Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99902 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.38678 * 120.41761 * 269.71986 * 19 18 16 21 21 C 1.38630 * 118.41923 * 179.78355 * 20 19 18 22 22 C 1.38227 * 119.15814 * 0.51128 * 21 20 19 23 23 N 1.31851 * 120.76602 * 359.73044 * 22 21 20 24 24 C 1.31883 * 121.72729 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 28 28 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 29 29 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 31 31 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 32 32 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 33 33 H 1.08997 * 109.47378 * 299.99789 * 18 16 15 34 34 H 1.09000 * 109.47199 * 60.00559 * 18 16 15 35 35 H 1.07996 * 120.78800 * 0.02875 * 20 19 18 36 36 H 1.07994 * 120.41608 * 180.22486 * 21 20 19 37 37 H 1.08001 * 119.61345 * 179.74727 * 22 21 20 38 38 H 1.08008 * 119.61885 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3863 -6.2286 2.2198 18 6 -0.4992 -4.7278 4.0377 19 6 -1.3598 -5.8086 4.6396 20 6 -2.7330 -5.8021 4.4458 21 6 -3.4844 -6.8188 5.0145 22 6 -2.8457 -7.7924 5.7594 23 7 -1.5382 -7.7640 5.9270 24 6 -0.7914 -6.8156 5.3960 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0015 27 1 2.9641 -3.2122 -1.9146 28 1 3.0368 -4.9285 -1.4486 29 1 1.3708 -4.5275 -3.1130 30 1 0.3130 -4.9200 -0.0361 31 1 1.7583 -5.6761 0.6765 32 1 1.0152 -3.4802 2.2898 33 1 0.3706 -4.5606 4.6729 34 1 -1.0750 -3.8056 3.9598 35 1 -3.2052 -5.0256 3.8623 36 1 -4.5557 -6.8472 4.8810 37 1 -3.4245 -8.5856 6.2092 38 1 0.2768 -6.8252 5.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734365873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -42.682563 kcal Electronic energy + Delta-G solvation = -21212.267391 eV Core-core repulsion = 17861.946373 eV Total energy + Delta-G solvation = -3350.321018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40838 -39.16786 -37.25136 -35.05865 -33.73721 -33.57482 -31.99420 -31.41563 -28.64202 -27.64827 -25.12417 -23.62644 -23.51038 -22.40235 -20.33667 -19.96917 -17.75889 -17.21117 -16.81843 -16.74655 -16.51850 -16.07746 -15.10275 -15.02129 -14.52222 -14.08241 -13.84829 -13.72568 -13.53521 -13.39548 -13.22581 -13.09744 -13.00446 -12.29002 -11.83636 -11.62848 -11.45492 -10.89492 -10.79538 -10.46952 -10.09820 -9.94052 -9.68606 -9.55024 -9.51470 -9.24019 -9.04670 -8.98124 -8.69311 -7.15344 -6.18882 -3.20543 1.03322 1.23978 2.85957 3.43271 3.45017 3.49460 3.63628 3.86409 4.34282 4.57049 4.61399 4.72933 4.82301 4.92779 4.94478 5.10325 5.25623 5.29967 5.41176 5.42296 5.49924 5.59517 5.70638 5.79800 5.91833 5.92546 6.03612 6.19173 6.24518 6.36720 6.61659 6.63025 6.80301 7.69276 7.83687 7.90063 8.09823 8.49003 8.67036 9.11375 9.98228 10.13720 11.28770 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.003858 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.182441 B = 7255.916255 C = 8096.393159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.340 4.340 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.059 3.941 13 O -0.562 6.562 14 C 0.118 3.882 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.547 6.547 18 C -0.102 4.102 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.091 3.909 23 N -0.486 5.486 24 C 0.111 3.889 25 H 0.257 0.743 26 H 0.371 0.629 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.365 0.635 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 -10.836 7.786 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.238 4.238 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.470 4.470 8 H 0.083 0.917 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.366 5.366 16 C 0.297 3.703 17 O -0.425 6.425 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.191 4.191 22 C -0.066 4.066 23 N -0.195 5.195 24 C -0.046 4.046 25 H 0.068 0.932 26 H 0.205 0.795 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.210 0.790 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.875 -10.416 8.546 13.502 hybrid contribution 0.006 -0.656 -1.164 1.337 sum -0.869 -11.073 7.382 13.336 Atomic orbital electron populations 1.70839 1.06069 1.28678 1.52741 1.25747 0.97002 1.00928 1.00125 0.83209 0.73871 0.75410 0.76237 1.22268 1.22232 1.21417 1.20049 0.91932 0.85704 1.49347 0.91739 1.42371 1.05049 1.00056 1.89270 1.20526 0.95001 0.86492 0.91943 0.91544 1.23019 0.86435 0.97369 0.95388 1.86546 1.32214 1.92026 1.25796 1.21552 0.99505 0.96956 0.82642 1.46005 1.50965 1.21832 1.17797 1.20377 0.78587 0.84647 0.86721 1.90701 1.56517 1.22727 1.72535 1.20624 1.00791 0.98336 0.94490 1.20333 0.94479 0.97586 0.98697 1.21500 0.93305 0.97901 0.96107 1.22100 1.01364 0.96067 0.99604 1.22714 0.90737 0.97405 0.95753 1.67661 1.06950 1.24082 1.20761 1.22575 0.99848 0.89207 0.93001 0.93162 0.79478 0.93244 0.95394 0.79015 0.90770 0.92063 0.75472 0.87603 0.87435 0.84850 0.84838 0.82972 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.83 13.70 55.49 0.76 -27.07 16 2 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 3 Si 1.08 24.74 29.92 -169.99 -5.09 19.66 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.34 -8.85 9.93 -15.06 -0.15 -9.00 16 8 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 9 N -0.72 -16.82 4.51 -53.43 -0.24 -17.06 16 10 C 0.17 3.21 2.84 -67.93 -0.19 3.02 16 11 H 0.07 1.20 8.08 -51.93 -0.42 0.79 16 12 C 0.06 1.02 6.86 37.16 0.25 1.28 16 13 O -0.56 -9.97 12.64 -35.23 -0.45 -10.42 16 14 C 0.12 2.06 5.12 -4.04 -0.02 2.04 16 15 N -0.71 -11.52 5.39 -60.29 -0.32 -11.84 16 16 C 0.51 8.10 7.82 -10.99 -0.09 8.01 16 17 O -0.55 -10.62 16.03 5.55 0.09 -10.53 16 18 C -0.10 -1.21 5.86 -29.03 -0.17 -1.38 16 19 C -0.11 -1.38 4.39 -104.48 -0.46 -1.84 16 20 C -0.06 -0.75 9.86 -39.27 -0.39 -1.14 16 21 C -0.17 -1.84 10.11 -39.44 -0.40 -2.24 16 22 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 23 N -0.49 -6.55 10.36 -13.25 -0.14 -6.69 16 24 C 0.11 1.43 10.86 -17.55 -0.19 1.24 16 25 H 0.26 7.60 6.77 -40.82 -0.28 7.32 16 26 H 0.37 9.32 6.63 -40.82 -0.27 9.05 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.36 4.67 9.12 45.56 0.42 5.08 16 30 H 0.07 1.47 7.39 -51.93 -0.38 1.09 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.41 6.52 8.14 -40.82 -0.33 6.18 16 33 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.11 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -34.23 331.00 -6.76 -41.00 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -4.27 Total: 18.33 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.09 Total: -0.36 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.06 Total: -62.66 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.36 Total: -20.95 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.09 Total: 19.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.23 -6.76 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734365873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.685 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds