Wall clock time and date at job start Wed Apr 15 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47063 * 28.23730 * 3 2 1 5 5 N 1.46504 * 109.46958 * 184.94086 * 4 3 2 6 6 C 1.46501 * 119.99759 * 85.24120 * 5 4 3 7 7 C 1.50697 * 109.47179 * 90.00003 * 6 5 4 8 8 H 1.07995 * 119.99821 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99742 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00312 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47653 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.46998 * 300.00566 * 11 9 7 14 14 H 1.48503 * 109.47157 * 60.00318 * 11 9 7 15 15 C 1.34769 * 120.00380 * 265.24019 * 5 4 3 16 16 O 1.21283 * 119.99742 * 5.15591 * 15 5 4 17 17 C 1.50701 * 120.00434 * 185.15221 * 15 5 4 18 18 H 1.08996 * 109.29859 * 327.43516 * 17 15 5 19 19 C 1.52921 * 109.29822 * 86.81778 * 17 15 5 20 20 C 1.53346 * 108.67062 * 171.06617 * 19 17 15 21 21 C 1.53067 * 108.42960 * 292.46582 * 20 19 17 22 22 C 1.50187 * 109.88643 * 48.90124 * 21 20 19 23 23 O 1.21277 * 118.24058 * 162.44237 * 22 21 20 24 24 N 1.33344 * 123.50832 * 342.42106 * 22 21 20 25 25 H 1.09005 * 109.47072 * 268.23913 * 3 2 1 26 26 H 1.08997 * 109.47061 * 148.23676 * 3 2 1 27 27 H 1.08993 * 109.47345 * 64.94456 * 4 3 2 28 28 H 1.08995 * 109.47491 * 304.93931 * 4 3 2 29 29 H 1.09001 * 109.47252 * 329.99370 * 6 5 4 30 30 H 1.09011 * 109.46790 * 210.00163 * 6 5 4 31 31 H 0.97001 * 120.00441 * 359.97438 * 10 9 7 32 32 H 1.08991 * 109.60097 * 290.81990 * 19 17 15 33 33 H 1.08995 * 109.60345 * 51.31390 * 19 17 15 34 34 H 1.08998 * 109.67093 * 172.73281 * 20 19 17 35 35 H 1.08999 * 109.70681 * 52.21895 * 20 19 17 36 36 H 1.09001 * 109.39977 * 288.77773 * 21 20 19 37 37 H 1.08994 * 109.33503 * 168.98374 * 21 20 19 38 38 H 0.97004 * 117.94761 * 182.20409 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2700 -0.6825 5 7 4.5788 -1.3271 -0.5785 6 6 5.2063 -1.8924 0.6186 7 6 5.4141 -3.3724 0.4255 8 1 5.1097 -3.8446 -0.4968 9 6 5.9939 -4.1235 1.4259 10 7 6.3651 -3.5483 2.5488 11 14 6.2509 -5.9581 1.1868 12 1 6.8871 -6.5312 2.4002 13 1 4.9394 -6.6161 0.9585 14 1 7.1302 -6.1859 0.0120 15 6 5.3448 -0.8596 -1.5839 16 8 4.8293 -0.3073 -2.5327 17 6 6.8420 -1.0232 -1.5294 18 1 7.1719 -0.9768 -0.4917 19 6 7.2235 -2.3827 -2.1165 20 6 8.7489 -2.4440 -2.2617 21 6 9.1731 -1.4427 -3.3389 22 6 8.5281 -0.1111 -3.0811 23 8 8.9925 0.8669 -3.6276 24 7 7.4720 0.0532 -2.2837 25 1 2.9713 0.0324 1.0272 26 1 2.9709 0.8745 -0.5410 27 1 2.8294 -1.2593 -1.7333 28 1 2.6852 -2.1434 -0.1953 29 1 4.5604 -1.7255 1.4806 30 1 6.1688 -1.4091 0.7869 31 1 6.2313 -2.5956 2.6732 32 1 6.8875 -3.1764 -1.4494 33 1 6.7580 -2.5022 -3.0948 34 1 9.0492 -3.4495 -2.5566 35 1 9.2191 -2.1840 -1.3134 36 1 8.8646 -1.8111 -4.3173 37 1 10.2570 -1.3297 -3.3198 38 1 7.0998 0.9451 -2.2002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270251163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:52 Heat of formation + Delta-G solvation = -76.655761 kcal Electronic energy + Delta-G solvation = -22247.623154 eV Core-core repulsion = 18895.828947 eV Total energy + Delta-G solvation = -3351.794207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84260 -40.43712 -38.08790 -37.24484 -36.99307 -34.87012 -33.95465 -32.76734 -30.63090 -28.58685 -26.72320 -25.11595 -24.45172 -23.70824 -20.63926 -20.11307 -19.06519 -18.69273 -18.30738 -18.05475 -17.38067 -16.51410 -16.15931 -16.08459 -15.72273 -15.52333 -15.14413 -15.04072 -14.81275 -14.49092 -14.20200 -14.16734 -13.76610 -13.60701 -13.35478 -13.09674 -12.93051 -12.67649 -12.50850 -12.37654 -11.93386 -11.89434 -11.85561 -11.79764 -11.23788 -11.11299 -10.71141 -10.45629 -10.03475 -9.54357 -8.47406 -6.25603 1.42253 1.52296 1.66294 1.69221 1.70794 1.72603 1.88703 1.99364 2.43493 2.65861 3.07750 3.28362 3.46638 3.62785 3.80601 3.92569 4.00770 4.05683 4.14013 4.29450 4.46854 4.56515 4.71705 4.76417 4.83462 4.89110 4.93128 5.07680 5.08521 5.25274 5.34130 5.58577 5.67228 5.94251 6.20613 6.28646 6.49074 6.52595 6.69485 7.08086 7.18472 7.49434 8.89449 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.008037 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.391185 B = 3483.183564 C = 5813.036481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.243 3.757 3 C -0.031 4.031 4 C 0.122 3.878 5 N -0.581 5.581 6 C 0.229 3.771 7 C -0.610 4.610 8 H 0.056 0.944 9 C -0.008 4.008 10 N -0.931 5.931 11 Si 1.093 2.907 12 H -0.295 1.295 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.509 3.491 16 O -0.576 6.576 17 C 0.134 3.866 18 H 0.106 0.894 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.129 4.129 22 C 0.520 3.480 23 O -0.607 6.607 24 N -0.696 5.696 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 0.764 -4.878 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.074 4.074 3 C -0.072 4.072 4 C -0.002 4.002 5 N -0.311 5.311 6 C 0.108 3.892 7 C -0.648 4.648 8 H 0.074 0.926 9 C -0.209 4.209 10 N -0.568 5.568 11 Si 0.918 3.082 12 H -0.221 1.221 13 H -0.209 1.209 14 H -0.187 1.187 15 C 0.297 3.703 16 O -0.457 6.457 17 C 0.026 3.974 18 H 0.123 0.877 19 C -0.168 4.168 20 C -0.150 4.150 21 C -0.168 4.168 22 C 0.309 3.691 23 O -0.489 6.489 24 N -0.346 5.346 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.405 -0.061 -4.911 5.468 hybrid contribution -0.731 1.793 -0.322 1.963 sum 1.674 1.732 -5.233 5.760 Atomic orbital electron populations 1.81225 1.14339 1.10188 1.10837 1.29223 0.95114 0.91693 0.91409 1.19699 0.80126 1.01431 1.05932 1.21228 0.80069 0.97010 1.01928 1.47909 1.05785 1.58618 1.18771 1.19478 0.93510 0.93570 0.82609 1.22422 1.44186 0.93995 1.04241 0.92609 1.26595 0.93265 1.08839 0.92230 1.70935 1.45835 1.13397 1.26649 0.83189 0.77137 0.71550 0.76336 1.22120 1.20911 1.18719 1.20856 0.89947 0.77756 0.81758 1.90664 1.75431 1.44931 1.34680 1.20948 0.89076 0.89616 0.97749 0.87675 1.21959 0.98035 0.94621 1.02164 1.21631 0.93665 1.00751 0.98972 1.21731 1.02709 0.90222 1.02183 1.20828 0.79321 0.92445 0.76492 1.90707 1.64251 1.42551 1.51430 1.45355 1.30908 1.11970 1.46345 0.85271 0.85935 0.90063 0.89538 0.95105 0.94672 0.92552 0.87496 0.91477 0.87785 0.90727 0.86846 0.86526 0.76814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.21 18.54 20.01 0.37 -14.84 16 2 C 0.24 6.22 15.43 89.44 1.38 7.60 16 3 C -0.03 -0.66 6.03 28.79 0.17 -0.48 16 4 C 0.12 3.29 5.38 86.38 0.46 3.76 16 5 N -0.58 -17.92 2.46 -826.15 -2.03 -19.95 16 6 C 0.23 8.09 4.26 85.63 0.36 8.46 16 7 C -0.61 -25.01 7.46 25.60 0.19 -24.82 16 8 H 0.06 2.33 7.43 -2.91 -0.02 2.31 16 9 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 10 N -0.93 -45.55 13.65 21.45 0.29 -45.26 16 11 Si 1.09 41.01 29.90 68.60 2.05 43.06 16 12 H -0.30 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 14 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 15 C 0.51 16.29 6.74 87.66 0.59 16.88 16 16 O -0.58 -20.93 16.14 -3.04 -0.05 -20.98 16 17 C 0.13 3.88 2.90 44.36 0.13 4.01 16 18 H 0.11 3.08 5.89 -2.39 -0.01 3.07 16 19 C -0.13 -3.50 5.28 30.68 0.16 -3.34 16 20 C -0.11 -2.40 6.03 30.73 0.19 -2.22 16 21 C -0.13 -2.80 6.03 29.71 0.18 -2.62 16 22 C 0.52 15.58 7.71 87.72 0.68 16.25 16 23 O -0.61 -22.64 17.78 -3.02 -0.05 -22.69 16 24 N -0.70 -20.32 4.80 -450.23 -2.16 -22.48 16 25 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 2.29 7.36 -2.39 -0.02 2.27 16 28 H 0.09 2.39 8.11 -2.39 -0.02 2.37 16 29 H 0.03 1.13 7.94 -2.39 -0.02 1.11 16 30 H 0.04 1.26 5.77 -2.38 -0.01 1.25 16 31 H 0.26 12.64 7.22 -92.71 -0.67 11.97 16 32 H 0.11 3.30 5.60 -2.39 -0.01 3.28 16 33 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 36 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.40 11.72 8.58 -92.71 -0.80 10.93 16 Total: -1.00 -59.41 324.13 3.78 -55.63 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.40 Total: 23.91 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 4.96 Total: 23.60 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -3.53 Total: -102.53 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.10 Total: -43.67 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.05 Total: 43.06 kcal Total: -59.41 3.78 -55.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270251163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.027 kcal (2) G-P(sol) polarization free energy of solvation -59.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds