Wall clock time and date at job start Wed Apr 15 2020 11:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86806 * 119.99585 * 2 1 4 4 H 1.48493 * 109.47161 * 270.00222 * 3 2 1 5 5 H 1.48502 * 109.47093 * 30.00672 * 3 2 1 6 6 H 1.48505 * 109.46879 * 150.00507 * 3 2 1 7 7 C 1.38947 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99656 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00039 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00116 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00248 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47338 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00115 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99927 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99983 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.47247 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47487 * 179.97438 * 17 16 14 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 0.96993 * 120.00139 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00570 * 0.02562 * 9 7 2 26 26 H 1.09009 * 109.47077 * 59.99932 * 12 10 9 27 27 H 1.08993 * 109.47079 * 300.00073 * 12 10 9 28 28 H 0.96998 * 119.99552 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.47297 * 59.99935 * 16 14 13 30 30 H 1.08993 * 109.47290 * 299.99929 * 16 14 13 31 31 H 1.09009 * 109.46741 * 60.00270 * 17 16 14 32 32 H 1.08993 * 109.47373 * 300.00436 * 17 16 14 33 33 H 1.09006 * 109.46659 * 59.99927 * 18 17 16 34 34 H 1.09005 * 109.47449 * 300.01004 * 18 17 16 35 35 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 36 36 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 38 38 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0027 15 8 0.5544 -7.4687 -0.0028 16 6 2.7262 -8.3925 -0.0038 17 6 1.9613 -9.7176 -0.0043 18 6 2.9555 -10.8804 -0.0060 19 7 2.2231 -12.1492 -0.0071 20 6 1.8255 -12.8359 -1.1158 21 6 1.1829 -13.9510 -0.7132 22 6 1.1832 -13.9524 0.6958 23 6 1.8265 -12.8385 1.1004 24 1 -0.4850 0.8400 0.0004 25 1 0.3535 -2.3907 -0.0005 26 1 0.6176 -4.9205 -0.8914 27 1 0.6170 -4.9209 0.8885 28 1 3.1497 -5.7991 -0.0019 29 1 3.3529 -8.3355 0.8862 30 1 3.3527 -8.3339 -0.8937 31 1 1.3342 -9.7748 -0.8941 32 1 1.3349 -9.7759 0.8858 33 1 3.5829 -10.8233 0.8836 34 1 3.5816 -10.8219 -0.8964 35 1 1.9924 -12.5362 -2.1400 36 1 0.7479 -14.7045 -1.3531 37 1 0.7482 -14.7070 1.3343 38 1 1.9983 -12.5433 2.1250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343521881.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:59 Heat of formation + Delta-G solvation = -57.950458 kcal Electronic energy + Delta-G solvation = -20121.359925 eV Core-core repulsion = 16770.376841 eV Total energy + Delta-G solvation = -3350.983084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93517 -41.00934 -39.92114 -36.31283 -35.91023 -35.27172 -33.39707 -32.31837 -29.62199 -29.60513 -27.44918 -26.14572 -23.29433 -21.40598 -21.31300 -21.27001 -20.77615 -20.07606 -18.78216 -17.94916 -17.19923 -17.10064 -16.99703 -16.29889 -16.20039 -15.66477 -15.47700 -15.23879 -14.82080 -14.47858 -14.15683 -13.90411 -13.67563 -13.56216 -13.24586 -12.97309 -12.92261 -12.90751 -12.72271 -12.57975 -12.47183 -12.13479 -11.79012 -11.58338 -11.03173 -10.57792 -10.20779 -10.09658 -9.47400 -9.01685 -8.52588 -6.03067 1.35453 1.41314 1.42468 1.54881 1.61477 1.89450 1.98108 2.18598 2.21939 2.35160 3.11992 3.14551 3.67637 3.82434 3.93512 4.17307 4.27064 4.30066 4.35926 4.41506 4.43634 4.44655 4.57636 4.69553 4.74573 4.82094 5.02390 5.20723 5.31401 5.37343 5.43338 5.47811 5.90110 6.13583 6.38350 6.44359 6.54962 6.58931 7.01710 7.19653 7.42792 7.92105 8.64246 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.066518 B = 0.002218 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.840268 B =12621.677788 C =12831.515785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.708 5.708 14 C 0.507 3.493 15 O -0.589 6.589 16 C -0.125 4.125 17 C -0.110 4.110 18 C 0.106 3.894 19 N -0.450 5.450 20 C -0.025 4.025 21 C -0.229 4.229 22 C -0.229 4.229 23 C -0.025 4.025 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.416 0.584 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.178 0.822 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -20.908 -0.015 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.363 5.363 14 C 0.296 3.704 15 O -0.470 6.470 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.015 4.015 19 N -0.125 5.125 20 C -0.156 4.156 21 C -0.253 4.253 22 C -0.253 4.253 23 C -0.155 4.155 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.255 0.745 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.195 0.805 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.557 -20.546 -0.010 21.284 hybrid contribution -0.291 1.059 -0.008 1.098 sum 5.266 -19.487 -0.018 20.186 Atomic orbital electron populations 1.69681 1.07045 1.29660 1.49283 1.26160 0.96555 1.02790 0.95792 0.84851 0.77917 0.76398 0.78719 1.19547 1.19733 1.19344 1.19743 0.92998 0.83517 1.50378 0.89443 1.41875 1.09599 1.04719 1.63413 1.20437 0.88149 0.85909 0.83537 1.90467 1.15058 1.87549 1.58031 1.20742 0.91927 0.84269 1.03906 1.45791 1.11352 1.04653 1.74478 1.21447 0.90056 0.84221 0.74677 1.90699 1.19080 1.85340 1.51892 1.21589 0.97394 0.89835 1.07722 1.21576 0.97927 0.92458 1.02961 1.22059 0.93484 0.79280 1.06691 1.44362 1.43693 1.18592 1.05883 1.22238 1.05289 0.95398 0.92626 1.21190 1.07878 1.00619 0.95629 1.21187 1.07890 1.00624 0.95618 1.22236 1.05267 0.95388 0.92654 0.91071 0.76774 0.89170 0.89162 0.74542 0.85544 0.85540 0.92468 0.92457 0.86875 0.86882 0.80499 0.84228 0.84230 0.80496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.38 13.05 21.66 0.28 -48.10 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.31 9.68 84.04 0.81 -17.50 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.77 5.29 -306.99 -1.62 -29.39 16 10 C 0.43 19.42 7.85 87.66 0.69 20.11 16 11 O -0.62 -31.08 15.24 -3.07 -0.05 -31.13 16 12 C 0.12 4.21 6.15 85.63 0.53 4.74 16 13 N -0.71 -20.95 5.53 -466.78 -2.58 -23.53 16 14 C 0.51 13.60 7.83 87.66 0.69 14.29 16 15 O -0.59 -20.72 15.98 -3.05 -0.05 -20.77 16 16 C -0.13 -1.85 5.70 29.85 0.17 -1.68 16 17 C -0.11 -1.80 4.83 30.59 0.15 -1.65 16 18 C 0.11 1.15 6.09 86.38 0.53 1.68 16 19 N -0.45 -7.63 2.75 -524.48 -1.44 -9.07 16 20 C -0.03 -0.46 11.43 83.21 0.95 0.49 16 21 C -0.23 -4.57 10.86 22.14 0.24 -4.33 16 22 C -0.23 -4.57 10.86 22.14 0.24 -4.33 16 23 C -0.03 -0.46 11.43 83.21 0.95 0.49 16 24 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.40 19.05 7.90 -92.71 -0.73 18.31 16 26 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 27 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.42 11.69 7.44 -92.71 -0.69 11.00 16 29 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.18 8.10 -2.38 -0.02 1.16 16 32 H 0.06 1.18 8.10 -2.39 -0.02 1.17 16 33 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -70.75 335.01 2.64 -68.11 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.34 Total: 38.52 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.41 Total: 12.13 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.36 Total: -110.08 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.10 Total: -51.90 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -70.75 2.64 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521881.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.156 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds