Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47281 * 269.99853 * 3 2 1 5 5 H 1.48501 * 109.47173 * 30.00251 * 3 2 1 6 6 H 1.48504 * 109.46984 * 149.99949 * 3 2 1 7 7 C 1.37879 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99567 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46729 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47109 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99954 * 179.97438 * 11 10 9 13 13 O 1.21342 * 120.00200 * 0.02562 * 12 11 10 14 14 C 1.49454 * 119.99727 * 180.02562 * 12 11 10 15 15 O 1.21342 * 120.00073 * 0.02562 * 14 12 11 16 16 N 1.34775 * 119.99727 * 180.02562 * 14 12 11 17 17 C 1.46502 * 119.99956 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47448 * 180.02562 * 17 16 14 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99827 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47837 * 60.00269 * 9 7 2 26 26 H 1.09001 * 109.47582 * 299.99682 * 9 7 2 27 27 H 1.09000 * 109.47466 * 60.00067 * 10 9 7 28 28 H 1.08998 * 109.47240 * 299.99506 * 10 9 7 29 29 H 0.96996 * 119.99644 * 0.02562 * 11 10 9 30 30 H 0.96999 * 120.00100 * 0.02562 * 16 14 12 31 31 H 1.09009 * 109.46695 * 60.00554 * 17 16 14 32 32 H 1.08993 * 109.47458 * 300.00697 * 17 16 14 33 33 H 1.09006 * 109.46659 * 60.00007 * 18 17 16 34 34 H 1.09005 * 109.47449 * 300.01084 * 18 17 16 35 35 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 36 36 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 38 38 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8038 -0.0018 13 8 5.5537 -4.8546 -0.0009 14 6 7.6549 -3.8037 -0.0024 15 8 8.2616 -2.7529 -0.0028 16 7 8.3288 -4.9709 -0.0025 17 6 9.7938 -4.9709 -0.0037 18 6 10.3039 -6.4134 -0.0042 19 7 11.7688 -6.4134 -0.0048 20 6 12.5636 -6.4137 1.1031 21 6 13.8501 -6.4142 0.6990 22 6 13.8496 -6.4136 -0.7100 23 6 12.5628 -6.4133 -1.1131 24 1 -0.4850 0.8401 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6578 -3.1506 -0.8907 28 1 3.6586 -3.1501 0.8893 29 1 5.9715 -1.7965 -0.0025 30 1 7.8438 -5.8109 -0.0026 31 1 10.1578 -4.4568 0.8859 32 1 10.1565 -4.4574 -0.8940 33 1 9.9398 -6.9271 -0.8940 34 1 9.9411 -6.9274 0.8860 35 1 12.2217 -6.4096 2.1276 36 1 14.7209 -6.4149 1.3379 37 1 14.7199 -6.4133 -1.3494 38 1 12.2202 -6.4132 -2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117437516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -22.260051 kcal Electronic energy + Delta-G solvation = -20148.066148 eV Core-core repulsion = 16798.630717 eV Total energy + Delta-G solvation = -3349.435432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49515 -40.58045 -38.52940 -36.18815 -35.18521 -33.12543 -32.79883 -30.35238 -29.10524 -28.90463 -26.01025 -24.27443 -22.72841 -20.96920 -20.81228 -20.68708 -20.11595 -18.55500 -17.70725 -17.08640 -16.57530 -16.29805 -15.83677 -15.32047 -15.07592 -14.39222 -14.38807 -14.21456 -13.83381 -13.72157 -13.52875 -13.15445 -12.67612 -12.64967 -12.52296 -12.35151 -12.03270 -11.72815 -11.55483 -11.29129 -10.48794 -10.36306 -9.99643 -9.64491 -9.58334 -9.37584 -8.99025 -8.85326 -8.64917 -8.48965 -6.15577 -4.16583 1.40884 1.84696 2.12335 2.74095 2.75870 3.23183 3.24087 3.32289 3.33744 3.71447 4.09513 4.11835 4.34727 4.54371 4.63545 4.68463 4.90056 5.00056 5.17431 5.26058 5.32213 5.34656 5.80288 5.90498 5.97986 5.98993 6.04564 6.40079 6.43804 6.66014 6.76145 6.88104 6.99349 7.01796 7.13688 7.42721 7.58316 7.71744 8.10592 8.37972 8.87393 9.44204 10.97073 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.047865 B = 0.002376 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.838782 B =11780.551068 C =12154.387061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.689 5.689 12 C 0.500 3.500 13 O -0.528 6.528 14 C 0.511 3.489 15 O -0.516 6.516 16 N -0.706 5.706 17 C 0.104 3.896 18 C 0.095 3.905 19 N -0.447 5.447 20 C -0.015 4.015 21 C -0.201 4.201 22 C -0.201 4.201 23 C -0.015 4.015 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.409 0.591 30 H 0.415 0.585 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.161 0.839 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.926 -13.223 0.010 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.340 5.340 12 C 0.279 3.721 13 O -0.406 6.406 14 C 0.292 3.708 15 O -0.390 6.390 16 N -0.362 5.362 17 C -0.021 4.021 18 C -0.028 4.028 19 N -0.124 5.124 20 C -0.144 4.144 21 C -0.225 4.225 22 C -0.225 4.225 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.245 0.755 30 H 0.251 0.749 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.179 0.821 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 24.364 -13.075 0.013 27.651 hybrid contribution 0.363 0.956 -0.020 1.022 sum 24.727 -12.119 -0.006 27.537 Atomic orbital electron populations 1.69897 1.06281 1.27154 1.50114 1.24991 0.94788 0.99198 0.94241 0.86763 0.80320 0.83465 0.78628 1.20144 1.21202 1.18970 1.20862 0.88389 0.94962 1.52110 0.90528 1.19830 0.98151 0.90916 0.97270 1.21743 0.74540 1.00937 1.02244 1.46224 1.09615 1.07988 1.70188 1.19858 0.87421 0.85333 0.79476 1.90751 1.69558 1.30967 1.49301 1.20460 0.89142 0.84003 0.77199 1.90776 1.70056 1.30998 1.47202 1.45522 1.06584 1.09503 1.74564 1.21735 0.79611 0.96516 1.04230 1.21926 0.78285 0.96969 1.05574 1.43911 1.05044 1.56991 1.06456 1.21895 0.90583 1.10390 0.91518 1.20939 0.95930 1.10392 0.95267 1.20936 0.95925 1.10396 0.95272 1.21893 0.90596 1.10388 0.91506 0.92474 0.95700 0.96128 0.91178 0.91148 0.75516 0.74888 0.90192 0.90201 0.88249 0.88253 0.82127 0.84708 0.84709 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.46 5.61 -4.04 -0.02 2.44 16 11 N -0.69 -11.35 5.55 -60.72 -0.34 -11.69 16 12 C 0.50 7.75 7.89 -11.58 -0.09 7.66 16 13 O -0.53 -9.11 16.48 5.50 0.09 -9.02 16 14 C 0.51 6.75 7.89 -11.58 -0.09 6.66 16 15 O -0.52 -7.97 16.48 5.50 0.09 -7.88 16 16 N -0.71 -6.55 5.55 -60.73 -0.34 -6.89 16 17 C 0.10 0.79 6.00 -4.04 -0.02 0.77 16 18 C 0.10 0.50 6.20 -4.05 -0.03 0.48 16 19 N -0.45 -3.28 2.75 -117.13 -0.32 -3.60 16 20 C -0.01 -0.12 11.43 -16.75 -0.19 -0.31 16 21 C -0.20 -1.69 10.86 -39.78 -0.43 -2.12 16 22 C -0.20 -1.69 10.86 -39.78 -0.43 -2.12 16 23 C -0.01 -0.11 11.43 -16.75 -0.19 -0.31 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 26 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.41 6.27 7.94 -40.82 -0.32 5.95 16 30 H 0.41 3.17 7.94 -40.82 -0.32 2.84 16 31 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -32.98 334.49 -6.95 -39.93 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.23 Total: 4.29 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.05 Total: -0.32 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.22 Total: -48.30 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.18 Total: -16.89 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.98 -6.95 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117437516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.669 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds