Wall clock time and date at job start Wed Apr 15 2020 11:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47084 * 270.00154 * 3 2 1 5 5 H 1.48494 * 109.47230 * 30.00186 * 3 2 1 6 6 H 1.48504 * 109.46831 * 150.00319 * 3 2 1 7 7 C 1.38813 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99900 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00138 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00068 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47266 * 325.00155 * 10 9 7 12 12 C 1.53000 * 109.46893 * 85.00244 * 10 9 7 13 13 O 1.42909 * 109.47039 * 64.99899 * 12 10 9 14 14 C 1.53002 * 109.47388 * 205.00062 * 10 9 7 15 15 N 1.46504 * 109.46853 * 54.99982 * 14 10 9 16 16 C 1.34774 * 119.99752 * 179.97438 * 15 14 10 17 17 O 1.21282 * 120.00557 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99826 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47336 * 180.02562 * 18 16 15 20 20 C 1.38675 * 120.41529 * 89.99890 * 19 18 16 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 0.96998 * 119.99797 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00059 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47567 * 184.99983 * 12 10 9 28 28 H 1.08998 * 109.46861 * 305.00507 * 12 10 9 29 29 H 0.96694 * 113.99689 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.47223 * 295.00525 * 14 10 9 31 31 H 1.08993 * 109.47000 * 175.00046 * 14 10 9 32 32 H 0.96993 * 120.00109 * 0.02562 * 15 14 10 33 33 H 1.09008 * 109.47420 * 60.00074 * 18 16 15 34 34 H 1.08998 * 109.47517 * 300.00013 * 18 16 15 35 35 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 36 36 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 38 38 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5650 -3.2063 0.5887 12 6 4.2578 -2.9756 -1.4380 13 8 5.0737 -2.0679 -2.1814 14 6 5.4996 -2.2588 0.6080 15 7 5.3625 -1.6634 1.9395 16 6 6.4607 -1.3861 2.6700 17 8 7.5624 -1.6290 2.2249 18 6 6.3197 -0.7742 4.0399 19 6 7.6863 -0.5651 4.6398 20 6 8.3680 0.6251 4.4358 21 6 9.6223 0.7734 5.0073 22 6 10.1502 -0.2647 5.7517 23 7 9.4712 -1.3811 5.9288 24 6 8.2756 -1.5568 5.4005 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3620 -0.0007 27 1 4.7235 -3.9610 -1.4316 28 1 3.2733 -3.0420 -1.9013 29 1 5.2087 -2.3254 -3.1036 30 1 6.0786 -1.5915 -0.0305 31 1 6.0110 -3.2178 0.6897 32 1 4.4815 -1.4694 2.2957 33 1 5.7405 -1.4416 4.6782 34 1 5.8085 0.1850 3.9586 35 1 7.9323 1.4176 3.8455 36 1 10.1818 1.6867 4.8688 37 1 11.1285 -0.1588 6.1969 38 1 7.7512 -2.4866 5.5641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734365871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:41 Heat of formation + Delta-G solvation = -39.266979 kcal Electronic energy + Delta-G solvation = -21269.938626 eV Core-core repulsion = 17919.765719 eV Total energy + Delta-G solvation = -3350.172908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45395 -39.22337 -37.29921 -35.07424 -33.62185 -33.59474 -32.03256 -31.55184 -29.22952 -27.97458 -25.15358 -23.66895 -23.37147 -22.42483 -20.29208 -19.98622 -18.01810 -17.21869 -16.95075 -16.75801 -16.56417 -16.04259 -15.20780 -15.02527 -14.53756 -14.31858 -13.85156 -13.65979 -13.41335 -13.33839 -13.14773 -13.08229 -12.85490 -12.53889 -12.14899 -11.74966 -11.53255 -11.04552 -10.91352 -10.75484 -10.18226 -9.98767 -9.73945 -9.70150 -9.56979 -9.50365 -9.07909 -9.01869 -8.75401 -7.40746 -5.88354 -3.24982 0.99206 1.19645 2.80304 3.30025 3.36506 3.37425 3.41073 3.81933 4.30301 4.50050 4.57052 4.68121 4.77052 4.87823 4.90112 5.04941 5.16585 5.21488 5.32878 5.36052 5.40628 5.55360 5.66311 5.77772 5.87369 5.89050 5.98925 6.14305 6.18119 6.34099 6.56603 6.58727 6.74758 7.77765 7.85170 7.86383 8.06837 8.30565 8.43327 9.08375 9.80882 10.00996 11.29304 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.004242 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.000746 B = 6598.866095 C = 7381.130982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.075 0.925 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.116 3.884 15 N -0.717 5.717 16 C 0.511 3.489 17 O -0.545 6.545 18 C -0.103 4.103 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.092 3.908 23 N -0.486 5.486 24 C 0.112 3.888 25 H 0.261 0.739 26 H 0.366 0.634 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.367 0.633 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.626 -1.856 7.781 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.061 3.939 11 H 0.092 0.908 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.423 6.423 18 C -0.143 4.143 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.192 4.192 22 C -0.065 4.065 23 N -0.194 5.194 24 C -0.045 4.045 25 H 0.071 0.929 26 H 0.199 0.801 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.212 0.788 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.246 0.754 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.520 -2.453 8.552 17.889 hybrid contribution -0.419 1.719 -1.156 2.114 sum 15.101 -0.734 7.395 16.830 Atomic orbital electron populations 1.69697 1.05138 1.26000 1.56872 1.24646 0.95151 0.97216 1.01590 0.86558 0.78986 0.84902 0.78024 1.21040 1.21824 1.20367 1.19049 0.80411 0.94723 1.43935 0.89143 1.42726 1.03870 1.01799 1.89787 1.20572 0.90479 0.90574 0.92274 0.90754 1.22997 0.93860 0.90434 0.94937 1.86516 1.72390 1.52038 1.25968 1.21593 0.98296 0.98338 0.82634 1.46031 1.09445 1.63275 1.18114 1.20380 0.84624 0.78685 0.86675 1.90704 1.25886 1.53346 1.72393 1.20638 0.95185 1.03918 0.94604 1.20330 0.96742 0.95335 0.98769 1.21482 0.94241 0.96987 0.96143 1.22096 0.96576 1.00862 0.99644 1.22721 0.99238 0.88892 0.95677 1.67672 1.07527 1.23448 1.20765 1.22588 0.91167 0.97858 0.92915 0.92941 0.80094 0.95090 0.92748 0.78835 0.90716 0.91725 0.75428 0.87420 0.87555 0.84954 0.84861 0.82954 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.97 55.49 0.78 -27.08 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.40 27.74 -169.99 -4.71 16.68 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.54 10.41 -15.06 -0.16 -6.70 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 9 N -0.74 -16.08 4.31 -53.42 -0.23 -16.31 16 10 C 0.17 3.02 2.84 -67.93 -0.19 2.82 16 11 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 12 C 0.06 0.95 6.86 37.16 0.25 1.21 16 13 O -0.57 -9.29 12.64 -35.23 -0.45 -9.74 16 14 C 0.12 1.89 5.12 -4.04 -0.02 1.87 16 15 N -0.72 -10.89 5.39 -60.29 -0.32 -11.22 16 16 C 0.51 7.68 7.82 -10.99 -0.09 7.59 16 17 O -0.55 -10.15 16.03 5.56 0.09 -10.06 16 18 C -0.10 -1.15 5.86 -29.03 -0.17 -1.32 16 19 C -0.11 -1.33 4.39 -104.48 -0.46 -1.79 16 20 C -0.06 -0.72 9.86 -39.28 -0.39 -1.10 16 21 C -0.17 -1.76 10.11 -39.44 -0.40 -2.16 16 22 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 23 N -0.49 -6.34 10.36 -13.25 -0.14 -6.47 16 24 C 0.11 1.39 10.86 -17.55 -0.19 1.20 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.37 8.26 5.66 -40.82 -0.23 8.03 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.37 4.26 9.12 45.56 0.42 4.68 16 30 H 0.07 1.38 7.39 -51.93 -0.38 0.99 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.41 6.04 8.14 -40.82 -0.33 5.71 16 33 H 0.11 0.93 8.10 -51.92 -0.42 0.51 16 34 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -34.31 329.59 -6.46 -40.78 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -4.34 Total: 15.84 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.10 Total: 2.62 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.08 Total: -61.08 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.36 Total: -19.80 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.31 -6.46 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734365871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.509 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds