Wall clock time and date at job start Wed Apr 15 2020 11:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46938 * 121.95588 * 3 2 1 5 5 C 1.37097 * 120.00036 * 96.89417 * 4 3 2 6 6 H 1.07999 * 120.00007 * 157.10122 * 5 4 3 7 7 C 1.38950 * 120.00091 * 336.82525 * 5 4 3 8 8 N 1.31411 * 119.99913 * 350.76184 * 7 5 4 9 9 Si 1.86801 * 120.00034 * 170.76100 * 7 5 4 10 10 H 1.48494 * 109.46879 * 60.00370 * 9 7 5 11 11 H 1.48502 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47411 * 300.00041 * 9 7 5 13 13 C 1.34773 * 119.99784 * 276.89647 * 4 3 2 14 14 O 1.21293 * 120.00048 * 184.56313 * 13 4 3 15 15 C 1.50703 * 119.99968 * 4.55736 * 13 4 3 16 16 H 1.08997 * 109.47004 * 29.86552 * 15 13 4 17 17 C 1.53003 * 109.46669 * 149.86562 * 15 13 4 18 18 C 1.53002 * 109.46826 * 180.02562 * 17 15 13 19 19 C 1.53005 * 109.47080 * 299.99635 * 18 17 15 20 20 C 1.53003 * 109.46682 * 60.00246 * 19 18 17 21 21 H 1.09000 * 109.46895 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47441 * 60.00110 * 20 19 18 23 23 N 1.34779 * 120.00041 * 59.99848 * 22 20 19 24 24 O 1.21276 * 120.00110 * 239.99836 * 22 20 19 25 25 C 1.52997 * 109.47080 * 269.86228 * 15 13 4 26 26 H 1.08999 * 109.47514 * 1.95331 * 3 2 1 27 27 H 1.09006 * 109.46625 * 241.95235 * 3 2 1 28 28 H 0.97005 * 119.99908 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47206 * 299.99811 * 17 15 13 30 30 H 1.08997 * 109.47415 * 60.00242 * 17 15 13 31 31 H 1.08992 * 109.47068 * 179.97438 * 18 17 15 32 32 H 1.08997 * 109.47539 * 59.99581 * 18 17 15 33 33 H 1.08997 * 109.46890 * 300.00342 * 19 18 17 34 34 H 1.08996 * 109.46954 * 179.97438 * 19 18 17 35 35 H 0.97005 * 119.99722 * 359.97438 * 23 22 20 36 36 H 0.96996 * 119.99845 * 180.02562 * 23 22 20 37 37 H 1.08997 * 109.47467 * 300.00041 * 25 15 13 38 38 H 1.09001 * 109.46987 * 60.00482 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7319 -1.1719 5 6 3.4583 2.0491 -1.0561 6 1 4.1416 2.4859 -1.7693 7 6 2.9418 2.8236 -0.0245 8 7 1.9733 2.3531 0.7288 9 14 3.6243 4.5335 0.2914 10 1 3.4337 5.3738 -0.9180 11 1 2.9085 5.1480 1.4383 12 1 5.0727 4.4383 0.6048 13 6 3.1887 0.1098 -2.3639 14 8 3.6698 0.6893 -3.3146 15 6 2.6948 -1.3059 -2.5153 16 1 1.8728 -1.4802 -1.8211 17 6 2.2069 -1.5251 -3.9488 18 6 1.7049 -2.9622 -4.1025 19 6 2.8448 -3.9361 -3.7972 20 6 3.3327 -3.7168 -2.3637 21 1 4.1451 -4.4102 -2.1464 22 6 2.1961 -3.9572 -1.4039 23 7 1.5928 -5.1617 -1.3618 24 8 1.8241 -3.0668 -0.6693 25 6 3.8351 -2.2793 -2.2103 26 1 2.9719 -1.0262 -0.0350 27 1 2.9711 0.4841 0.9070 28 1 1.6130 2.8937 1.4492 29 1 1.3945 -0.8317 -4.1662 30 1 3.0289 -1.3509 -4.6431 31 1 1.3569 -3.1183 -5.1235 32 1 0.8828 -3.1361 -3.4083 33 1 3.6669 -3.7622 -4.4915 34 1 2.4870 -4.9599 -3.9063 35 1 1.8901 -5.8738 -1.9497 36 1 0.8610 -5.3163 -0.7443 37 1 4.6571 -2.1051 -2.9045 38 1 4.1827 -2.1231 -1.1890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345665210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:08 Heat of formation + Delta-G solvation = -77.408894 kcal Electronic energy + Delta-G solvation = -23133.741296 eV Core-core repulsion = 19781.914430 eV Total energy + Delta-G solvation = -3351.826865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71456 -40.24944 -37.92292 -37.31569 -36.08281 -34.67443 -33.71763 -31.85205 -31.69839 -29.12336 -26.90314 -24.76532 -24.13112 -22.45157 -20.70730 -20.13258 -19.68095 -18.38929 -17.87278 -17.75119 -17.19839 -16.85485 -16.28389 -15.74013 -15.66913 -15.29596 -14.96213 -14.66452 -14.51947 -14.41768 -13.83164 -13.64201 -13.34266 -13.10817 -13.04453 -13.00599 -12.92734 -12.87199 -12.37159 -12.15594 -12.10398 -11.99621 -11.69384 -11.47356 -11.10448 -11.03832 -10.52610 -10.42440 -10.14488 -9.87608 -8.34938 -6.02779 1.41387 1.43810 1.54834 1.84674 1.88402 2.08261 2.31906 2.38542 2.78382 3.03992 3.14415 3.65076 3.72239 3.85759 3.90106 4.14612 4.25620 4.28618 4.47250 4.53192 4.59137 4.65242 4.73232 4.85635 4.92918 5.06363 5.12772 5.19539 5.26224 5.30378 5.39830 5.44900 5.53456 6.07153 6.09739 6.42107 6.67260 7.07541 7.11903 7.36811 7.58448 7.95035 8.66973 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025163 B = 0.006184 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.475546 B = 4526.555508 C = 5098.233664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C 0.274 3.726 3 C 0.233 3.767 4 N -0.459 5.459 5 C -0.339 4.339 6 H 0.085 0.915 7 C -0.004 4.004 8 N -0.905 5.905 9 Si 0.996 3.004 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.258 1.258 13 C 0.457 3.543 14 O -0.617 6.617 15 C -0.112 4.112 16 H 0.098 0.902 17 C -0.099 4.099 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.100 4.100 21 H 0.141 0.859 22 C 0.512 3.488 23 N -0.839 5.839 24 O -0.577 6.577 25 C -0.087 4.087 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.273 0.727 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.417 0.583 36 H 0.402 0.598 37 H 0.080 0.920 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -19.374 -4.122 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.043 4.043 3 C 0.107 3.893 4 N -0.179 5.179 5 C -0.467 4.467 6 H 0.103 0.897 7 C -0.205 4.205 8 N -0.545 5.545 9 Si 0.820 3.180 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.182 1.182 13 C 0.247 3.753 14 O -0.503 6.503 15 C -0.133 4.133 16 H 0.116 0.884 17 C -0.137 4.137 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.121 4.121 21 H 0.159 0.841 22 C 0.298 3.702 23 N -0.403 5.403 24 O -0.456 6.456 25 C -0.126 4.126 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.248 0.752 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.850 -18.344 -4.022 18.994 hybrid contribution 0.015 1.246 0.410 1.312 sum 2.865 -17.098 -3.611 17.708 Atomic orbital electron populations 1.80785 1.14699 1.14035 1.10424 1.29509 0.95660 0.88188 0.90923 1.18905 0.80533 0.97604 0.92294 1.43797 1.56794 1.10573 1.06746 1.19705 1.26492 0.86352 1.14111 0.89742 1.26096 0.94977 1.03238 0.96153 1.69871 1.24519 1.39574 1.20505 0.84946 0.78902 0.76809 0.77382 1.20719 1.20285 1.18236 1.21261 0.81982 0.90264 0.81770 1.90455 1.50275 1.69849 1.39686 1.21552 1.01034 0.90762 0.99989 0.88415 1.21341 0.99898 0.97733 0.94748 1.21566 0.98415 0.92973 1.02327 1.21598 0.98574 1.00205 0.93589 1.21418 0.97269 0.97781 0.95614 0.84109 1.21023 0.83888 0.82276 0.83053 1.43720 1.38710 1.13690 1.44135 1.90733 1.66156 1.44306 1.44431 1.21308 0.96208 0.92718 1.02318 0.86526 0.86229 0.91694 0.95560 0.91315 0.89631 0.93562 0.89014 0.87647 0.75161 0.76714 0.90120 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -28.07 18.54 20.01 0.37 -27.70 16 2 C 0.27 14.10 12.21 89.44 1.09 15.19 16 3 C 0.23 10.94 4.78 84.57 0.40 11.34 16 4 N -0.46 -24.01 2.60 -645.41 -1.68 -25.69 16 5 C -0.34 -19.08 9.31 84.04 0.78 -18.29 16 6 H 0.08 4.98 7.37 -2.91 -0.02 4.95 16 7 C 0.00 -0.23 5.12 84.93 0.43 0.21 16 8 N -0.91 -49.27 9.08 21.66 0.20 -49.08 16 9 Si 1.00 43.00 29.56 68.60 2.03 45.03 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 C 0.46 22.83 6.61 87.66 0.58 23.41 16 14 O -0.62 -34.76 15.86 -3.07 -0.05 -34.81 16 15 C -0.11 -4.30 1.40 -11.54 -0.02 -4.31 16 16 H 0.10 4.09 3.30 -2.39 -0.01 4.09 16 17 C -0.10 -3.39 4.80 30.60 0.15 -3.25 16 18 C -0.12 -2.64 5.70 30.60 0.17 -2.47 16 19 C -0.10 -1.48 5.36 30.60 0.16 -1.32 16 20 C -0.10 -1.80 3.01 -11.52 -0.03 -1.83 16 21 H 0.14 1.43 8.14 -2.39 -0.02 1.42 16 22 C 0.51 11.35 5.91 87.66 0.52 11.87 16 23 N -0.84 -10.66 8.77 -173.54 -1.52 -12.18 16 24 O -0.58 -19.28 13.28 -3.02 -0.04 -19.32 16 25 C -0.09 -2.48 4.21 30.61 0.13 -2.35 16 26 H 0.12 4.75 4.60 -2.39 -0.01 4.74 16 27 H 0.12 5.74 6.40 -2.38 -0.02 5.72 16 28 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 2.36 7.85 -2.39 -0.02 2.34 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.19 7.22 -2.39 -0.02 1.17 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 0.72 7.56 -2.39 -0.02 0.71 16 35 H 0.42 1.94 8.25 -92.70 -0.76 1.18 16 36 H 0.40 5.17 8.93 -92.71 -0.83 4.34 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.07 1.95 6.84 -2.39 -0.02 1.93 16 Total: -1.00 -79.09 304.77 3.22 -75.87 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.47 Total: 19.70 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 4.37 Total: 28.19 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -2.63 Total: -114.65 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.09 Total: -54.14 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -79.09 3.22 -75.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345665210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.537 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds