75895 -23.15998 -22.15323 -20.35047 -19.24123 -18.39801 -17.75727 -17.54143 -17.20975 -16.81103 -16.62785 -16.32108 -15.77856 -15.48399 -15.21056 -14.94273 -14.65188 -14.41650 -14.19346 -13.76034 -13.41175 -13.27001 -12.92033 -12.84481 -12.62510 -12.54505 -12.48365 -12.34559 -11.82384 -11.73441 -11.67916 -11.36939 -10.87618 -10.64987 -10.36998 -9.86376 -9.63115 -9.12398 -8.06397 -6.20806 0.07362 0.09687 1.42720 1.43257 1.53229 2.36367 2.45579 2.90560 3.20856 3.25254 3.41879 3.67415 3.97880 4.06145 4.19252 4.22124 4.27820 4.38856 4.40889 4.61077 4.64506 4.74342 4.77020 4.90334 4.98000 4.99163 5.06109 5.10993 5.19093 5.23059 5.37915 5.45525 5.53913 5.64994 5.76020 5.96869 6.12960 6.22025 6.32010 6.46393 6.81902 6.92541 7.47420 8.98203 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.003777 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.773561 B = 7411.094106 C = 7766.759362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.052 3.948 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.065 3.935 14 N -0.545 5.545 15 C 0.090 3.910 16 C -0.029 4.029 17 C -0.150 4.150 18 C 0.140 3.860 19 O -0.501 6.501 20 C -0.186 4.186 21 C 0.102 3.898 22 F -0.144 7.144 23 C -0.151 4.151 24 C 0.082 3.918 25 H 0.259 0.741 26 H 0.056 0.944 27 H 0.025 0.975 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.416 0.584 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.022 0.978 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -20.278 2.224 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.270 5.270 15 C -0.036 4.036 16 C -0.029 4.029 17 C -0.169 4.169 18 C 0.095 3.905 19 O -0.314 6.314 20 C -0.205 4.205 21 C 0.083 3.917 22 F -0.123 7.123 23 C -0.170 4.170 24 C -0.045 4.045 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.162 0.838 35 H 0.276 0.724 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.040 0.960 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.730 -19.828 1.765 20.092 hybrid contribution 0.958 0.900 0.255 1.339 sum 3.688 -18.928 2.020 19.389 Atomic orbital electron populations 1.70047 1.07263 1.27010 1.51316 1.25725 0.95608 1.02366 0.94827 0.85618 0.78772 0.79456 0.78170 1.20250 1.21065 1.19116 1.21534 0.93085 0.92063 1.50650 0.92754 1.18594 0.93047 0.91467 0.93622 0.98762 1.21458 0.99126 0.96008 0.97549 1.21588 0.97634 0.95162 1.00581 1.22079 0.95206 0.98878 0.90064 1.61921 1.24432 1.01677 1.38943 1.21105 0.93073 0.87038 1.02430 1.19443 0.96650 0.94891 0.91949 1.21541 0.99540 0.95818 1.00005 1.17993 0.94555 0.91912 0.86043 1.84790 1.48618 1.51293 1.46748 1.21479 1.04917 1.02879 0.91257 1.17538 0.99660 0.95408 0.79109 1.91489 1.91527 1.90892 1.38394 1.21144 1.01008 0.96089 0.98750 1.21997 0.95264 0.88215 0.99006 0.93152 0.92578 0.95611 0.93664 0.91459 0.89922 0.94932 0.92456 0.88986 0.83843 0.72373 0.82816 0.84327 0.95991 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.71 11.35 21.44 0.24 -53.47 16 2 C 0.01 0.74 5.30 84.65 0.45 1.19 16 3 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -29.50 8.57 25.60 0.22 -29.28 16 8 H 0.05 2.91 7.75 -2.91 -0.02 2.89 16 9 C 0.05 2.62 2.26 -11.49 -0.03 2.59 16 10 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 11 C -0.10 -4.97 5.02 30.68 0.15 -4.82 16 12 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 13 C 0.07 2.16 5.15 86.32 0.44 2.61 16 14 N -0.55 -18.85 4.65 -900.94 -4.19 -23.04 16 15 C 0.09 2.36 5.12 85.55 0.44 2.80 16 16 C -0.03 -0.68 4.90 -19.89 -0.10 -0.78 16 17 C -0.15 -3.13 7.81 22.37 0.17 -2.95 16 18 C 0.14 2.71 6.70 22.50 0.15 2.86 16 19 O -0.50 -7.79 13.50 -92.38 -1.25 -9.04 16 20 C -0.19 -3.75 9.97 22.41 0.22 -3.52 16 21 C 0.10 2.40 7.30 22.36 0.16 2.57 16 22 F -0.14 -3.60 17.27 44.97 0.78 -2.82 16 23 C -0.15 -3.68 9.68 22.33 0.22 -3.46 16 24 C 0.08 3.37 4.68 86.32 0.40 3.77 16 25 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 26 H 0.06 3.08 6.15 -2.38 -0.01 3.07 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.08 2.44 5.73 -2.39 -0.01 2.43 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 33 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 34 H 0.14 2.67 7.93 -2.91 -0.02 2.64 16 35 H 0.42 1.96 9.06 -74.06 -0.67 1.29 16 36 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.06 2.49 8.01 -2.38 -0.02 2.47 16 Total: -1.00 -64.52 320.07 1.10 -63.42 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.38 Total: 9.88 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.10 Total: -30.63 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -3.94 Total: -76.50 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.25 Total: -9.04 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -64.52 1.10 -63.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237276558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.213 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds