Wall clock time and date at job start Wed Apr 15 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46951 * 239.99342 * 3 2 1 5 5 H 1.48497 * 109.47512 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46678 * 120.00205 * 3 2 1 7 7 C 1.38807 * 119.99507 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47500 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46949 * 304.99889 * 11 10 9 13 13 O 1.42897 * 109.47203 * 64.99533 * 11 10 9 14 14 C 1.53002 * 109.47172 * 184.99817 * 11 10 9 15 15 N 1.46504 * 109.46853 * 179.97438 * 14 11 10 16 16 C 1.34774 * 119.99752 * 179.97438 * 15 14 11 17 17 O 1.21282 * 120.00557 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99826 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47336 * 180.02562 * 18 16 15 20 20 C 1.38675 * 120.41529 * 89.99890 * 19 18 16 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 0.97003 * 119.99511 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00360 * 359.97438 * 9 7 2 27 27 H 1.09007 * 109.47393 * 59.99480 * 10 9 7 28 28 H 1.09004 * 109.47172 * 300.00206 * 10 9 7 29 29 H 0.96700 * 113.99617 * 60.00229 * 13 11 10 30 30 H 1.09003 * 109.47223 * 60.00035 * 14 11 10 31 31 H 1.08993 * 109.47000 * 299.99556 * 14 11 10 32 32 H 0.96993 * 120.00109 * 0.02562 * 15 14 11 33 33 H 1.09008 * 109.47420 * 60.00074 * 18 16 15 34 34 H 1.08998 * 109.47517 * 300.00013 * 18 16 15 35 35 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 36 36 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 38 38 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0578 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0008 12 1 0.3785 -4.7126 0.8418 13 8 0.3226 -4.8120 -1.2210 14 6 1.8242 -6.1412 0.1276 15 7 0.8721 -7.2546 0.1274 16 6 1.3179 -8.5224 0.2295 17 8 2.5071 -8.7416 0.3220 18 6 0.3385 -9.6678 0.2286 19 6 1.0877 -10.9694 0.3537 20 6 1.3561 -11.5078 1.6032 21 6 2.0476 -12.7074 1.6700 22 6 2.4483 -13.3200 0.4976 23 7 2.1715 -12.7813 -0.6737 24 6 1.5154 -11.6418 -0.7752 25 1 -0.4849 0.8401 -0.0004 26 1 0.3554 -2.3880 0.0005 27 1 2.6839 -3.7142 0.8922 28 1 2.6852 -3.7150 -0.8878 29 1 0.8696 -4.9036 -2.0132 30 1 2.3894 -6.1471 1.0597 31 1 2.5092 -6.2482 -0.7134 32 1 -0.0790 -7.0794 0.0530 33 1 -0.2270 -9.6617 -0.7033 34 1 -0.3463 -9.5609 1.0698 35 1 1.0343 -11.0043 2.5028 36 1 2.2742 -13.1553 2.6263 37 1 2.9911 -14.2527 0.5411 38 1 1.3103 -11.2292 -1.7519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482723144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:39 Heat of formation + Delta-G solvation = -45.528619 kcal Electronic energy + Delta-G solvation = -20439.632548 eV Core-core repulsion = 17089.188115 eV Total energy + Delta-G solvation = -3350.444433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66659 -39.53173 -37.66783 -34.44389 -34.03222 -33.84562 -32.19204 -31.35499 -29.57735 -27.97425 -25.29232 -23.84290 -23.06147 -22.25505 -21.47902 -20.36662 -17.60349 -17.30148 -17.12626 -16.77540 -16.59037 -15.98375 -15.55167 -15.01274 -14.81883 -14.49077 -14.19021 -13.74247 -13.65409 -13.41102 -13.31775 -13.07554 -12.94898 -12.46536 -12.27378 -11.90213 -11.81180 -10.99338 -10.82457 -10.67455 -10.26115 -10.22702 -10.01186 -9.84272 -9.72706 -9.56558 -9.21339 -9.17430 -8.92882 -6.97430 -5.79018 -3.08936 0.81793 1.02886 2.48734 3.01946 3.42432 3.46693 3.47890 3.61026 4.12066 4.36615 4.48286 4.51510 4.63200 4.68080 4.71709 4.74264 4.87481 5.02477 5.09140 5.19528 5.35976 5.48390 5.52659 5.58109 5.75594 5.81730 5.90592 5.94524 6.15375 6.32279 6.41818 6.47221 6.62935 7.37795 7.65271 7.71261 7.87747 8.09395 8.39124 9.50692 10.06702 10.42413 11.43240 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.056717 B = 0.002414 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.563410 B =11598.593751 C =11718.952153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.089 3.911 15 N -0.721 5.721 16 C 0.511 3.489 17 O -0.537 6.537 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.094 3.906 23 N -0.485 5.485 24 C 0.113 3.887 25 H 0.256 0.744 26 H 0.388 0.612 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.373 0.627 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -24.939 1.970 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.035 4.035 15 N -0.373 5.373 16 C 0.297 3.703 17 O -0.414 6.414 18 C -0.140 4.140 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.192 4.192 22 C -0.062 4.062 23 N -0.193 5.193 24 C -0.044 4.044 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.220 0.780 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.241 0.759 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.063 -25.315 1.685 25.371 hybrid contribution 0.015 1.500 0.488 1.577 sum -0.048 -23.815 2.173 23.914 Atomic orbital electron populations 1.69669 1.05113 1.25836 1.57229 1.24767 0.95553 0.97761 1.02770 0.86243 0.78506 0.83390 0.77874 1.21224 1.21628 1.21222 1.19171 0.90975 0.84100 1.43362 0.91256 1.42228 1.06053 0.99395 1.89395 1.21202 0.93515 0.86595 0.98871 1.22398 0.94598 0.91828 0.88240 0.87719 1.86573 1.37542 1.96239 1.15417 1.22104 0.92260 0.85964 1.03175 1.45921 1.11294 1.05496 1.74568 1.20467 0.89572 0.83763 0.76531 1.90743 1.17028 1.84671 1.48975 1.20609 0.97509 0.90067 1.05822 1.20305 1.00480 0.96345 0.94644 1.21457 0.95305 0.94691 0.97357 1.22114 1.00137 0.96695 1.00221 1.22765 0.96471 0.99294 0.87707 1.67689 1.12043 1.11245 1.28347 1.22608 0.92945 0.90585 0.98259 0.93399 0.77729 0.95397 0.95913 0.77954 0.90479 0.91067 0.75886 0.87361 0.87581 0.84950 0.84756 0.82841 0.82984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.18 5.55 -59.91 -0.33 -18.51 16 10 C 0.13 2.41 5.90 -4.04 -0.02 2.39 16 11 C 0.09 1.31 3.09 -26.73 -0.08 1.22 16 12 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 13 O -0.55 -8.26 13.03 -35.23 -0.46 -8.72 16 14 C 0.09 1.11 5.34 -4.04 -0.02 1.09 16 15 N -0.72 -7.49 5.45 -60.29 -0.33 -7.82 16 16 C 0.51 5.71 7.82 -10.99 -0.09 5.63 16 17 O -0.54 -8.39 16.03 5.56 0.09 -8.30 16 18 C -0.10 -0.73 5.86 -29.03 -0.17 -0.90 16 19 C -0.12 -1.08 4.39 -104.48 -0.46 -1.54 16 20 C -0.06 -0.54 9.86 -39.28 -0.39 -0.93 16 21 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 22 C 0.09 0.86 11.18 -17.55 -0.20 0.66 16 23 N -0.49 -5.48 10.36 -13.25 -0.14 -5.62 16 24 C 0.11 1.17 10.86 -17.55 -0.19 0.98 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.39 10.38 7.67 -40.82 -0.31 10.07 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.37 4.63 9.04 45.56 0.41 5.04 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.41 3.48 8.35 -40.82 -0.34 3.14 16 33 H 0.11 0.56 8.10 -51.92 -0.42 0.14 16 34 H 0.11 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -35.65 334.58 -7.12 -42.77 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.43 Total: 11.90 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.26 Total: -0.62 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.07 Total: -59.40 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.37 Total: -17.02 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.65 -7.12 -42.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482723144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds