Wall clock time and date at job start Wed Apr 15 2020 11:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46940 * 179.51799 * 3 2 1 5 5 N 1.46500 * 109.47353 * 175.02338 * 4 3 2 6 6 C 1.46503 * 119.99750 * 274.89278 * 5 4 3 7 7 C 1.50700 * 109.47152 * 269.99367 * 6 5 4 8 8 H 1.08002 * 119.99549 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00080 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47443 * 59.99533 * 11 9 7 13 13 H 1.48504 * 109.46984 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46638 * 299.99135 * 11 9 7 15 15 C 1.34776 * 119.99945 * 94.88532 * 5 4 3 16 16 O 1.21277 * 120.00054 * 5.45795 * 15 5 4 17 17 C 1.50704 * 119.99974 * 185.45383 * 15 5 4 18 18 H 1.09003 * 109.12834 * 34.64724 * 17 15 5 19 19 C 1.52917 * 109.30136 * 275.16894 * 17 15 5 20 20 C 1.53341 * 108.67623 * 188.93605 * 19 17 15 21 21 C 1.53070 * 108.42635 * 67.52781 * 20 19 17 22 22 C 1.50196 * 109.83204 * 310.89107 * 21 20 19 23 23 O 1.21277 * 118.25880 * 197.79525 * 22 21 20 24 24 N 1.33353 * 123.49032 * 18.06857 * 22 21 20 25 25 H 1.09000 * 109.47070 * 59.51906 * 3 2 1 26 26 H 1.09004 * 109.47054 * 299.51920 * 3 2 1 27 27 H 1.08999 * 109.47461 * 55.02445 * 4 3 2 28 28 H 1.09004 * 109.47220 * 295.02355 * 4 3 2 29 29 H 1.08995 * 109.47517 * 29.99573 * 6 5 4 30 30 H 1.09009 * 109.46735 * 149.99702 * 6 5 4 31 31 H 0.97004 * 119.99545 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.60441 * 308.69205 * 19 17 15 33 33 H 1.09007 * 109.60376 * 69.01422 * 19 17 15 34 34 H 1.09001 * 109.67853 * 187.26630 * 20 19 17 35 35 H 1.09003 * 109.67194 * 307.75711 * 20 19 17 36 36 H 1.08995 * 109.39747 * 71.23414 * 21 20 19 37 37 H 1.09004 * 109.39736 * 190.97054 * 21 20 19 38 38 H 0.97004 * 117.94109 * 177.50229 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.4433 -0.0121 5 7 4.5774 1.4468 0.1077 6 6 5.2040 1.3875 1.4306 7 6 5.4100 2.7864 1.9521 8 1 5.1043 3.6347 1.3576 9 6 5.9885 2.9832 3.1879 10 7 6.3602 1.9501 3.9120 11 14 6.2432 4.7171 3.8345 12 1 4.9309 5.4041 3.9392 13 1 6.8784 4.6570 5.1755 14 1 7.1225 5.4685 2.9030 15 6 5.3443 1.5044 -0.9992 16 8 4.8289 1.6530 -2.0869 17 6 6.8422 1.3843 -0.8852 18 1 7.0847 0.6940 -0.0772 19 6 7.4371 2.7577 -0.5722 20 6 8.9640 2.6677 -0.6805 21 6 9.3319 2.4297 -2.1471 22 6 8.5067 1.3047 -2.7033 23 8 8.8817 0.7676 -3.7240 24 7 7.3807 0.8684 -2.1374 25 1 2.9716 -0.5205 -0.8856 26 1 2.9716 -0.5055 0.8943 27 1 2.6828 1.9891 0.8253 28 1 2.8284 1.9228 -0.9474 29 1 4.5581 0.8364 2.1142 30 1 6.1671 0.8827 1.3542 31 1 6.7670 2.0887 4.7817 32 1 7.0623 3.4902 -1.2872 33 1 7.1566 3.0562 0.4380 34 1 9.4119 3.6000 -0.3364 35 1 9.3269 1.8397 -0.0715 36 1 9.1447 3.3382 -2.7193 37 1 10.3882 2.1699 -2.2178 38 1 6.8916 0.1606 -2.5854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270251161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:50 Heat of formation + Delta-G solvation = -56.944588 kcal Electronic energy + Delta-G solvation = -22204.800716 eV Core-core repulsion = 18853.861250 eV Total energy + Delta-G solvation = -3350.939466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50480 -39.04783 -36.83108 -35.93765 -35.43260 -33.06100 -32.77904 -31.48236 -29.38005 -27.45037 -25.49449 -23.63213 -23.01137 -22.49890 -19.10966 -18.86996 -17.60588 -17.07644 -16.85599 -16.58247 -16.07784 -15.23046 -14.95384 -14.75376 -14.60392 -14.30780 -13.85517 -13.56943 -13.42408 -13.33558 -12.84462 -12.60122 -12.37025 -12.30393 -11.84830 -11.81160 -11.53260 -11.26056 -11.15727 -10.93395 -10.84820 -10.77910 -10.63806 -10.31507 -10.00003 -9.83271 -9.38538 -8.84978 -8.62714 -8.10391 -6.39071 -4.46795 2.70580 2.82369 2.87756 2.98186 3.11450 3.18730 3.20909 3.32744 3.71343 4.15864 4.25328 4.77909 4.84042 4.94454 4.99193 5.04094 5.14322 5.23249 5.30481 5.49237 5.56119 5.61299 5.87930 5.92096 5.95662 6.08817 6.15232 6.36451 6.43234 6.63640 6.87954 6.95993 7.19079 7.53673 7.54987 7.63722 7.80476 7.95514 8.38886 8.52444 8.66598 9.21103 10.67193 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.008064 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.072459 B = 3471.555902 C = 5863.020792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.220 3.780 3 C -0.045 4.045 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.230 3.770 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.071 3.929 10 N -0.885 5.885 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.509 3.491 16 O -0.558 6.558 17 C 0.130 3.870 18 H 0.106 0.894 19 C -0.137 4.137 20 C -0.120 4.120 21 C -0.137 4.137 22 C 0.526 3.474 23 O -0.570 6.570 24 N -0.698 5.698 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.268 0.732 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -0.743 -3.417 4.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.098 4.098 3 C -0.086 4.086 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.111 3.889 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.134 4.134 10 N -0.522 5.522 11 Si 0.720 3.280 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.295 3.705 16 O -0.437 6.437 17 C 0.022 3.978 18 H 0.123 0.877 19 C -0.174 4.174 20 C -0.157 4.157 21 C -0.176 4.176 22 C 0.313 3.687 23 O -0.450 6.450 24 N -0.349 5.349 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.916 -0.817 -4.175 4.665 hybrid contribution 0.291 0.681 0.575 0.937 sum 2.206 -0.137 -3.599 4.224 Atomic orbital electron populations 1.81192 1.13065 1.08700 1.09536 1.29070 0.95098 0.93029 0.92634 1.19757 0.81448 1.01409 1.06012 1.21152 0.81501 0.93312 1.04316 1.48173 1.04968 1.70367 1.08517 1.19634 0.94115 0.98059 0.77080 1.21384 1.41762 0.92260 1.02904 0.91722 1.24908 0.94912 0.97230 0.96333 1.69888 1.40093 1.29857 1.12327 0.86625 0.78775 0.84270 0.78322 1.20094 1.21102 1.19818 1.20628 0.89185 0.76518 0.84121 1.90660 1.74941 1.50667 1.27468 1.20959 0.91020 0.99219 0.86650 0.87699 1.22092 0.94718 0.93685 1.06933 1.21645 0.96116 1.03360 0.94622 1.21696 1.00395 0.97649 0.97892 1.20141 0.80890 0.84118 0.83517 1.90721 1.70476 1.58476 1.25299 1.45322 1.24762 1.39972 1.24864 0.87498 0.86794 0.89258 0.89560 0.94030 0.93784 0.92183 0.91344 0.85238 0.90260 0.90755 0.88419 0.88507 0.76544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.13 18.54 42.16 0.78 -6.35 16 2 C 0.22 2.94 15.43 -20.76 -0.32 2.62 16 3 C -0.04 -0.51 6.02 -29.52 -0.18 -0.69 16 4 C 0.12 1.73 5.46 -4.04 -0.02 1.71 16 5 N -0.59 -9.47 2.46 -175.06 -0.43 -9.90 16 6 C 0.23 4.24 4.91 -5.19 -0.03 4.21 16 7 C -0.54 -11.50 7.05 -34.44 -0.24 -11.75 16 8 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.07 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.88 -20.99 13.29 55.43 0.74 -20.25 16 11 Si 0.89 18.03 29.54 -169.99 -5.02 13.01 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 C 0.51 8.44 6.76 -10.98 -0.07 8.37 16 16 O -0.56 -10.55 16.02 5.56 0.09 -10.46 16 17 C 0.13 1.93 2.74 -69.53 -0.19 1.74 16 18 H 0.11 1.52 6.18 -51.93 -0.32 1.20 16 19 C -0.14 -1.99 5.21 -26.60 -0.14 -2.13 16 20 C -0.12 -1.45 6.03 -26.52 -0.16 -1.61 16 21 C -0.14 -1.67 6.03 -28.09 -0.17 -1.84 16 22 C 0.53 8.23 7.71 -11.86 -0.09 8.13 16 23 O -0.57 -10.84 17.78 5.56 0.10 -10.74 16 24 N -0.70 -10.46 4.79 -55.99 -0.27 -10.73 16 25 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.09 1.28 7.22 -51.93 -0.37 0.90 16 29 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.04 0.82 5.80 -51.92 -0.30 0.52 16 31 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 32 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.13 2.16 5.45 -51.93 -0.28 1.87 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.40 5.95 8.55 -40.82 -0.35 5.60 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -27.77 325.00 -5.80 -33.57 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.97 Total: 6.70 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -1.71 Total: 10.26 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.82 Total: -47.23 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: 0.19 Total: -21.20 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.01 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.77 -5.80 -33.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270251161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.376 kcal (2) G-P(sol) polarization free energy of solvation -27.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds