Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48494 * 109.47407 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47326 * 120.00025 * 3 2 1 6 6 H 1.48503 * 109.47264 * 239.99770 * 3 2 1 7 7 C 1.40022 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00260 * 1.94994 * 7 2 1 9 9 C 1.41339 * 119.99781 * 181.94691 * 7 2 1 10 10 C 1.40612 * 119.78670 * 186.97566 * 9 7 2 11 11 C 1.38315 * 119.12802 * 179.70520 * 10 9 7 12 12 C 1.38687 * 118.66859 * 0.56810 * 11 10 9 13 13 C 1.39642 * 119.49830 * 359.71520 * 12 11 10 14 14 N 1.39248 * 119.57825 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99633 * 18.82254 * 14 13 12 16 16 O 1.21577 * 120.00399 * 5.80339 * 15 14 13 17 17 N 1.34772 * 119.99929 * 185.80152 * 15 14 13 18 18 C 1.46508 * 120.00349 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47517 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47393 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47393 * 179.97438 * 20 19 18 22 22 O 1.42896 * 109.47321 * 180.02562 * 21 20 19 23 23 N 1.31934 * 120.84855 * 359.97438 * 13 12 11 24 24 H 0.97005 * 120.00165 * 174.83290 * 1 2 3 25 25 H 1.07997 * 120.43352 * 0.02562 * 10 9 7 26 26 H 1.07997 * 120.66383 * 180.26242 * 11 10 9 27 27 H 1.08000 * 120.24872 * 179.74799 * 12 11 10 28 28 H 0.96998 * 120.00128 * 198.82585 * 14 13 12 29 29 H 0.96996 * 120.00398 * 359.97438 * 17 15 14 30 30 H 1.09003 * 109.46656 * 300.00095 * 18 17 15 31 31 H 1.09001 * 109.46939 * 59.99663 * 18 17 15 32 32 H 1.08998 * 109.47440 * 300.00552 * 19 18 17 33 33 H 1.09001 * 109.47165 * 59.99956 * 19 18 17 34 34 H 1.09003 * 109.46830 * 300.00280 * 20 19 18 35 35 H 1.09001 * 109.46888 * 59.99924 * 20 19 18 36 36 H 1.08998 * 109.47440 * 300.00690 * 21 20 19 37 37 H 1.09001 * 109.47165 * 60.00093 * 21 20 19 38 38 H 0.96700 * 114.00580 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0952 1.6964 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4680 -2.1477 -0.0309 9 6 3.4203 -1.2130 0.0421 10 6 4.1232 -2.4219 -0.1055 11 6 5.5057 -2.4056 -0.0687 12 6 6.1519 -1.1939 0.1251 13 6 5.3975 -0.0279 0.2713 14 7 6.0446 1.1896 0.4655 15 6 7.3463 1.3201 0.1413 16 8 7.9279 0.4103 -0.4174 17 7 8.0033 2.4593 0.4363 18 6 9.4184 2.6010 0.0844 19 6 9.9184 3.9779 0.5260 20 6 11.3964 4.1256 0.1591 21 6 11.8962 5.5027 0.6001 22 8 13.2764 5.6409 0.2568 23 7 4.0794 -0.0650 0.2269 24 1 -0.4850 -0.8367 -0.0757 25 1 3.5906 -3.3501 -0.2508 26 1 6.0705 -3.3189 -0.1837 27 1 7.2305 -1.1523 0.1621 28 1 5.5587 1.9438 0.8341 29 1 7.5393 3.1854 0.8816 30 1 9.9970 1.8256 0.5866 31 1 9.5363 2.5009 -0.9946 32 1 9.3397 4.7529 0.0236 33 1 9.8005 4.0784 1.6049 34 1 11.9748 3.3505 0.6619 35 1 11.5147 4.0249 -0.9198 36 1 11.3177 6.2775 0.0970 37 1 11.7779 5.6038 1.6789 38 1 13.6609 6.4919 0.5078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = -88.516085 kcal Electronic energy + Delta-G solvation = -20827.428598 eV Core-core repulsion = 17475.120089 eV Total energy + Delta-G solvation = -3352.308509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81214 -40.11073 -38.22450 -36.85856 -36.13179 -35.38317 -33.96599 -32.98134 -31.29649 -28.84965 -27.22952 -24.75149 -23.66831 -23.21287 -22.38399 -21.66368 -20.47210 -19.42089 -18.60907 -18.09600 -17.28741 -16.97768 -16.74196 -16.40808 -16.23218 -15.78137 -15.41927 -15.16423 -14.84282 -14.65491 -14.50476 -14.22487 -13.71679 -13.26122 -13.03441 -12.86030 -12.79467 -12.67457 -12.23597 -11.84807 -11.82883 -11.74125 -11.61875 -11.16072 -10.97957 -10.83364 -10.41231 -10.18863 -9.74010 -9.26379 -9.15125 -6.81109 0.59440 0.75243 1.37899 1.57571 1.70625 2.00541 2.06502 2.45619 2.69970 2.99762 3.42330 3.57251 3.94017 3.98054 4.07917 4.35822 4.38410 4.40860 4.46027 4.64219 4.67435 4.70592 4.76022 4.83547 4.85584 4.97415 5.28352 5.29762 5.35281 5.37925 5.42450 5.44930 5.69295 5.78260 5.91721 6.05707 6.41629 6.62209 6.85966 6.93081 7.38337 7.51889 7.95783 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.003379 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.464060 B = 8285.508114 C = 9192.190446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.012 3.988 3 Si 1.191 2.809 4 H -0.329 1.329 5 H -0.270 1.270 6 H -0.303 1.303 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.295 4.295 11 C -0.027 4.027 12 C -0.308 4.308 13 C 0.395 3.605 14 N -0.664 5.664 15 C 0.706 3.294 16 O -0.599 6.599 17 N -0.722 5.722 18 C 0.137 3.863 19 C -0.114 4.114 20 C -0.119 4.119 21 C 0.074 3.926 22 O -0.602 6.602 23 N -0.613 5.613 24 H 0.280 0.720 25 H 0.115 0.885 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.416 0.584 29 H 0.415 0.585 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.115 13.423 3.725 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.204 4.204 3 Si 1.024 2.976 4 H -0.263 1.263 5 H -0.197 1.197 6 H -0.232 1.232 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.051 4.051 12 C -0.332 4.332 13 C 0.163 3.837 14 N -0.313 5.313 15 C 0.406 3.594 16 O -0.478 6.478 17 N -0.379 5.379 18 C 0.014 3.986 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.003 4.003 22 O -0.411 6.411 23 N -0.339 5.339 24 H 0.091 0.909 25 H 0.133 0.867 26 H 0.161 0.839 27 H 0.166 0.834 28 H 0.253 0.747 29 H 0.252 0.748 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 19.850 14.310 3.181 24.677 hybrid contribution -0.413 -1.872 0.222 1.930 sum 19.438 12.438 3.403 23.326 Atomic orbital electron populations 1.70666 1.08420 1.32663 1.33562 1.28594 0.95641 1.08051 0.88097 0.81357 0.69818 0.67660 0.78728 1.26287 1.19744 1.23182 1.20703 0.90935 0.95950 1.46447 0.91346 1.18450 0.93427 0.87268 0.87505 1.21758 0.94894 0.98185 1.16841 1.21335 0.93480 0.97790 0.92483 1.21873 1.01637 0.91387 1.18316 1.18098 0.87979 0.85211 0.92389 1.42279 1.10160 1.12952 1.65872 1.15891 0.80410 0.83951 0.79136 1.90819 1.67908 1.40984 1.48063 1.44979 1.12511 1.16019 1.64367 1.21315 0.78360 0.98632 1.00338 1.21580 0.95329 0.95025 1.03254 1.21385 0.94978 0.97259 1.02108 1.22227 0.81690 0.96975 0.99446 1.86425 1.25941 1.43124 1.85561 1.65865 1.07781 1.29468 1.30804 0.90888 0.86694 0.83881 0.83377 0.74673 0.74761 0.92045 0.92401 0.89453 0.89282 0.91627 0.91788 0.92338 0.92226 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.37 13.65 21.84 0.30 -46.07 16 2 C 0.01 0.69 5.52 85.29 0.47 1.16 16 3 Si 1.19 56.76 25.53 68.60 1.75 58.51 16 4 H -0.33 -15.26 7.11 99.48 0.71 -14.55 16 5 H -0.27 -12.01 6.70 99.48 0.67 -11.34 16 6 H -0.30 -14.74 7.10 99.48 0.71 -14.03 16 7 C -0.51 -28.59 9.58 23.47 0.22 -28.36 16 8 H 0.07 3.91 8.05 -2.91 -0.02 3.89 16 9 C 0.26 13.79 6.39 40.21 0.26 14.04 16 10 C -0.29 -14.05 9.83 22.87 0.22 -13.83 16 11 C -0.03 -1.14 10.15 22.40 0.23 -0.91 16 12 C -0.31 -13.59 8.83 22.72 0.20 -13.39 16 13 C 0.40 17.84 7.51 133.24 1.00 18.84 16 14 N -0.66 -23.55 5.42 -322.14 -1.75 -25.30 16 15 C 0.71 22.73 8.40 179.06 1.50 24.23 16 16 O -0.60 -23.71 13.14 -3.96 -0.05 -23.76 16 17 N -0.72 -14.85 5.56 -478.54 -2.66 -17.51 16 18 C 0.14 2.40 5.67 86.38 0.49 2.89 16 19 C -0.11 -1.12 5.33 30.59 0.16 -0.96 16 20 C -0.12 -1.41 5.58 30.59 0.17 -1.24 16 21 C 0.07 0.71 7.05 71.98 0.51 1.22 16 22 O -0.60 -7.77 13.66 -148.98 -2.03 -9.80 16 23 N -0.61 -30.86 4.58 -186.37 -0.85 -31.72 16 24 H 0.28 15.20 8.72 -92.70 -0.81 14.39 16 25 H 0.11 5.14 8.06 -2.91 -0.02 5.11 16 26 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.15 6.43 5.33 -3.15 -0.02 6.41 16 28 H 0.42 12.42 8.84 -92.71 -0.82 11.60 16 29 H 0.42 5.63 8.49 -92.71 -0.79 4.84 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.40 1.44 9.12 -74.06 -0.68 0.77 16 Total: -1.00 -72.70 322.11 -1.11 -73.81 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -1.25 Total: 18.15 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.44 Total: 3.69 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -4.96 Total: -120.60 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -2.09 Total: -33.56 kcal Atomic # 14 Polarization: 56.76 SS G_CDS: 1.75 Total: 58.51 kcal Total: -72.70 -1.11 -73.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.705 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds