Wall clock time and date at job start Wed Apr 15 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86806 * 119.99585 * 2 1 4 4 H 1.48493 * 109.47161 * 270.00222 * 3 2 1 5 5 H 1.48502 * 109.47093 * 30.00672 * 3 2 1 6 6 H 1.48505 * 109.46879 * 150.00507 * 3 2 1 7 7 C 1.38947 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99656 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00039 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00248 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47338 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00115 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99927 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99983 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47247 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47487 * 179.97438 * 17 16 14 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 0.96993 * 120.00139 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00570 * 0.02562 * 9 7 2 26 26 H 1.09009 * 109.47077 * 59.99932 * 12 10 9 27 27 H 1.08993 * 109.47079 * 300.00073 * 12 10 9 28 28 H 0.96998 * 119.99552 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.47297 * 59.99935 * 16 14 13 30 30 H 1.08993 * 109.47290 * 299.99929 * 16 14 13 31 31 H 1.09009 * 109.46741 * 60.00270 * 17 16 14 32 32 H 1.08993 * 109.47373 * 300.00436 * 17 16 14 33 33 H 1.09006 * 109.46659 * 59.99927 * 18 17 16 34 34 H 1.09005 * 109.47449 * 300.01004 * 18 17 16 35 35 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 36 36 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 38 38 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0027 15 8 0.5544 -7.4687 -0.0028 16 6 2.7262 -8.3925 -0.0038 17 6 1.9613 -9.7176 -0.0043 18 6 2.9555 -10.8804 -0.0060 19 7 2.2231 -12.1492 -0.0071 20 6 1.8255 -12.8359 -1.1158 21 6 1.1829 -13.9510 -0.7132 22 6 1.1832 -13.9524 0.6958 23 6 1.8265 -12.8385 1.1004 24 1 -0.4850 0.8400 0.0004 25 1 0.3535 -2.3907 -0.0005 26 1 0.6176 -4.9205 -0.8914 27 1 0.6170 -4.9209 0.8885 28 1 3.1497 -5.7991 -0.0019 29 1 3.3529 -8.3355 0.8862 30 1 3.3527 -8.3339 -0.8937 31 1 1.3342 -9.7748 -0.8941 32 1 1.3349 -9.7759 0.8858 33 1 3.5829 -10.8233 0.8836 34 1 3.5816 -10.8219 -0.8964 35 1 1.9924 -12.5362 -2.1400 36 1 0.7479 -14.7045 -1.3531 37 1 0.7482 -14.7070 1.3343 38 1 1.9983 -12.5433 2.1250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:00 Heat of formation + Delta-G solvation = -35.917480 kcal Electronic energy + Delta-G solvation = -20120.404504 eV Core-core repulsion = 16770.376841 eV Total energy + Delta-G solvation = -3350.027662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25607 -39.70109 -38.20866 -35.23510 -34.48760 -33.72517 -31.59428 -31.37876 -28.91446 -28.27355 -26.34573 -24.48078 -22.46152 -20.61206 -20.22121 -20.07639 -19.59906 -18.19097 -17.77382 -16.87539 -16.11355 -15.70131 -15.46803 -14.97337 -14.74804 -14.47670 -14.16204 -14.05385 -13.57909 -13.55484 -13.23779 -12.65795 -12.26210 -12.25267 -12.23052 -12.19831 -11.86295 -11.84211 -11.67122 -11.16250 -11.11188 -10.49674 -10.36292 -9.82369 -9.68357 -8.87598 -8.76558 -8.68925 -8.30238 -8.15109 -6.55884 -3.98219 2.12738 2.73266 2.74339 2.92850 3.08278 3.18757 3.23041 3.34472 3.68581 4.07277 4.37361 4.55060 4.63821 4.82368 4.88623 4.94536 5.02689 5.07115 5.12520 5.18772 5.35283 5.42425 5.51099 5.72007 5.85745 5.90255 5.96028 6.01752 6.14295 6.17628 6.60253 6.85071 7.08921 7.23086 7.41650 7.72168 7.87055 8.35557 8.40825 8.99809 9.34149 9.81719 10.60882 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.066518 B = 0.002218 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.840268 B =12621.677788 C =12831.515785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.510 3.490 15 O -0.549 6.549 16 C -0.137 4.137 17 C -0.119 4.119 18 C 0.103 3.897 19 N -0.446 5.446 20 C -0.015 4.015 21 C -0.206 4.206 22 C -0.206 4.206 23 C -0.015 4.015 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.411 0.589 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -20.672 -0.004 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.295 3.705 15 O -0.428 6.428 16 C -0.178 4.178 17 C -0.158 4.158 18 C -0.018 4.018 19 N -0.121 5.121 20 C -0.145 4.145 21 C -0.230 4.230 22 C -0.230 4.230 23 C -0.145 4.145 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.222 -20.290 0.003 20.725 hybrid contribution 0.146 1.063 -0.011 1.073 sum 4.369 -19.227 -0.008 19.717 Atomic orbital electron populations 1.69613 1.06026 1.28603 1.49137 1.25345 0.95685 0.99997 0.96720 0.85800 0.79216 0.80420 0.78514 1.20235 1.20761 1.19305 1.19728 0.93468 0.81985 1.48367 0.87652 1.41806 1.09508 1.04507 1.62450 1.19740 0.88290 0.85002 0.85729 1.90492 1.13705 1.86833 1.57521 1.20956 0.91924 0.85856 1.03228 1.45741 1.11620 1.04733 1.74049 1.20497 0.89668 0.83869 0.76428 1.90710 1.16927 1.84909 1.50224 1.21544 0.98484 0.92828 1.04923 1.21700 0.97785 0.91235 1.05033 1.21926 0.94173 0.81343 1.04404 1.44153 1.43767 1.18057 1.06142 1.21844 1.05632 0.95465 0.91579 1.20893 1.07127 0.99758 0.95236 1.20890 1.07139 0.99761 0.95226 1.21841 1.05610 0.95458 0.91605 0.91531 0.77016 0.89876 0.89870 0.75089 0.88494 0.88490 0.90321 0.90312 0.89138 0.89141 0.82364 0.84964 0.84966 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.05 55.50 0.72 -22.93 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.31 -8.22 9.68 -14.94 -0.14 -8.37 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.42 5.29 -10.97 -0.06 -13.48 16 10 C 0.43 9.59 7.85 -10.98 -0.09 9.50 16 11 O -0.60 -14.97 15.24 5.55 0.08 -14.88 16 12 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 13 N -0.71 -10.99 5.53 -61.47 -0.34 -11.33 16 14 C 0.51 7.26 7.83 -10.99 -0.09 7.17 16 15 O -0.55 -9.83 15.98 5.55 0.09 -9.74 16 16 C -0.14 -1.23 5.70 -27.88 -0.16 -1.39 16 17 C -0.12 -1.09 4.83 -26.73 -0.13 -1.22 16 18 C 0.10 0.72 6.09 -4.05 -0.02 0.70 16 19 N -0.45 -4.18 2.75 -117.13 -0.32 -4.50 16 20 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 21 C -0.21 -2.10 10.86 -39.78 -0.43 -2.53 16 22 C -0.21 -2.10 10.86 -39.78 -0.43 -2.53 16 23 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 26 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.41 6.15 7.44 -40.82 -0.30 5.85 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.86 8.10 -51.92 -0.42 0.44 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -32.53 335.01 -7.01 -39.54 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -5.21 Total: 13.87 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.00 Total: 3.13 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.00 Total: -52.24 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.17 Total: -24.62 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.53 -7.01 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.622 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds