Wall clock time and date at job start Wed Apr 15 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47063 * 28.23730 * 3 2 1 5 5 N 1.46504 * 109.46958 * 184.94086 * 4 3 2 6 6 C 1.46501 * 119.99759 * 85.24120 * 5 4 3 7 7 C 1.50697 * 109.47179 * 90.00003 * 6 5 4 8 8 H 1.07995 * 119.99821 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99742 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00312 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47653 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.46998 * 300.00566 * 11 9 7 14 14 H 1.48503 * 109.47157 * 60.00318 * 11 9 7 15 15 C 1.34769 * 120.00380 * 265.24019 * 5 4 3 16 16 O 1.21283 * 119.99742 * 5.15591 * 15 5 4 17 17 C 1.50701 * 120.00434 * 185.15221 * 15 5 4 18 18 H 1.08996 * 109.29859 * 327.43516 * 17 15 5 19 19 C 1.52921 * 109.29822 * 86.81778 * 17 15 5 20 20 C 1.53346 * 108.67062 * 171.06617 * 19 17 15 21 21 C 1.53067 * 108.42960 * 292.46582 * 20 19 17 22 22 C 1.50187 * 109.88643 * 48.90124 * 21 20 19 23 23 O 1.21277 * 118.24058 * 162.44237 * 22 21 20 24 24 N 1.33344 * 123.50832 * 342.42106 * 22 21 20 25 25 H 1.09005 * 109.47072 * 268.23913 * 3 2 1 26 26 H 1.08997 * 109.47061 * 148.23676 * 3 2 1 27 27 H 1.08993 * 109.47345 * 64.94456 * 4 3 2 28 28 H 1.08995 * 109.47491 * 304.93931 * 4 3 2 29 29 H 1.09001 * 109.47252 * 329.99370 * 6 5 4 30 30 H 1.09011 * 109.46790 * 210.00163 * 6 5 4 31 31 H 0.97001 * 120.00441 * 359.97438 * 10 9 7 32 32 H 1.08991 * 109.60097 * 290.81990 * 19 17 15 33 33 H 1.08995 * 109.60345 * 51.31390 * 19 17 15 34 34 H 1.08998 * 109.67093 * 172.73281 * 20 19 17 35 35 H 1.08999 * 109.70681 * 52.21895 * 20 19 17 36 36 H 1.09001 * 109.39977 * 288.77773 * 21 20 19 37 37 H 1.08994 * 109.33503 * 168.98374 * 21 20 19 38 38 H 0.97004 * 117.94761 * 182.20409 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2700 -0.6825 5 7 4.5788 -1.3271 -0.5785 6 6 5.2063 -1.8924 0.6186 7 6 5.4141 -3.3724 0.4255 8 1 5.1097 -3.8446 -0.4968 9 6 5.9939 -4.1235 1.4259 10 7 6.3651 -3.5483 2.5488 11 14 6.2509 -5.9581 1.1868 12 1 6.8871 -6.5312 2.4002 13 1 4.9394 -6.6161 0.9585 14 1 7.1302 -6.1859 0.0120 15 6 5.3448 -0.8596 -1.5839 16 8 4.8293 -0.3073 -2.5327 17 6 6.8420 -1.0232 -1.5294 18 1 7.1719 -0.9768 -0.4917 19 6 7.2235 -2.3827 -2.1165 20 6 8.7489 -2.4440 -2.2617 21 6 9.1731 -1.4427 -3.3389 22 6 8.5281 -0.1111 -3.0811 23 8 8.9925 0.8669 -3.6276 24 7 7.4720 0.0532 -2.2837 25 1 2.9713 0.0324 1.0272 26 1 2.9709 0.8745 -0.5410 27 1 2.8294 -1.2593 -1.7333 28 1 2.6852 -2.1434 -0.1953 29 1 4.5604 -1.7255 1.4806 30 1 6.1688 -1.4091 0.7869 31 1 6.2313 -2.5956 2.6732 32 1 6.8875 -3.1764 -1.4494 33 1 6.7580 -2.5022 -3.0948 34 1 9.0492 -3.4495 -2.5566 35 1 9.2191 -2.1840 -1.3134 36 1 8.8646 -1.8111 -4.3173 37 1 10.2570 -1.3297 -3.3198 38 1 7.0998 0.9451 -2.2002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270251163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:53 Heat of formation + Delta-G solvation = -59.132017 kcal Electronic energy + Delta-G solvation = -22246.863267 eV Core-core repulsion = 18895.828947 eV Total energy + Delta-G solvation = -3351.034320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57175 -39.12953 -36.89265 -35.99428 -35.58473 -33.29621 -32.83506 -31.49798 -29.44372 -27.01973 -25.57424 -23.66761 -23.10194 -22.54676 -19.30784 -18.95014 -17.67197 -17.44131 -17.02942 -16.65685 -16.11436 -15.29600 -14.96320 -14.85155 -14.45334 -13.99369 -13.89177 -13.72374 -13.61274 -13.40216 -12.96091 -12.76357 -12.45608 -12.35173 -11.98187 -11.78737 -11.74163 -11.28685 -11.26888 -10.93295 -10.87159 -10.72855 -10.66527 -10.30830 -9.90701 -9.52926 -9.44956 -8.83949 -8.63732 -8.08852 -6.70813 -4.49410 2.65217 2.77344 2.82366 2.89418 3.22468 3.23996 3.28278 3.44290 3.65258 4.18641 4.25592 4.72488 4.75285 4.93111 4.97066 5.01682 5.06891 5.15368 5.23620 5.44491 5.48677 5.56025 5.82709 5.85548 5.87974 6.02395 6.06013 6.20172 6.31855 6.50295 6.56593 6.89222 6.98760 7.48605 7.58047 7.59344 7.75272 8.10891 8.34592 8.43452 8.51875 9.20962 10.65143 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.008037 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.391185 B = 3483.183564 C = 5813.036481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.219 3.781 3 C -0.045 4.045 4 C 0.125 3.875 5 N -0.585 5.585 6 C 0.221 3.779 7 C -0.622 4.622 8 H 0.061 0.939 9 C 0.030 3.970 10 N -0.897 5.897 11 Si 1.062 2.938 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.284 1.284 15 C 0.509 3.491 16 O -0.556 6.556 17 C 0.130 3.870 18 H 0.106 0.894 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.136 4.136 22 C 0.526 3.474 23 O -0.569 6.569 24 N -0.699 5.699 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.270 0.730 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 1.332 -4.285 5.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.099 4.099 3 C -0.086 4.086 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.101 3.899 7 C -0.661 4.661 8 H 0.079 0.921 9 C -0.177 4.177 10 N -0.532 5.532 11 Si 0.890 3.110 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.210 1.210 15 C 0.295 3.705 16 O -0.435 6.435 17 C 0.022 3.978 18 H 0.123 0.877 19 C -0.170 4.170 20 C -0.158 4.158 21 C -0.176 4.176 22 C 0.313 3.687 23 O -0.449 6.449 24 N -0.350 5.350 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.746 0.516 -4.310 4.679 hybrid contribution -0.478 1.596 -0.481 1.734 sum 1.268 2.113 -4.791 5.387 Atomic orbital electron populations 1.81196 1.13008 1.08793 1.09277 1.29049 0.95074 0.93016 0.92794 1.19742 0.81516 1.02341 1.04998 1.21166 0.81179 0.95797 1.01864 1.47991 1.05030 1.59021 1.19484 1.19692 0.93275 0.94893 0.82045 1.22239 1.46000 0.92702 1.05114 0.92122 1.25756 0.93168 1.06401 0.92349 1.70853 1.43429 1.13521 1.25387 0.83607 0.76831 0.74334 0.76273 1.20604 1.21286 1.20989 1.20639 0.89363 0.78279 0.82184 1.90669 1.74906 1.43929 1.33988 1.20965 0.90070 0.89087 0.97694 0.87659 1.22009 0.96103 0.95998 1.02868 1.21645 0.95746 0.99462 0.98902 1.21693 1.01923 0.92487 1.01502 1.20146 0.79680 0.91501 0.77359 1.90723 1.63185 1.40995 1.49959 1.45329 1.31042 1.12024 1.46592 0.87045 0.87308 0.89620 0.89234 0.95003 0.94950 0.91983 0.85831 0.91368 0.90134 0.90666 0.88403 0.88378 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.11 18.54 42.16 0.78 -6.33 16 2 C 0.22 2.95 15.43 -20.76 -0.32 2.63 16 3 C -0.04 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.13 1.78 5.38 -4.04 -0.02 1.76 16 5 N -0.59 -9.43 2.46 -175.06 -0.43 -9.86 16 6 C 0.22 4.04 4.26 -5.19 -0.02 4.02 16 7 C -0.62 -13.15 7.46 -34.44 -0.26 -13.41 16 8 H 0.06 1.31 7.43 -52.49 -0.39 0.92 16 9 C 0.03 0.68 5.46 -17.82 -0.10 0.59 16 10 N -0.90 -22.15 13.65 55.43 0.76 -21.39 16 11 Si 1.06 20.92 29.90 -169.99 -5.08 15.84 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.29 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 15 C 0.51 8.46 6.74 -10.99 -0.07 8.39 16 16 O -0.56 -10.42 16.14 5.55 0.09 -10.33 16 17 C 0.13 1.97 2.90 -69.52 -0.20 1.77 16 18 H 0.11 1.61 5.89 -51.93 -0.31 1.30 16 19 C -0.13 -1.91 5.28 -26.59 -0.14 -2.05 16 20 C -0.12 -1.45 6.03 -26.52 -0.16 -1.61 16 21 C -0.14 -1.66 6.03 -28.10 -0.17 -1.83 16 22 C 0.53 8.25 7.71 -11.87 -0.09 8.16 16 23 O -0.57 -10.83 17.78 5.56 0.10 -10.73 16 24 N -0.70 -10.58 4.80 -55.99 -0.27 -10.85 16 25 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 28 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 29 H 0.03 0.60 7.94 -51.93 -0.41 0.19 16 30 H 0.03 0.60 5.77 -51.92 -0.30 0.30 16 31 H 0.27 6.47 7.22 -40.82 -0.29 6.18 16 32 H 0.12 2.02 5.60 -51.93 -0.29 1.72 16 33 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 6.01 8.58 -40.82 -0.35 5.66 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -28.28 324.13 -5.80 -34.08 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.90 Total: 6.97 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.73 Total: 7.71 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.84 Total: -48.43 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.19 Total: -21.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.08 Total: 15.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.28 -5.80 -34.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270251163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.051 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds