Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21286 * 120.00177 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99902 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.38678 * 120.41761 * 269.71986 * 19 18 16 21 21 C 1.38630 * 118.41923 * 179.78355 * 20 19 18 22 22 C 1.38227 * 119.15814 * 0.51128 * 21 20 19 23 23 N 1.31851 * 120.76602 * 359.73044 * 22 21 20 24 24 C 1.31883 * 121.72729 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 28 28 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 29 29 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 31 31 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 32 32 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 33 33 H 1.08997 * 109.47378 * 299.99789 * 18 16 15 34 34 H 1.09000 * 109.47199 * 60.00559 * 18 16 15 35 35 H 1.07996 * 120.78800 * 0.02875 * 20 19 18 36 36 H 1.07994 * 120.41608 * 180.22486 * 21 20 19 37 37 H 1.08001 * 119.61345 * 179.74727 * 22 21 20 38 38 H 1.08008 * 119.61885 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3863 -6.2286 2.2198 18 6 -0.4992 -4.7278 4.0377 19 6 -1.3598 -5.8086 4.6396 20 6 -2.7330 -5.8021 4.4458 21 6 -3.4844 -6.8188 5.0145 22 6 -2.8457 -7.7924 5.7594 23 7 -1.5382 -7.7640 5.9270 24 6 -0.7914 -6.8156 5.3960 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0015 27 1 2.9641 -3.2122 -1.9146 28 1 3.0368 -4.9285 -1.4486 29 1 1.3708 -4.5275 -3.1130 30 1 0.3130 -4.9200 -0.0361 31 1 1.7583 -5.6761 0.6765 32 1 1.0152 -3.4802 2.2898 33 1 0.3706 -4.5606 4.6729 34 1 -1.0750 -3.8056 3.9598 35 1 -3.2052 -5.0256 3.8623 36 1 -4.5557 -6.8472 4.8810 37 1 -3.4245 -8.5856 6.2092 38 1 0.2768 -6.8252 5.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734365873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = -70.063920 kcal Electronic energy + Delta-G solvation = -21213.454736 eV Core-core repulsion = 17861.946373 eV Total energy + Delta-G solvation = -3351.508363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40999 -40.38363 -38.72856 -36.56429 -35.40220 -34.57143 -33.17417 -32.80040 -30.13154 -28.93405 -26.44963 -25.47424 -24.52304 -23.39729 -21.82569 -21.24129 -19.56454 -18.33350 -18.18783 -17.94658 -17.49288 -17.39331 -16.38692 -16.34199 -15.87683 -15.65232 -15.42319 -15.01703 -14.89387 -14.68077 -14.28100 -14.19712 -13.97323 -13.62725 -13.14748 -13.01238 -12.70007 -12.54333 -12.46394 -12.05960 -11.87249 -11.27536 -11.15398 -10.96284 -10.79673 -10.69866 -10.44201 -10.07054 -9.92224 -9.10462 -8.32175 -5.27696 0.13908 0.33346 1.60953 1.62673 1.72097 1.85434 2.24158 2.73809 2.90519 3.44099 3.47924 3.50933 3.70622 3.73843 3.89274 3.89625 4.02249 4.06743 4.09471 4.33808 4.45244 4.46864 4.52249 4.54828 4.71492 4.78219 4.86198 4.90724 5.13457 5.16574 5.30368 5.44722 5.65052 5.76799 6.54161 6.54851 6.95365 7.00288 7.11531 7.21752 8.01152 8.15365 9.18483 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.003858 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.182441 B = 7255.916255 C = 8096.393159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.100 4.100 3 Si 1.127 2.873 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.302 1.302 7 C -0.326 4.326 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.167 3.833 11 H 0.078 0.922 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.130 3.870 15 N -0.713 5.713 16 C 0.511 3.489 17 O -0.585 6.585 18 C -0.092 4.092 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.170 4.170 22 C 0.082 3.918 23 N -0.511 5.511 24 C 0.095 3.905 25 H 0.243 0.757 26 H 0.359 0.641 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.386 0.614 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -11.212 8.384 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.291 4.291 3 Si 0.953 3.047 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.229 1.229 7 C -0.457 4.457 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.058 3.942 11 H 0.096 0.904 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.005 3.995 15 N -0.364 5.364 16 C 0.299 3.701 17 O -0.465 6.465 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.189 4.189 22 C -0.074 4.074 23 N -0.220 5.220 24 C -0.061 4.061 25 H 0.054 0.946 26 H 0.191 0.809 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.234 0.766 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.248 0.752 33 H 0.152 0.848 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.027 -10.834 9.138 14.173 hybrid contribution -0.265 -0.675 -1.380 1.559 sum -0.238 -11.509 7.758 13.882 Atomic orbital electron populations 1.70958 1.07304 1.27871 1.56133 1.27007 0.96988 1.04370 1.00771 0.82605 0.73412 0.71832 0.76810 1.20954 1.20073 1.22867 1.20364 0.92321 0.86607 1.46423 0.91077 1.42472 1.04532 1.00997 1.89494 1.20764 0.95054 0.84972 0.93400 0.90415 1.22872 0.86493 0.98541 0.93812 1.86500 1.32837 1.92174 1.27661 1.21330 0.98291 0.96994 0.82859 1.45998 1.51098 1.21946 1.17347 1.21021 0.77521 0.83821 0.87771 1.90680 1.57807 1.24389 1.73661 1.20627 1.01950 0.98422 0.92244 1.20451 0.94984 0.97936 0.99142 1.21809 0.93507 0.98724 0.96477 1.22445 1.02821 0.95139 0.98515 1.23262 0.90393 0.98202 0.95544 1.67681 1.08105 1.24618 1.21595 1.22830 1.00598 0.89363 0.93340 0.94642 0.80908 0.94713 0.91619 0.76569 0.93397 0.90678 0.75232 0.84824 0.86237 0.84068 0.81955 0.80185 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.59 13.70 21.65 0.30 -58.29 16 2 C -0.10 -5.44 5.50 84.86 0.47 -4.97 16 3 Si 1.13 49.35 29.92 68.60 2.05 51.40 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.33 -16.73 9.93 84.03 0.83 -15.90 16 8 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.73 -33.81 4.51 -322.94 -1.46 -35.27 16 10 C 0.17 6.05 2.84 44.99 0.13 6.18 16 11 H 0.08 2.65 8.08 -2.38 -0.02 2.63 16 12 C 0.06 2.08 6.86 71.98 0.49 2.57 16 13 O -0.58 -20.13 12.64 -148.98 -1.88 -22.01 16 14 C 0.13 4.44 5.12 86.38 0.44 4.88 16 15 N -0.71 -22.51 5.39 -463.06 -2.49 -25.01 16 16 C 0.51 15.88 7.82 87.66 0.69 16.57 16 17 O -0.58 -22.67 16.03 -3.05 -0.05 -22.72 16 18 C -0.09 -2.09 5.86 29.10 0.17 -1.92 16 19 C -0.12 -3.02 4.39 -19.77 -0.09 -3.11 16 20 C -0.08 -1.83 9.86 22.47 0.22 -1.61 16 21 C -0.17 -3.36 10.11 22.36 0.23 -3.13 16 22 C 0.08 1.74 11.18 84.69 0.95 2.69 16 23 N -0.51 -13.35 10.36 -195.84 -2.03 -15.38 16 24 C 0.10 2.40 10.86 84.67 0.92 3.32 16 25 H 0.24 14.76 6.77 -92.71 -0.63 14.14 16 26 H 0.36 18.31 6.63 -92.71 -0.61 17.69 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.39 9.32 9.12 -74.06 -0.68 8.64 16 30 H 0.05 1.91 7.39 -2.39 -0.02 1.89 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.41 12.78 8.14 -92.71 -0.75 12.02 16 33 H 0.13 2.24 8.09 -2.39 -0.02 2.22 16 34 H 0.12 2.43 8.09 -2.39 -0.02 2.41 16 35 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.82 331.00 -0.92 -74.73 By element: Atomic # 1 Polarization: 47.77 SS G_CDS: -0.80 Total: 46.97 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 5.45 Total: 5.57 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -5.68 Total: -133.95 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.93 Total: -44.73 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Total: -73.82 -0.92 -74.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734365873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.670 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds