Wall clock time and date at job start Wed Apr 15 2020 11:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47281 * 269.99853 * 3 2 1 5 5 H 1.48501 * 109.47173 * 30.00251 * 3 2 1 6 6 H 1.48504 * 109.46984 * 149.99949 * 3 2 1 7 7 C 1.37879 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99567 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46729 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47109 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99954 * 179.97438 * 11 10 9 13 13 O 1.21342 * 120.00200 * 0.02562 * 12 11 10 14 14 C 1.49454 * 119.99727 * 180.02562 * 12 11 10 15 15 O 1.21342 * 120.00073 * 0.02562 * 14 12 11 16 16 N 1.34775 * 119.99727 * 180.02562 * 14 12 11 17 17 C 1.46502 * 119.99956 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47448 * 180.02562 * 17 16 14 19 19 N 1.46494 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.36345 * 125.63345 * 90.00307 * 19 18 17 21 21 C 1.34850 * 108.21864 * 179.97438 * 20 19 18 22 22 C 1.40894 * 107.41649 * 0.02562 * 21 20 19 23 23 C 1.34846 * 107.41755 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99827 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47837 * 60.00269 * 9 7 2 26 26 H 1.09001 * 109.47582 * 299.99682 * 9 7 2 27 27 H 1.09000 * 109.47466 * 60.00067 * 10 9 7 28 28 H 1.08998 * 109.47240 * 299.99506 * 10 9 7 29 29 H 0.96996 * 119.99644 * 0.02562 * 11 10 9 30 30 H 0.96999 * 120.00100 * 0.02562 * 16 14 12 31 31 H 1.09009 * 109.46695 * 60.00554 * 17 16 14 32 32 H 1.08993 * 109.47458 * 300.00697 * 17 16 14 33 33 H 1.09006 * 109.46659 * 60.00007 * 18 17 16 34 34 H 1.09005 * 109.47449 * 300.01084 * 18 17 16 35 35 H 1.08006 * 125.89009 * 359.71336 * 20 19 18 36 36 H 1.08004 * 126.29266 * 180.02562 * 21 20 19 37 37 H 1.07995 * 126.28821 * 179.97438 * 22 21 20 38 38 H 1.08002 * 125.89342 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8038 -0.0018 13 8 5.5537 -4.8546 -0.0009 14 6 7.6549 -3.8037 -0.0024 15 8 8.2616 -2.7529 -0.0028 16 7 8.3288 -4.9709 -0.0025 17 6 9.7938 -4.9709 -0.0037 18 6 10.3039 -6.4134 -0.0042 19 7 11.7688 -6.4134 -0.0048 20 6 12.5636 -6.4137 1.1031 21 6 13.8501 -6.4142 0.6990 22 6 13.8496 -6.4136 -0.7100 23 6 12.5628 -6.4133 -1.1131 24 1 -0.4850 0.8401 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6578 -3.1506 -0.8907 28 1 3.6586 -3.1501 0.8893 29 1 5.9715 -1.7965 -0.0025 30 1 7.8438 -5.8109 -0.0026 31 1 10.1578 -4.4568 0.8859 32 1 10.1565 -4.4574 -0.8940 33 1 9.9398 -6.9271 -0.8940 34 1 9.9411 -6.9274 0.8860 35 1 12.2217 -6.4096 2.1276 36 1 14.7209 -6.4149 1.3379 37 1 14.7199 -6.4133 -1.3494 38 1 12.2202 -6.4132 -2.1374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117437516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:44 Heat of formation + Delta-G solvation = -46.201335 kcal Electronic energy + Delta-G solvation = -20149.104320 eV Core-core repulsion = 16798.630717 eV Total energy + Delta-G solvation = -3350.473604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.06907 -41.67948 -39.71613 -37.19001 -36.51948 -34.83175 -33.72217 -32.13766 -29.64670 -29.63741 -27.52221 -25.40602 -23.70063 -22.65736 -21.67191 -21.36673 -20.81778 -19.69045 -19.03180 -18.35872 -17.69549 -17.31036 -16.76609 -16.32465 -16.31451 -16.19827 -15.44427 -15.31742 -14.79566 -14.70746 -14.57192 -14.28202 -14.13979 -13.40172 -13.25429 -13.07737 -13.06730 -12.91781 -12.89987 -12.54358 -12.23600 -12.20494 -11.79136 -11.51820 -10.80898 -10.79714 -10.49138 -10.25577 -9.56417 -9.05258 -8.30806 -6.37522 0.26629 1.07755 1.39228 1.40696 1.41184 1.51768 2.04081 2.06901 2.16588 2.35643 2.70729 3.04427 3.38552 3.59191 3.68642 4.18844 4.24707 4.25484 4.38478 4.39328 4.42560 4.68376 4.71956 4.78794 4.79120 4.96343 4.98904 5.28425 5.36481 5.41915 5.43981 5.57927 5.82318 6.09192 6.19408 6.30239 6.32018 6.49198 6.64548 6.71310 6.88179 7.27086 8.85298 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.047865 B = 0.002376 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.838782 B =11780.551068 C =12154.387061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.037 0.963 9 C -0.018 4.018 10 C 0.142 3.858 11 N -0.688 5.688 12 C 0.502 3.498 13 O -0.546 6.546 14 C 0.519 3.481 15 O -0.539 6.539 16 N -0.684 5.684 17 C 0.108 3.892 18 C 0.101 3.899 19 N -0.449 5.449 20 C -0.023 4.023 21 C -0.224 4.224 22 C -0.224 4.224 23 C -0.022 4.022 24 H 0.268 0.732 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.417 0.583 30 H 0.425 0.575 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.180 0.820 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.013 -13.148 0.011 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.574 4.574 8 H 0.055 0.945 9 C -0.056 4.056 10 C 0.019 3.981 11 N -0.340 5.340 12 C 0.283 3.717 13 O -0.425 6.425 14 C 0.299 3.701 15 O -0.416 6.416 16 N -0.339 5.339 17 C -0.016 4.016 18 C -0.022 4.022 19 N -0.126 5.126 20 C -0.152 4.152 21 C -0.248 4.248 22 C -0.248 4.248 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.254 0.746 30 H 0.264 0.736 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.197 0.803 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 26.492 -13.053 0.014 29.533 hybrid contribution -0.293 0.797 -0.022 0.850 sum 26.199 -12.256 -0.007 28.924 Atomic orbital electron populations 1.70055 1.08366 1.28362 1.51892 1.25998 0.95650 1.03592 0.93845 0.85628 0.79629 0.77926 0.79271 1.19128 1.21216 1.16428 1.21198 0.91194 0.93562 1.51432 0.94494 1.19701 0.94765 0.92990 0.98139 1.21290 0.76467 0.98898 1.01437 1.45995 1.08288 1.08971 1.70744 1.20242 0.88613 0.84522 0.78346 1.90745 1.70338 1.31518 1.49851 1.19916 0.87753 0.84759 0.77705 1.90779 1.69920 1.31966 1.48937 1.45413 1.07406 1.08731 1.72321 1.21786 0.78028 0.98238 1.03558 1.22007 0.77150 0.95414 1.07589 1.44051 1.05749 1.56582 1.06210 1.22270 0.90581 1.09788 0.92528 1.21218 0.96799 1.11168 0.95639 1.21215 0.96795 1.11172 0.95644 1.22268 0.90594 1.09784 0.92517 0.92328 0.94649 0.94772 0.92099 0.92099 0.74587 0.73647 0.90884 0.90886 0.86310 0.86319 0.80260 0.84109 0.84111 0.80259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.07 13.96 21.45 0.30 -57.77 16 2 C 0.01 0.38 5.47 84.66 0.46 0.84 16 3 Si 0.95 42.33 27.47 68.60 1.88 44.21 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 7 C -0.54 -29.70 9.66 25.60 0.25 -29.45 16 8 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 9 C -0.02 -0.79 4.16 29.85 0.12 -0.67 16 10 C 0.14 5.41 5.61 86.38 0.48 5.90 16 11 N -0.69 -21.60 5.55 -464.39 -2.58 -24.18 16 12 C 0.50 14.75 7.89 87.27 0.69 15.44 16 13 O -0.55 -18.06 16.48 -3.22 -0.05 -18.12 16 14 C 0.52 12.61 7.89 87.27 0.69 13.30 16 15 O -0.54 -15.60 16.48 -3.22 -0.05 -15.66 16 16 N -0.68 -10.89 5.55 -464.42 -2.58 -13.46 16 17 C 0.11 1.37 6.00 86.38 0.52 1.89 16 18 C 0.10 0.74 6.20 86.38 0.54 1.28 16 19 N -0.45 -5.57 2.75 -524.48 -1.44 -7.01 16 20 C -0.02 -0.31 11.43 83.21 0.95 0.64 16 21 C -0.22 -3.57 10.86 22.14 0.24 -3.33 16 22 C -0.22 -3.57 10.86 22.14 0.24 -3.33 16 23 C -0.02 -0.31 11.43 83.21 0.95 0.64 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 26 H 0.03 1.40 7.57 -2.39 -0.02 1.39 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.42 11.90 7.94 -92.71 -0.74 11.17 16 30 H 0.43 5.22 7.94 -92.71 -0.74 4.49 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 0.47 8.14 -2.38 -0.02 0.46 16 34 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -71.64 334.49 1.17 -70.47 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.45 Total: 18.35 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.13 Total: 3.16 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -6.30 Total: -102.43 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.11 Total: -33.77 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Total: -71.64 1.17 -70.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117437516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.273 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds