Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47273 * 270.00121 * 3 2 1 5 5 H 1.48502 * 109.47154 * 30.00031 * 3 2 1 6 6 H 1.48496 * 109.47231 * 150.00375 * 3 2 1 7 7 C 1.37870 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00355 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.47413 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00518 * 84.31098 * 10 9 7 12 12 C 1.50698 * 109.46981 * 89.99584 * 11 10 9 13 13 C 1.38675 * 120.41687 * 90.00754 * 12 11 10 14 14 C 1.38629 * 118.42506 * 179.97438 * 13 12 11 15 15 C 1.38226 * 119.15817 * 0.25177 * 14 13 12 16 16 N 1.31857 * 120.76206 * 359.49793 * 15 14 13 17 17 C 1.31885 * 121.72559 * 0.49228 * 16 15 14 18 18 C 1.34778 * 119.99777 * 264.31287 * 10 9 7 19 19 O 1.21285 * 119.99876 * 184.31455 * 18 10 9 20 20 C 1.50701 * 120.00359 * 4.31422 * 18 10 9 21 21 H 1.09002 * 109.46580 * 47.14015 * 20 18 10 22 22 O 1.42898 * 109.47481 * 167.14000 * 20 18 10 23 23 C 1.52994 * 109.47055 * 287.14152 * 20 18 10 24 24 N 1.46899 * 109.47300 * 173.47250 * 23 20 18 25 25 H 0.96998 * 120.00571 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46528 * 60.00436 * 9 7 2 27 27 H 1.08994 * 109.47062 * 300.00887 * 9 7 2 28 28 H 1.09000 * 109.46889 * 330.00441 * 11 10 9 29 29 H 1.08992 * 109.47571 * 210.00203 * 11 10 9 30 30 H 1.08003 * 120.79139 * 359.95086 * 13 12 11 31 31 H 1.08000 * 120.42290 * 179.97438 * 14 13 12 32 32 H 1.07997 * 119.61992 * 179.75107 * 15 14 13 33 33 H 1.08004 * 119.61715 * 179.75161 * 17 16 15 34 34 H 0.96701 * 113.99580 * 59.99665 * 22 20 18 35 35 H 1.08997 * 109.47461 * 293.47375 * 23 20 18 36 36 H 1.09003 * 109.47202 * 53.47332 * 23 20 18 37 37 H 1.00906 * 110.99803 * 56.04261 * 24 23 20 38 38 H 1.00895 * 111.00332 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7747 -4.0877 1.2618 12 6 1.8961 -5.1693 1.8356 13 6 2.1147 -6.4989 1.5079 14 6 1.2820 -7.4601 2.0598 15 6 0.2653 -7.0635 2.9081 16 7 0.0898 -5.7900 3.2013 17 6 0.8629 -4.8489 2.6952 18 6 2.5531 -4.1999 -1.1620 19 8 3.2797 -5.1710 -1.1557 20 6 2.0416 -3.6501 -2.4686 21 1 2.1739 -2.5683 -2.4841 22 8 2.7708 -4.2347 -3.5496 23 6 0.5559 -3.9845 -2.6159 24 7 0.0199 -3.3176 -3.8100 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8377 -3.2588 1.9669 29 1 3.7724 -4.4877 1.0812 30 1 2.9146 -6.7791 0.8384 31 1 1.4230 -8.5051 1.8263 32 1 -0.3903 -7.8057 3.3390 33 1 0.6860 -3.8157 2.9554 34 1 2.6985 -5.1978 -3.5974 35 1 0.4344 -5.0630 -2.7168 36 1 0.0165 -3.6390 -1.7339 37 1 0.5455 -3.5721 -4.6329 38 1 -0.9608 -3.5226 -3.9292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = -46.812074 kcal Electronic energy + Delta-G solvation = -22381.692217 eV Core-core repulsion = 19031.192129 eV Total energy + Delta-G solvation = -3350.500087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20298 -39.39192 -36.61290 -35.39971 -33.53401 -33.02738 -32.16007 -31.39315 -28.47504 -27.48470 -25.65972 -23.52032 -23.17391 -22.34797 -21.62631 -19.10729 -17.13774 -16.98161 -16.53616 -16.36011 -16.12432 -15.87211 -15.18610 -14.83633 -14.66883 -14.33315 -13.76221 -13.61185 -13.43802 -13.09954 -12.80739 -12.71283 -12.47694 -12.15183 -11.82311 -11.55556 -11.35233 -11.15591 -10.97465 -10.77678 -10.24595 -10.21802 -9.82077 -9.62385 -9.27003 -9.13677 -8.74635 -8.58479 -8.40223 -7.91357 -6.20533 -4.28570 1.25994 1.48397 3.08569 3.24273 3.31614 3.34124 3.65815 4.12484 4.32386 4.57185 4.63747 4.87348 4.99210 5.10094 5.14049 5.17586 5.22951 5.28378 5.38382 5.40940 5.60940 5.85019 5.94994 6.02212 6.12533 6.25789 6.31805 6.53225 6.62251 6.89821 7.10138 7.28386 7.36045 7.66295 7.71387 7.79639 7.98194 8.14432 8.16010 8.66197 8.82620 9.39736 10.86174 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.006989 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.819697 B = 4005.385806 C = 5198.961021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.221 3.779 10 N -0.583 5.583 11 C 0.159 3.841 12 C -0.145 4.145 13 C -0.056 4.056 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.115 3.885 18 C 0.491 3.509 19 O -0.569 6.569 20 C 0.095 3.905 21 H 0.147 0.853 22 O -0.543 6.543 23 C 0.035 3.965 24 N -0.836 5.836 25 H 0.266 0.734 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.371 0.629 35 H 0.023 0.977 36 H 0.102 0.898 37 H 0.341 0.659 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 -11.109 0.013 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.102 3.898 10 N -0.313 5.313 11 C 0.035 3.965 12 C -0.148 4.148 13 C -0.083 4.083 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.042 4.042 18 C 0.279 3.721 19 O -0.450 6.450 20 C 0.033 3.967 21 H 0.164 0.836 22 O -0.347 6.347 23 C -0.096 4.096 24 N -0.366 5.366 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.218 0.782 35 H 0.041 0.959 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.016 -9.913 0.848 9.949 hybrid contribution 0.642 -0.764 -0.713 1.226 sum 0.658 -10.677 0.135 10.698 Atomic orbital electron populations 1.69905 1.05966 1.27452 1.48865 1.24906 0.94837 0.99263 0.94425 0.86512 0.79757 0.82910 0.78406 1.20350 1.21093 1.19852 1.21408 0.93588 0.90286 1.53093 0.92003 1.19854 0.87705 0.82592 0.99608 1.48309 1.44679 1.34172 1.04163 1.20164 0.95139 0.94633 0.86528 1.21424 0.99013 0.95803 0.98588 1.21673 0.98152 0.92320 0.96112 1.22105 0.97625 1.00507 0.99998 1.22702 0.95863 0.93080 0.95125 1.67715 1.27062 1.01437 1.23544 1.22835 0.89919 0.99051 0.92394 1.21335 0.80933 0.83192 0.86681 1.90572 1.39298 1.27502 1.87654 1.21990 0.89794 1.01101 0.83849 0.83620 1.86610 1.73884 1.25371 1.48799 1.22550 0.95468 0.95375 0.96233 1.58506 1.07094 1.65419 1.05615 0.92417 0.92534 0.94584 0.88741 0.89936 0.84471 0.85296 0.83294 0.82408 0.78162 0.95935 0.88032 0.84574 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 13.29 55.43 0.74 -22.97 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -13.59 9.20 -34.44 -0.32 -13.91 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.22 4.93 4.64 -5.19 -0.02 4.90 16 10 N -0.58 -11.42 2.44 -176.44 -0.43 -11.85 16 11 C 0.16 2.77 5.54 -5.20 -0.03 2.74 16 12 C -0.15 -2.34 5.48 -104.48 -0.57 -2.92 16 13 C -0.06 -0.84 9.77 -39.28 -0.38 -1.22 16 14 C -0.18 -2.34 10.11 -39.44 -0.40 -2.74 16 15 C 0.09 1.20 11.18 -17.55 -0.20 1.01 16 16 N -0.49 -7.87 10.36 -13.25 -0.14 -8.01 16 17 C 0.12 1.88 10.86 -17.55 -0.19 1.69 16 18 C 0.49 9.62 7.01 -10.98 -0.08 9.55 16 19 O -0.57 -11.64 15.29 -14.02 -0.21 -11.86 16 20 C 0.09 1.73 2.79 -27.89 -0.08 1.66 16 21 H 0.15 3.07 7.54 -51.93 -0.39 2.68 16 22 O -0.54 -9.21 12.64 -54.80 -0.69 -9.90 16 23 C 0.04 0.57 6.03 -3.83 -0.02 0.55 16 24 N -0.84 -12.44 9.62 -10.37 -0.10 -12.54 16 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.06 1.30 4.04 -51.93 -0.21 1.09 16 27 H 0.04 0.85 8.11 -51.93 -0.42 0.42 16 28 H 0.09 1.60 8.02 -51.93 -0.42 1.19 16 29 H 0.08 1.42 7.44 -51.93 -0.39 1.03 16 30 H 0.14 2.06 7.51 -52.48 -0.39 1.67 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.16 2.54 8.06 -52.48 -0.42 2.11 16 34 H 0.37 5.20 8.71 45.56 0.40 5.60 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 1.86 5.45 -51.93 -0.28 1.57 16 37 H 0.34 4.59 8.61 -39.29 -0.34 4.25 16 38 H 0.34 4.30 9.08 -39.29 -0.36 3.94 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -29.17 325.50 -7.38 -36.55 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -4.04 Total: 17.41 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.39 Total: 3.00 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.07 Total: -55.37 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.91 Total: -21.76 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.17 -7.38 -36.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.264 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds