Wall clock time and date at job start Wed Apr 15 2020 11:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46940 * 179.51799 * 3 2 1 5 5 N 1.46500 * 109.47353 * 175.02338 * 4 3 2 6 6 C 1.46503 * 119.99750 * 274.89278 * 5 4 3 7 7 C 1.50700 * 109.47152 * 269.99367 * 6 5 4 8 8 H 1.08002 * 119.99549 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00287 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99674 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00080 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47443 * 59.99533 * 11 9 7 13 13 H 1.48504 * 109.46984 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46638 * 299.99135 * 11 9 7 15 15 C 1.34776 * 119.99945 * 94.88532 * 5 4 3 16 16 O 1.21277 * 120.00054 * 5.45795 * 15 5 4 17 17 C 1.50704 * 119.99974 * 185.45383 * 15 5 4 18 18 H 1.09003 * 109.12834 * 34.64724 * 17 15 5 19 19 C 1.52917 * 109.30136 * 275.16894 * 17 15 5 20 20 C 1.53341 * 108.67623 * 188.93605 * 19 17 15 21 21 C 1.53070 * 108.42635 * 67.52781 * 20 19 17 22 22 C 1.50196 * 109.83204 * 310.89107 * 21 20 19 23 23 O 1.21277 * 118.25880 * 197.79525 * 22 21 20 24 24 N 1.33353 * 123.49032 * 18.06857 * 22 21 20 25 25 H 1.09000 * 109.47070 * 59.51906 * 3 2 1 26 26 H 1.09004 * 109.47054 * 299.51920 * 3 2 1 27 27 H 1.08999 * 109.47461 * 55.02445 * 4 3 2 28 28 H 1.09004 * 109.47220 * 295.02355 * 4 3 2 29 29 H 1.08995 * 109.47517 * 29.99573 * 6 5 4 30 30 H 1.09009 * 109.46735 * 149.99702 * 6 5 4 31 31 H 0.97004 * 119.99545 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.60441 * 308.69205 * 19 17 15 33 33 H 1.09007 * 109.60376 * 69.01422 * 19 17 15 34 34 H 1.09001 * 109.67853 * 187.26630 * 20 19 17 35 35 H 1.09003 * 109.67194 * 307.75711 * 20 19 17 36 36 H 1.08995 * 109.39747 * 71.23414 * 21 20 19 37 37 H 1.09004 * 109.39736 * 190.97054 * 21 20 19 38 38 H 0.97004 * 117.94109 * 177.50229 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1173 1.4433 -0.0121 5 7 4.5774 1.4468 0.1077 6 6 5.2040 1.3875 1.4306 7 6 5.4100 2.7864 1.9521 8 1 5.1043 3.6347 1.3576 9 6 5.9885 2.9832 3.1879 10 7 6.3602 1.9501 3.9120 11 14 6.2432 4.7171 3.8345 12 1 4.9309 5.4041 3.9392 13 1 6.8784 4.6570 5.1755 14 1 7.1225 5.4685 2.9030 15 6 5.3443 1.5044 -0.9992 16 8 4.8289 1.6530 -2.0869 17 6 6.8422 1.3843 -0.8852 18 1 7.0847 0.6940 -0.0772 19 6 7.4371 2.7577 -0.5722 20 6 8.9640 2.6677 -0.6805 21 6 9.3319 2.4297 -2.1471 22 6 8.5067 1.3047 -2.7033 23 8 8.8817 0.7676 -3.7240 24 7 7.3807 0.8684 -2.1374 25 1 2.9716 -0.5205 -0.8856 26 1 2.9716 -0.5055 0.8943 27 1 2.6828 1.9891 0.8253 28 1 2.8284 1.9228 -0.9474 29 1 4.5581 0.8364 2.1142 30 1 6.1671 0.8827 1.3542 31 1 6.7670 2.0887 4.7817 32 1 7.0623 3.4902 -1.2872 33 1 7.1566 3.0562 0.4380 34 1 9.4119 3.6000 -0.3364 35 1 9.3269 1.8397 -0.0715 36 1 9.1447 3.3382 -2.7193 37 1 10.3882 2.1699 -2.2178 38 1 6.8916 0.1606 -2.5854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270251161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:49 Heat of formation + Delta-G solvation = -74.004901 kcal Electronic energy + Delta-G solvation = -22205.540507 eV Core-core repulsion = 18853.861250 eV Total energy + Delta-G solvation = -3351.679257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76816 -40.35384 -38.01529 -37.18722 -36.82176 -34.64274 -33.89304 -32.74608 -30.56622 -29.01719 -26.63625 -25.05480 -24.33548 -23.65740 -20.38703 -20.04787 -18.82052 -18.39979 -18.17039 -18.06840 -17.34912 -16.48796 -16.34004 -15.98097 -15.88786 -15.60712 -15.04032 -14.74336 -14.65791 -14.45239 -14.24069 -14.02023 -13.62732 -13.52189 -13.24052 -13.03920 -12.81760 -12.71385 -12.51429 -12.39302 -12.11834 -11.83117 -11.78604 -11.75008 -11.59062 -11.15632 -10.65692 -10.48981 -9.97791 -9.51884 -8.10355 -6.19905 1.49402 1.50767 1.55674 1.57953 1.60922 1.75798 1.78992 2.07770 2.48125 2.53457 3.15351 3.22970 3.57854 3.67654 3.87279 3.98380 4.08978 4.14480 4.22197 4.36121 4.56593 4.61027 4.83813 4.86441 4.93017 4.99950 5.05592 5.12908 5.31975 5.35476 5.45204 5.70618 5.74833 5.87452 6.16682 6.33160 6.54423 6.55655 6.89806 7.15668 7.27129 7.50338 8.94480 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.008064 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.072459 B = 3471.555902 C = 5863.020792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.244 3.756 3 C -0.031 4.031 4 C 0.120 3.880 5 N -0.586 5.586 6 C 0.241 3.759 7 C -0.537 4.537 8 H 0.057 0.943 9 C 0.037 3.963 10 N -0.911 5.911 11 Si 0.935 3.065 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.509 3.491 16 O -0.581 6.581 17 C 0.134 3.866 18 H 0.113 0.887 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.130 4.130 22 C 0.520 3.480 23 O -0.608 6.608 24 N -0.695 5.695 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.266 0.734 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 -0.458 -3.384 5.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.073 4.073 3 C -0.072 4.072 4 C -0.005 4.005 5 N -0.315 5.315 6 C 0.121 3.879 7 C -0.576 4.576 8 H 0.075 0.925 9 C -0.165 4.165 10 N -0.550 5.550 11 Si 0.762 3.238 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.189 1.189 15 C 0.297 3.703 16 O -0.462 6.462 17 C 0.026 3.974 18 H 0.131 0.869 19 C -0.172 4.172 20 C -0.150 4.150 21 C -0.169 4.169 22 C 0.310 3.690 23 O -0.491 6.491 24 N -0.345 5.345 25 H 0.142 0.858 26 H 0.150 0.850 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.797 -0.519 -4.130 5.015 hybrid contribution -0.028 0.610 0.541 0.816 sum 2.770 0.091 -3.589 4.535 Atomic orbital electron populations 1.81221 1.14452 1.10083 1.11212 1.29273 0.95171 0.91685 0.91185 1.19725 0.79971 0.99792 1.07713 1.21207 0.80415 0.95063 1.03828 1.48078 1.05718 1.70081 1.07654 1.19387 0.94233 0.96535 0.77719 1.21560 1.40348 0.93262 1.02415 0.92499 1.25351 0.95258 0.99085 0.96807 1.69952 1.41518 1.30928 1.12582 0.85967 0.78229 0.81923 0.77712 1.20891 1.21708 1.18941 1.20878 0.89843 0.75884 0.83703 1.90655 1.75523 1.51837 1.28213 1.20959 0.89900 0.99783 0.86734 0.86942 1.22018 0.96699 0.93051 1.05446 1.21624 0.94079 1.04619 0.94649 1.21727 1.00745 0.96675 0.97753 1.20785 0.80877 0.84400 0.82971 1.90705 1.71402 1.59912 1.27039 1.45341 1.24648 1.39715 1.24746 0.85808 0.84976 0.89616 0.90214 0.94469 0.93564 0.92501 0.91891 0.87076 0.88270 0.90347 0.87120 0.86604 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.33 18.54 20.01 0.37 -14.96 16 2 C 0.24 6.21 15.43 89.44 1.38 7.59 16 3 C -0.03 -0.65 6.02 28.79 0.17 -0.47 16 4 C 0.12 3.22 5.46 86.38 0.47 3.69 16 5 N -0.59 -18.00 2.46 -826.14 -2.03 -20.03 16 6 C 0.24 8.54 4.91 85.63 0.42 8.96 16 7 C -0.54 -22.06 7.05 25.60 0.18 -21.88 16 8 H 0.06 2.41 7.81 -2.91 -0.02 2.38 16 9 C 0.04 1.60 5.46 84.65 0.46 2.06 16 10 N -0.91 -42.45 13.29 21.45 0.28 -42.16 16 11 Si 0.93 36.12 29.54 68.60 2.03 38.14 16 12 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 13 H -0.29 -11.47 7.11 99.48 0.71 -10.77 16 14 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 15 C 0.51 16.26 6.76 87.66 0.59 16.85 16 16 O -0.58 -21.38 16.02 -3.02 -0.05 -21.43 16 17 C 0.13 3.81 2.74 44.36 0.12 3.93 16 18 H 0.11 3.06 6.18 -2.39 -0.01 3.04 16 19 C -0.13 -3.68 5.21 30.68 0.16 -3.52 16 20 C -0.11 -2.41 6.03 30.73 0.19 -2.22 16 21 C -0.13 -2.84 6.03 29.71 0.18 -2.66 16 22 C 0.52 15.53 7.71 87.72 0.68 16.21 16 23 O -0.61 -22.62 17.78 -3.02 -0.05 -22.67 16 24 N -0.69 -19.98 4.79 -450.23 -2.16 -22.14 16 25 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.09 2.38 8.11 -2.39 -0.02 2.36 16 28 H 0.08 2.28 7.22 -2.38 -0.02 2.27 16 29 H 0.04 1.38 8.07 -2.39 -0.02 1.36 16 30 H 0.05 1.65 5.80 -2.38 -0.01 1.64 16 31 H 0.27 12.14 8.31 -92.71 -0.77 11.37 16 32 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.11 3.53 5.45 -2.38 -0.01 3.52 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 36 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.40 11.54 8.55 -92.71 -0.79 10.75 16 Total: -1.00 -58.02 325.00 3.70 -54.32 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.30 Total: 22.40 kcal Atomic # 6 Polarization: 23.53 SS G_CDS: 5.00 Total: 28.54 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -3.53 Total: -99.29 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.10 Total: -44.10 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.14 kcal Total: -58.02 3.70 -54.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270251161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.686 kcal (2) G-P(sol) polarization free energy of solvation -58.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds