Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48498 * 109.46951 * 239.99342 * 3 2 1 5 5 H 1.48497 * 109.47512 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46678 * 120.00205 * 3 2 1 7 7 C 1.38807 * 119.99507 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47500 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46949 * 304.99889 * 11 10 9 13 13 O 1.42897 * 109.47203 * 64.99533 * 11 10 9 14 14 C 1.53002 * 109.47172 * 184.99817 * 11 10 9 15 15 N 1.46504 * 109.46853 * 179.97438 * 14 11 10 16 16 C 1.34774 * 119.99752 * 179.97438 * 15 14 11 17 17 O 1.21282 * 120.00557 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99826 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47336 * 180.02562 * 18 16 15 20 20 C 1.38675 * 120.41529 * 89.99890 * 19 18 16 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 0.97003 * 119.99511 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00360 * 359.97438 * 9 7 2 27 27 H 1.09007 * 109.47393 * 59.99480 * 10 9 7 28 28 H 1.09004 * 109.47172 * 300.00206 * 10 9 7 29 29 H 0.96700 * 113.99617 * 60.00229 * 13 11 10 30 30 H 1.09003 * 109.47223 * 60.00035 * 14 11 10 31 31 H 1.08993 * 109.47000 * 299.99556 * 14 11 10 32 32 H 0.96993 * 120.00109 * 0.02562 * 15 14 11 33 33 H 1.09008 * 109.47420 * 60.00074 * 18 16 15 34 34 H 1.08998 * 109.47517 * 300.00013 * 18 16 15 35 35 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 36 36 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 38 38 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0578 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0008 12 1 0.3785 -4.7126 0.8418 13 8 0.3226 -4.8120 -1.2210 14 6 1.8242 -6.1412 0.1276 15 7 0.8721 -7.2546 0.1274 16 6 1.3179 -8.5224 0.2295 17 8 2.5071 -8.7416 0.3220 18 6 0.3385 -9.6678 0.2286 19 6 1.0877 -10.9694 0.3537 20 6 1.3561 -11.5078 1.6032 21 6 2.0476 -12.7074 1.6700 22 6 2.4483 -13.3200 0.4976 23 7 2.1715 -12.7813 -0.6737 24 6 1.5154 -11.6418 -0.7752 25 1 -0.4849 0.8401 -0.0004 26 1 0.3554 -2.3880 0.0005 27 1 2.6839 -3.7142 0.8922 28 1 2.6852 -3.7150 -0.8878 29 1 0.8696 -4.9036 -2.0132 30 1 2.3894 -6.1471 1.0597 31 1 2.5092 -6.2482 -0.7134 32 1 -0.0790 -7.0794 0.0530 33 1 -0.2270 -9.6617 -0.7033 34 1 -0.3463 -9.5609 1.0698 35 1 1.0343 -11.0043 2.5028 36 1 2.2742 -13.1553 2.6263 37 1 2.9911 -14.2527 0.5411 38 1 1.3103 -11.2292 -1.7519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482723144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = -74.783008 kcal Electronic energy + Delta-G solvation = -20440.901114 eV Core-core repulsion = 17089.188115 eV Total energy + Delta-G solvation = -3351.712998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.39451 -40.40679 -38.90532 -36.09130 -35.25631 -34.53764 -33.21065 -32.82081 -30.85254 -28.93683 -26.83109 -24.54967 -24.49265 -23.25268 -22.75343 -21.28534 -19.25932 -18.39877 -17.93320 -17.69857 -17.48374 -17.09119 -16.59065 -16.38526 -15.88182 -15.67300 -15.47655 -14.95723 -14.83052 -14.33497 -14.26723 -14.16803 -13.93940 -13.86356 -13.39234 -12.99041 -12.94134 -12.72271 -12.44021 -12.20965 -11.98094 -11.81279 -11.22567 -10.99083 -10.91228 -10.66144 -10.40166 -10.11988 -9.89460 -9.02181 -7.95702 -5.25290 0.16315 0.37572 1.47430 1.50335 1.56603 1.63918 2.15573 2.55921 2.92097 3.35538 3.49160 3.51608 3.60521 3.73773 3.93672 3.96722 4.05637 4.10364 4.13460 4.21986 4.41920 4.50331 4.58804 4.62367 4.72808 4.79809 4.89921 4.92974 5.19837 5.21221 5.31779 5.38553 5.47265 5.80377 6.25542 6.55591 6.79646 7.04231 7.25428 7.32682 8.07749 8.31001 9.27190 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.056717 B = 0.002414 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.563410 B =11598.593751 C =11718.952153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.121 3.879 11 C 0.110 3.890 12 H 0.102 0.898 13 O -0.562 6.562 14 C 0.102 3.898 15 N -0.711 5.711 16 C 0.512 3.488 17 O -0.585 6.585 18 C -0.090 4.090 19 C -0.125 4.125 20 C -0.074 4.074 21 C -0.172 4.172 22 C 0.079 3.921 23 N -0.517 5.517 24 C 0.091 3.909 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.032 0.968 28 H 0.029 0.971 29 H 0.385 0.615 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.418 0.582 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.175 0.825 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -25.700 2.498 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.383 5.383 10 C -0.006 4.006 11 C 0.050 3.950 12 H 0.120 0.880 13 O -0.368 6.368 14 C -0.023 4.023 15 N -0.363 5.363 16 C 0.300 3.700 17 O -0.466 6.466 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.100 4.100 21 C -0.191 4.191 22 C -0.078 4.078 23 N -0.226 5.226 24 C -0.065 4.065 25 H 0.061 0.939 26 H 0.209 0.791 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.234 0.766 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.255 0.745 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.179 0.821 37 H 0.192 0.808 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.037 -26.106 2.202 26.199 hybrid contribution 0.054 1.643 0.328 1.677 sum 0.017 -24.463 2.531 24.593 Atomic orbital electron populations 1.69825 1.06602 1.26211 1.59097 1.25601 0.96437 1.01202 1.03522 0.85194 0.77189 0.79048 0.78205 1.20397 1.22088 1.20340 1.19596 0.91484 0.85390 1.41751 0.90688 1.42411 1.05747 1.00749 1.89390 1.21422 0.94334 0.85884 0.98983 1.22077 0.93463 0.91238 0.88259 0.87991 1.86552 1.38089 1.96207 1.15964 1.21792 0.92157 0.85473 1.02863 1.45807 1.11555 1.04914 1.74062 1.21087 0.89493 0.84376 0.75066 1.90729 1.19291 1.85296 1.51237 1.20656 0.96656 0.87257 1.08436 1.20519 1.00606 0.96989 0.94626 1.21843 0.95190 0.95069 0.97925 1.22454 0.99177 0.96439 1.01056 1.23223 0.96691 1.00198 0.87647 1.67665 1.13091 1.12115 1.29728 1.22867 0.93541 0.90884 0.99228 0.93939 0.79072 0.95020 0.95313 0.76626 0.90964 0.91286 0.74510 0.84825 0.84662 0.83063 0.82054 0.80787 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -36.91 5.55 -343.45 -1.91 -38.82 16 10 C 0.12 4.50 5.90 86.38 0.51 5.01 16 11 C 0.11 3.07 3.09 30.59 0.09 3.17 16 12 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 13 O -0.56 -15.97 13.03 -148.98 -1.94 -17.91 16 14 C 0.10 2.40 5.34 86.38 0.46 2.86 16 15 N -0.71 -13.32 5.45 -463.06 -2.52 -15.84 16 16 C 0.51 10.52 7.82 87.66 0.69 11.20 16 17 O -0.59 -17.80 16.03 -3.03 -0.05 -17.85 16 18 C -0.09 -1.10 5.86 29.10 0.17 -0.93 16 19 C -0.13 -2.15 4.39 -19.77 -0.09 -2.24 16 20 C -0.07 -1.16 9.86 22.47 0.22 -0.94 16 21 C -0.17 -2.48 10.11 22.36 0.23 -2.26 16 22 C 0.08 1.37 11.18 84.68 0.95 2.32 16 23 N -0.52 -11.60 10.36 -195.85 -2.03 -13.63 16 24 C 0.09 1.84 10.86 84.67 0.92 2.76 16 25 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.38 20.27 7.67 -92.71 -0.71 19.56 16 27 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.38 8.95 9.04 -74.06 -0.67 8.28 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.42 6.06 8.35 -92.71 -0.77 5.28 16 33 H 0.13 0.97 8.10 -2.38 -0.02 0.95 16 34 H 0.14 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -76.96 334.58 -1.74 -78.69 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -1.06 Total: 32.23 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.45 Total: 4.05 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -6.18 Total: -127.11 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.99 Total: -35.76 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.96 -1.74 -78.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482723144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.912 kcal (2) G-P(sol) polarization free energy of solvation -76.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds