Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47084 * 270.00154 * 3 2 1 5 5 H 1.48494 * 109.47230 * 30.00186 * 3 2 1 6 6 H 1.48504 * 109.46831 * 150.00319 * 3 2 1 7 7 C 1.38813 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99900 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00138 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00068 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47266 * 325.00155 * 10 9 7 12 12 C 1.53000 * 109.46893 * 85.00244 * 10 9 7 13 13 O 1.42909 * 109.47039 * 64.99899 * 12 10 9 14 14 C 1.53002 * 109.47388 * 205.00062 * 10 9 7 15 15 N 1.46504 * 109.46853 * 54.99982 * 14 10 9 16 16 C 1.34774 * 119.99752 * 179.97438 * 15 14 10 17 17 O 1.21282 * 120.00557 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99826 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47336 * 180.02562 * 18 16 15 20 20 C 1.38675 * 120.41529 * 89.99890 * 19 18 16 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 0.96998 * 119.99797 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00059 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47567 * 184.99983 * 12 10 9 28 28 H 1.08998 * 109.46861 * 305.00507 * 12 10 9 29 29 H 0.96694 * 113.99689 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.47223 * 295.00525 * 14 10 9 31 31 H 1.08993 * 109.47000 * 175.00046 * 14 10 9 32 32 H 0.96993 * 120.00109 * 0.02562 * 15 14 10 33 33 H 1.09008 * 109.47420 * 60.00074 * 18 16 15 34 34 H 1.08998 * 109.47517 * 300.00013 * 18 16 15 35 35 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 36 36 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 38 38 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5650 -3.2063 0.5887 12 6 4.2578 -2.9756 -1.4380 13 8 5.0737 -2.0679 -2.1814 14 6 5.4996 -2.2588 0.6080 15 7 5.3625 -1.6634 1.9395 16 6 6.4607 -1.3861 2.6700 17 8 7.5624 -1.6290 2.2249 18 6 6.3197 -0.7742 4.0399 19 6 7.6863 -0.5651 4.6398 20 6 8.3680 0.6251 4.4358 21 6 9.6223 0.7734 5.0073 22 6 10.1502 -0.2647 5.7517 23 7 9.4712 -1.3811 5.9288 24 6 8.2756 -1.5568 5.4005 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3620 -0.0007 27 1 4.7235 -3.9610 -1.4316 28 1 3.2733 -3.0420 -1.9013 29 1 5.2087 -2.3254 -3.1036 30 1 6.0786 -1.5915 -0.0305 31 1 6.0110 -3.2178 0.6897 32 1 4.4815 -1.4694 2.2957 33 1 5.7405 -1.4416 4.6782 34 1 5.8085 0.1850 3.9586 35 1 7.9323 1.4176 3.8455 36 1 10.1818 1.6867 4.8688 37 1 11.1285 -0.1588 6.1969 38 1 7.7512 -2.4866 5.5641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734365871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = -67.215081 kcal Electronic energy + Delta-G solvation = -21271.150547 eV Core-core repulsion = 17919.765719 eV Total energy + Delta-G solvation = -3351.384828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38426 -40.35542 -38.69054 -36.45870 -35.21160 -34.54370 -33.38221 -32.81607 -30.77631 -29.02702 -26.37665 -25.25931 -24.50506 -23.36002 -21.70641 -21.22055 -19.84762 -18.30116 -18.12623 -17.89736 -17.46537 -17.29025 -16.61950 -16.11853 -16.01798 -15.59101 -15.04738 -14.97634 -14.72995 -14.57692 -14.29239 -14.22306 -14.13433 -13.95181 -13.31837 -13.07466 -12.80644 -12.62059 -12.45600 -12.31179 -11.87765 -11.77077 -11.15171 -10.99149 -10.76229 -10.67734 -10.41945 -10.02776 -9.90213 -9.32648 -7.99962 -5.32758 0.15858 0.35503 1.38186 1.43518 1.48418 1.65247 2.27717 2.49825 2.92503 3.32070 3.46167 3.50320 3.70048 3.73244 3.91642 3.92841 4.05430 4.09064 4.11466 4.39158 4.48206 4.53018 4.57224 4.61130 4.75126 4.82717 4.88782 4.97915 5.17745 5.18426 5.31921 5.49478 5.78819 5.79427 6.23381 6.59437 7.01546 7.02493 7.09660 7.26205 7.84136 8.03454 9.20944 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.004242 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.000746 B = 6598.866095 C = 7381.130982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.054 4.054 3 Si 0.946 3.054 4 H -0.293 1.293 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.223 4.223 8 H 0.067 0.933 9 N -0.739 5.739 10 C 0.166 3.834 11 H 0.082 0.918 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.128 3.872 15 N -0.716 5.716 16 C 0.511 3.489 17 O -0.583 6.583 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.078 4.078 21 C -0.170 4.170 22 C 0.081 3.919 23 N -0.513 5.513 24 C 0.095 3.905 25 H 0.256 0.744 26 H 0.364 0.636 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.388 0.612 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.413 0.587 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.422 -1.518 8.339 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.246 4.246 3 Si 0.775 3.225 4 H -0.220 1.220 5 H -0.224 1.224 6 H -0.177 1.177 7 C -0.353 4.353 8 H 0.085 0.915 9 N -0.382 5.382 10 C 0.058 3.942 11 H 0.100 0.900 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.368 5.368 16 C 0.299 3.701 17 O -0.464 6.464 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.104 4.104 21 C -0.190 4.190 22 C -0.075 4.075 23 N -0.221 5.221 24 C -0.062 4.062 25 H 0.065 0.935 26 H 0.197 0.803 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.236 0.764 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.250 0.750 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.196 0.804 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.361 -2.154 9.107 19.723 hybrid contribution -0.894 1.503 -1.364 2.217 sum 16.467 -0.651 7.743 18.208 Atomic orbital electron populations 1.69852 1.06939 1.26442 1.59851 1.25304 0.95783 1.00553 1.02976 0.85553 0.78713 0.80766 0.77462 1.22021 1.22434 1.17689 1.19016 0.82160 0.93500 1.40666 0.91525 1.42685 1.02352 1.03379 1.89832 1.20812 0.90836 0.88885 0.93694 0.90015 1.22824 0.93432 0.91995 0.93439 1.86459 1.72166 1.52670 1.27787 1.21382 0.96865 0.98585 0.82862 1.46040 1.09812 1.63202 1.17724 1.20987 0.83706 0.77757 0.87646 1.90687 1.27236 1.54974 1.73492 1.20666 0.95441 1.04990 0.92424 1.20463 0.97264 0.95664 0.99077 1.21810 0.94912 0.97241 0.96442 1.22439 0.96279 1.01714 0.98554 1.23247 1.00158 0.88501 0.95602 1.67681 1.08095 1.24696 1.21673 1.22841 0.91418 0.98562 0.93373 0.93475 0.80330 0.91442 0.94705 0.76400 0.92618 0.90405 0.75034 0.84795 0.85896 0.83831 0.82013 0.80372 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.77 13.97 21.65 0.30 -59.46 16 2 C -0.05 -3.00 5.50 84.86 0.47 -2.54 16 3 Si 0.95 43.95 27.74 68.60 1.90 45.85 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.25 -10.49 6.52 99.48 0.65 -9.85 16 7 C -0.22 -11.51 10.41 84.03 0.87 -10.63 16 8 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.74 -31.12 4.31 -322.93 -1.39 -32.51 16 10 C 0.17 5.55 2.84 44.99 0.13 5.67 16 11 H 0.08 2.63 8.08 -2.39 -0.02 2.61 16 12 C 0.06 1.93 6.86 71.98 0.49 2.43 16 13 O -0.58 -17.96 12.64 -148.98 -1.88 -19.85 16 14 C 0.13 3.91 5.12 86.38 0.44 4.36 16 15 N -0.72 -20.28 5.39 -463.06 -2.49 -22.78 16 16 C 0.51 14.40 7.82 87.66 0.69 15.08 16 17 O -0.58 -20.98 16.03 -3.03 -0.05 -21.03 16 18 C -0.10 -1.90 5.86 29.10 0.17 -1.73 16 19 C -0.12 -2.76 4.39 -19.77 -0.09 -2.85 16 20 C -0.08 -1.64 9.86 22.47 0.22 -1.42 16 21 C -0.17 -3.10 10.11 22.36 0.23 -2.87 16 22 C 0.08 1.63 11.18 84.68 0.95 2.57 16 23 N -0.51 -12.82 10.36 -195.85 -2.03 -14.85 16 24 C 0.09 2.25 10.86 84.67 0.92 3.17 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.36 15.68 5.66 -92.70 -0.52 15.15 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.39 8.14 9.12 -74.06 -0.68 7.47 16 30 H 0.06 1.96 7.39 -2.39 -0.02 1.94 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.41 11.25 8.14 -92.71 -0.75 10.50 16 33 H 0.13 1.95 8.10 -2.38 -0.02 1.93 16 34 H 0.12 2.07 8.09 -2.39 -0.02 2.05 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -74.17 329.59 -1.07 -75.24 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.91 Total: 38.16 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.49 Total: 11.23 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -5.61 Total: -129.61 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.93 Total: -40.87 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.85 kcal Total: -74.17 -1.07 -75.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734365871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.021 kcal (2) G-P(sol) polarization free energy of solvation -74.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds