Wall clock time and date at job start Wed Apr 15 2020 11:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86804 * 119.99713 * 2 1 4 4 H 1.48502 * 109.46771 * 240.00350 * 3 2 1 5 5 H 1.48503 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47062 * 120.00275 * 3 2 1 7 7 C 1.40071 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00142 * 165.58361 * 7 2 1 9 9 C 1.40884 * 120.00056 * 345.58277 * 7 2 1 10 10 C 1.41127 * 120.71550 * 332.86999 * 9 7 2 11 11 C 1.36888 * 118.39256 * 180.27530 * 10 9 7 12 12 C 1.38873 * 119.79804 * 359.51715 * 11 10 9 13 13 N 1.31734 * 121.50353 * 0.49111 * 12 11 10 14 14 C 1.32580 * 121.72330 * 359.74893 * 13 12 11 15 15 C 1.47825 * 119.99116 * 179.97438 * 14 13 12 16 16 C 1.39673 * 120.14972 * 136.09858 * 15 14 13 17 17 C 1.37923 * 119.84245 * 179.71776 * 16 15 14 18 18 C 1.38405 * 120.15032 * 0.53534 * 17 16 15 19 19 C 1.50697 * 119.84254 * 179.74122 * 18 17 16 20 20 C 1.53787 * 113.61794 * 37.51676 * 19 18 17 21 21 C 1.53782 * 87.07877 * 220.01857 * 20 19 18 22 22 C 1.53774 * 87.08371 * 25.43366 * 21 20 19 23 23 C 1.38392 * 120.30498 * 359.76203 * 18 17 16 24 24 C 1.37916 * 120.15579 * 359.95412 * 23 18 17 25 25 H 0.97007 * 120.00671 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.80653 * 359.97438 * 10 9 7 27 27 H 1.07998 * 120.10217 * 179.72508 * 11 10 9 28 28 H 1.08003 * 119.24789 * 180.24094 * 12 11 10 29 29 H 1.07993 * 120.07810 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.92115 * 180.27157 * 17 16 15 31 31 H 1.08997 * 112.84873 * 168.82659 * 19 18 17 32 32 H 1.08998 * 113.61056 * 334.56491 * 20 19 18 33 33 H 1.08999 * 113.61190 * 105.46942 * 20 19 18 34 34 H 1.08997 * 113.61158 * 270.88039 * 21 20 19 35 35 H 1.09007 * 113.61051 * 139.98615 * 21 20 19 36 36 H 1.09005 * 113.61501 * 220.01787 * 22 21 20 37 37 H 1.08996 * 113.69243 * 89.12768 * 22 21 20 38 38 H 1.08005 * 119.92060 * 179.97438 * 23 18 17 39 39 H 1.08009 * 120.07806 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0953 1.6965 -1.2126 5 1 1.2765 2.7465 0.0006 6 1 3.0954 1.6965 1.2124 7 6 2.0081 -1.2130 -0.0005 8 1 3.0626 -1.2276 -0.2334 9 6 1.3370 -2.4141 0.3027 10 6 0.1925 -2.4117 1.1284 11 6 -0.4190 -3.6066 1.3968 12 6 0.0868 -4.7788 0.8502 13 7 1.1555 -4.7741 0.0800 14 6 1.7972 -3.6521 -0.2150 15 6 2.9933 -3.6912 -1.0829 16 6 3.1547 -2.7454 -2.0979 17 6 4.2760 -2.7843 -2.9002 18 6 5.2344 -3.7642 -2.7084 19 6 6.4539 -3.8037 -3.5927 20 6 6.9938 -2.4114 -3.9603 21 6 7.2452 -2.9680 -5.3716 22 6 6.1275 -3.9844 -5.0846 23 6 5.0777 -4.7081 -1.7085 24 6 3.9643 -4.6775 -0.8952 25 1 -0.4851 0.8401 0.0004 26 1 -0.1888 -1.4900 1.5426 27 1 -1.2940 -3.6373 2.0290 28 1 -0.4050 -5.7162 1.0646 29 1 2.4055 -1.9831 -2.2515 30 1 4.4042 -2.0510 -3.6826 31 1 7.2197 -4.4879 -3.2274 32 1 6.2372 -1.6274 -3.9285 33 1 7.9062 -2.1424 -3.4280 34 1 8.2283 -3.4227 -5.4929 35 1 7.0019 -2.2647 -6.1681 36 1 6.3405 -4.9853 -5.4601 37 1 5.1336 -3.6317 -5.3599 38 1 5.8293 -5.4702 -1.5645 39 1 3.8435 -5.4145 -0.1149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244942346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:25 Heat of formation + Delta-G solvation = 55.676136 kcal Electronic energy + Delta-G solvation = -20697.567475 eV Core-core repulsion = 17762.360873 eV Total energy + Delta-G solvation = -2935.206602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62016 -38.52078 -36.94065 -34.20252 -31.82085 -30.74497 -30.08143 -28.90921 -25.95271 -25.51339 -24.84517 -22.36062 -21.79476 -21.27545 -20.11687 -18.85435 -17.45757 -16.49169 -15.83741 -15.39399 -15.13077 -14.57576 -14.14449 -13.90324 -13.66800 -13.17970 -12.82362 -12.75455 -12.51773 -12.31253 -12.27972 -11.89900 -11.55766 -11.44276 -11.38000 -11.13518 -11.04767 -10.65684 -10.62625 -10.29856 -10.23324 -9.97956 -9.74991 -9.44846 -8.50128 -8.19791 -8.07915 -7.98111 -7.29905 -6.91779 -4.54628 1.83300 2.19066 2.63061 2.95154 2.96718 3.00001 3.15167 3.78164 4.42065 4.53994 4.73390 4.81083 4.82106 5.17622 5.44257 5.47014 5.53594 5.63541 5.70348 5.75084 5.82647 5.88036 5.92514 6.02131 6.18338 6.21357 6.24966 6.31578 6.42095 6.58339 6.65694 6.73696 6.80991 6.86162 6.99986 7.02567 7.26859 7.29497 7.51578 7.65124 7.73394 7.85266 7.88959 8.34893 8.56507 8.64257 9.55679 9.95633 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.005908 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.384297 B = 4738.528874 C = 6282.006105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.439 4.439 8 H 0.089 0.911 9 C 0.086 3.914 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.034 4.034 13 N -0.453 5.453 14 C 0.012 3.988 15 C 0.021 3.979 16 C -0.092 4.092 17 C -0.125 4.125 18 C -0.096 4.096 19 C -0.066 4.066 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.109 4.109 25 H 0.285 0.715 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 -1.207 -5.565 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.107 0.893 9 C 0.081 3.919 10 C -0.156 4.156 11 C -0.170 4.170 12 C -0.195 4.195 13 N -0.160 5.160 14 C -0.126 4.126 15 C 0.021 3.979 16 C -0.111 4.111 17 C -0.143 4.143 18 C -0.097 4.097 19 C -0.084 4.084 20 C -0.173 4.173 21 C -0.182 4.182 22 C -0.169 4.169 23 C -0.143 4.143 24 C -0.128 4.128 25 H 0.097 0.903 26 H 0.144 0.856 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.801 -1.818 -5.908 10.755 hybrid contribution -0.230 1.558 0.516 1.658 sum 8.571 -0.259 -5.392 10.129 Atomic orbital electron populations 1.69747 1.07712 1.29934 1.33695 1.26006 0.94790 1.01568 0.92135 0.86316 0.80190 0.79721 0.80457 1.18495 1.20143 1.18585 1.19602 0.97385 0.90250 1.39599 0.89269 1.18331 0.91662 0.92610 0.89277 1.21397 0.98172 0.96911 0.99132 1.21435 0.99913 0.94549 1.01119 1.21655 0.97488 0.96490 1.03833 1.67027 1.06993 1.30455 1.11565 1.19548 0.99283 0.89429 1.04386 1.18440 0.92442 0.93711 0.93347 1.21438 0.97417 0.98541 0.93692 1.20766 0.94648 0.98689 1.00189 1.19536 0.96093 0.96703 0.97322 1.21409 0.95386 0.97712 0.93914 1.23052 1.01161 0.96974 0.96123 1.22838 0.98889 0.99006 0.97450 1.22986 0.99152 0.99190 0.95584 1.20759 0.98069 0.99000 0.96496 1.21209 0.93517 0.98541 0.99510 0.90345 0.85634 0.88338 0.86194 0.84971 0.87000 0.89243 0.89551 0.91737 0.90540 0.91698 0.91800 0.89826 0.87289 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.03 10.97 55.55 0.61 -18.42 16 2 C 0.07 1.75 5.21 -17.32 -0.09 1.66 16 3 Si 0.91 17.69 29.58 -169.99 -5.03 12.66 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.44 -10.90 6.78 -37.89 -0.26 -11.16 16 8 H 0.09 2.18 6.42 -52.49 -0.34 1.84 16 9 C 0.09 2.22 5.55 -106.42 -0.59 1.62 16 10 C -0.13 -3.27 8.73 -38.98 -0.34 -3.61 16 11 C -0.15 -3.44 10.03 -39.84 -0.40 -3.84 16 12 C -0.03 -0.78 11.16 -17.36 -0.19 -0.97 16 13 N -0.45 -11.27 10.15 -9.17 -0.09 -11.36 16 14 C 0.01 0.29 6.43 -82.24 -0.53 -0.24 16 15 C 0.02 0.48 5.25 -104.90 -0.55 -0.07 16 16 C -0.09 -1.92 7.82 -39.16 -0.31 -2.23 16 17 C -0.12 -2.20 8.58 -39.64 -0.34 -2.54 16 18 C -0.10 -1.57 5.30 -104.51 -0.55 -2.12 16 19 C -0.07 -0.85 3.98 -90.96 -0.36 -1.21 16 20 C -0.14 -1.59 7.45 -25.91 -0.19 -1.78 16 21 C -0.14 -1.46 8.08 -25.92 -0.21 -1.67 16 22 C -0.13 -1.52 7.55 -25.92 -0.20 -1.72 16 23 C -0.13 -2.15 9.69 -39.64 -0.38 -2.54 16 24 C -0.11 -2.19 9.66 -39.16 -0.38 -2.57 16 25 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 26 H 0.13 3.17 6.34 -52.49 -0.33 2.84 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 28 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 29 H 0.13 2.93 6.77 -52.49 -0.36 2.57 16 30 H 0.11 1.73 6.64 -52.49 -0.35 1.38 16 31 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 32 H 0.09 1.07 6.30 -51.93 -0.33 0.74 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.03 7.72 -51.93 -0.40 0.63 16 38 H 0.11 1.59 8.05 -52.48 -0.42 1.16 16 39 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -26.69 320.63 -10.59 -37.28 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.04 Total: 10.00 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: -5.87 Total: -34.99 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.52 Total: -29.78 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.69 -10.59 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244942346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.961 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds