Wall clock time and date at job start Wed Apr 15 2020 11:45:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86805 * 119.99722 * 2 1
4 4 H 1.48506 * 109.46886 * 269.99693 * 3 2 1
5 5 H 1.48496 * 109.47060 * 30.00177 * 3 2 1
6 6 H 1.48497 * 109.46792 * 150.00097 * 3 2 1
7 7 C 1.38814 * 119.99840 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00282 * 0.02562 * 7 2 1
9 9 N 1.36944 * 119.99603 * 179.97438 * 7 2 1
10 10 C 1.46494 * 119.99649 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.46844 * 179.97438 * 10 9 7
12 12 C 1.53004 * 109.47116 * 179.97438 * 11 10 9
13 13 N 1.46500 * 109.47340 * 179.97438 * 12 11 10
14 14 C 1.34767 * 120.00222 * 180.02562 * 13 12 11
15 15 O 1.21280 * 120.00349 * 359.97438 * 14 13 12
16 16 C 1.50703 * 120.00173 * 180.02562 * 14 13 12
17 17 C 1.50704 * 109.47352 * 180.02562 * 16 14 13
18 18 C 1.38830 * 120.34988 * 269.97452 * 17 16 14
19 19 C 1.38381 * 118.48403 * 180.02562 * 18 17 16
20 20 C 1.38925 * 119.10900 * 0.02562 * 19 18 17
21 21 O 1.35677 * 119.68043 * 180.02562 * 20 19 18
22 22 N 1.32247 * 120.62932 * 0.02562 * 20 19 18
23 23 C 1.31964 * 121.65048 * 359.97438 * 22 20 19
24 24 H 0.96993 * 119.99894 * 0.02562 * 1 2 3
25 25 H 0.97002 * 119.99644 * 0.02562 * 9 7 2
26 26 H 1.09000 * 109.47839 * 59.99753 * 10 9 7
27 27 H 1.09006 * 109.46926 * 299.99479 * 10 9 7
28 28 H 1.09005 * 109.47113 * 60.00088 * 11 10 9
29 29 H 1.08995 * 109.47421 * 299.99355 * 11 10 9
30 30 H 1.08997 * 109.46749 * 60.00061 * 12 11 10
31 31 H 1.08998 * 109.47402 * 300.00233 * 12 11 10
32 32 H 0.97010 * 119.99825 * 0.02562 * 13 12 11
33 33 H 1.08997 * 109.47410 * 59.99849 * 16 14 13
34 34 H 1.09006 * 109.46698 * 299.99670 * 16 14 13
35 35 H 1.08005 * 120.75911 * 0.04359 * 18 17 16
36 36 H 1.08001 * 120.44565 * 179.97438 * 19 18 17
37 37 H 0.96699 * 114.00260 * 269.97540 * 21 20 19
38 38 H 1.08004 * 119.58141 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6527 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0103 -1.2022 -0.0005
8 1 1.4703 -2.1375 -0.0014
9 7 3.3798 -1.2021 -0.0011
10 6 4.1122 -2.4708 -0.0022
11 6 5.6164 -2.1912 -0.0032
12 6 6.3815 -3.5162 -0.0038
13 7 7.8218 -3.2485 -0.0054
14 6 8.6976 -4.2729 -0.0066
15 8 8.2934 -5.4163 -0.0060
16 6 10.1792 -3.9975 -0.0077
17 6 10.9328 -5.3026 -0.0096
18 6 11.2851 -5.9109 1.1875
19 6 11.9771 -7.1084 1.1407
20 6 12.2944 -7.6577 -0.0953
21 8 12.9722 -8.8316 -0.1547
22 7 11.9422 -7.0473 -1.2143
23 6 11.2820 -5.9048 -1.2017
24 1 -0.4849 0.8400 -0.0004
25 1 3.8647 -0.3620 -0.0007
26 1 3.8486 -3.0419 -0.8924
27 1 3.8492 -3.0429 0.8876
28 1 5.8804 -1.6200 0.8868
29 1 5.8791 -1.6193 -0.8932
30 1 6.1175 -4.0877 -0.8936
31 1 6.1188 -4.0879 0.8863
32 1 8.1452 -2.3339 -0.0056
33 1 10.4433 -3.4264 0.8823
34 1 10.4418 -3.4255 -0.8977
35 1 11.0248 -5.4601 2.1338
36 1 12.2673 -7.6088 2.0527
37 1 13.9337 -8.7302 -0.1722
38 1 11.0106 -5.4354 -2.1357
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001162758319.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:45:49
Heat of formation + Delta-G solvation = -33.979025 kcal
Electronic energy + Delta-G solvation = -20052.601551 eV
Core-core repulsion = 16702.657946 eV
Total energy + Delta-G solvation = -3349.943605 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 279.137 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.96243 -39.70427 -37.51823 -36.22879 -34.52324 -33.60362 -32.28623 -31.87707
-30.16445 -27.88124 -25.31688 -24.11658 -22.99765 -22.09112 -21.36969 -20.42957
-19.20212 -17.71027 -17.34529 -17.10458 -16.60943 -16.18190 -15.82416 -15.29001
-14.70682 -14.59309 -14.54257 -14.06930 -13.62681 -13.56044 -13.12695 -13.02395
-12.84499 -12.48422 -12.17549 -12.03222 -12.02431 -11.24124 -11.07635 -10.88149
-10.74925 -10.30781 -10.19970 -10.03717 -9.78159 -9.62326 -9.19979 -9.13493
-8.93390 -7.27628 -5.79464 -3.15892 0.58330 0.87195 2.43285 2.92611
3.18528 3.33350 3.35687 3.41920 3.47317 4.14774 4.30330 4.47457
4.55630 4.56316 4.62582 4.85476 4.91258 4.98844 5.14232 5.16412
5.32135 5.45042 5.50729 5.56229 5.74542 5.79922 5.87896 5.91168
6.08749 6.12474 6.29767 6.64646 6.67630 7.09714 7.30500 7.55584
7.96486 8.03204 8.39233 9.17777 9.89736 10.09030 11.38837
Molecular weight = 279.14amu
Principal moments of inertia in cm(-1)
A = 0.055547 B = 0.002241 C = 0.002206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.955618 B =12493.760858 C =12687.169053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.003 3.997
3 Si 0.887 3.113
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.278 1.278
7 C -0.246 4.246
8 H 0.091 0.909
9 N -0.757 5.757
10 C 0.160 3.840
11 C -0.141 4.141
12 C 0.122 3.878
13 N -0.728 5.728
14 C 0.510 3.490
15 O -0.533 6.533
16 C -0.098 4.098
17 C -0.126 4.126
18 C -0.046 4.046
19 C -0.183 4.183
20 C 0.307 3.693
21 O -0.483 6.483
22 N -0.502 5.502
23 C 0.139 3.861
24 H 0.260 0.740
25 H 0.360 0.640
26 H 0.031 0.969
27 H 0.030 0.970
28 H 0.068 0.932
29 H 0.068 0.932
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.401 0.599
33 H 0.107 0.893
34 H 0.109 0.891
35 H 0.139 0.861
36 H 0.141 0.859
37 H 0.399 0.601
38 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 30.419 -8.444 1.818 31.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.193 4.193
3 Si 0.718 3.282
4 H -0.211 1.211
5 H -0.217 1.217
6 H -0.204 1.204
7 C -0.376 4.376
8 H 0.109 0.891
9 N -0.402 5.402
10 C 0.032 3.968
11 C -0.179 4.179
12 C -0.002 4.002
13 N -0.380 5.380
14 C 0.295 3.705
15 O -0.409 6.409
16 C -0.138 4.138
17 C -0.129 4.129
18 C -0.071 4.071
19 C -0.205 4.205
20 C 0.128 3.872
21 O -0.290 6.290
22 N -0.220 5.220
23 C -0.018 4.018
24 H 0.070 0.930
25 H 0.193 0.807
26 H 0.048 0.952
27 H 0.048 0.952
28 H 0.086 0.914
29 H 0.087 0.913
30 H 0.089 0.911
31 H 0.088 0.912
32 H 0.235 0.765
33 H 0.125 0.875
34 H 0.127 0.873
35 H 0.157 0.843
36 H 0.159 0.841
37 H 0.256 0.744
38 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 29.560 -10.065 1.060 31.245
hybrid contribution 0.834 2.193 0.804 2.480
sum 30.394 -7.872 1.864 31.452
Atomic orbital electron populations
1.69707 1.05096 1.25859 1.57447 1.24707 0.95291 0.97288 1.02017
0.86505 0.79110 0.84884 0.77733 1.21058 1.21689 1.20425 1.19075
0.80565 0.94841 1.43126 0.89142 1.42682 1.04122 1.02127 1.91316
1.20500 0.87649 0.89535 0.99106 1.21992 0.97197 0.96184 1.02574
1.21353 0.78150 0.97906 1.02763 1.46069 1.07183 1.09290 1.75463
1.20457 0.88080 0.85359 0.76600 1.90763 1.80165 1.21285 1.48679
1.20584 0.91563 0.95762 1.05920 1.20297 1.00156 0.97891 0.94523
1.21373 0.93654 0.93765 0.98357 1.22073 1.03002 0.96738 0.98639
1.19206 0.94270 0.85656 0.88080 1.84806 1.23414 1.24870 1.95875
1.67167 1.13726 1.09145 1.31977 1.22352 0.92368 0.89427 0.97642
0.93017 0.80698 0.95156 0.95229 0.91352 0.91300 0.91132 0.91182
0.76508 0.87493 0.87330 0.84333 0.84103 0.74386 0.82387
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16
2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16
3 Si 0.89 21.78 27.74 -169.99 -4.71 17.07 16
4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16
7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.15 16
8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16
9 N -0.76 -17.75 5.41 -59.91 -0.32 -18.07 16
10 C 0.16 2.97 6.26 -4.05 -0.03 2.94 16
11 C -0.14 -1.88 5.44 -26.73 -0.15 -2.03 16
12 C 0.12 1.47 5.67 -4.04 -0.02 1.45 16
13 N -0.73 -6.77 5.56 -60.30 -0.33 -7.11 16
14 C 0.51 5.26 7.82 -10.99 -0.09 5.18 16
15 O -0.53 -8.10 16.03 5.56 0.09 -8.02 16
16 C -0.10 -0.59 5.85 -29.03 -0.17 -0.76 16
17 C -0.13 -1.06 4.39 -104.47 -0.46 -1.52 16
18 C -0.05 -0.36 9.85 -39.31 -0.39 -0.75 16
19 C -0.18 -1.51 10.04 -39.27 -0.39 -1.91 16
20 C 0.31 3.10 7.75 -17.12 -0.13 2.96 16
21 O -0.48 -4.16 13.56 -18.73 -0.25 -4.41 16
22 N -0.50 -5.74 10.39 -13.33 -0.14 -5.88 16
23 C 0.14 1.33 10.85 -17.57 -0.19 1.14 16
24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16
25 H 0.36 8.10 5.53 -40.82 -0.23 7.87 16
26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16
27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.40 2.52 8.47 -40.82 -0.35 2.18 16
33 H 0.11 0.38 8.09 -51.93 -0.42 -0.04 16
34 H 0.11 0.39 8.09 -51.93 -0.42 -0.03 16
35 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16
36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16
37 H 0.40 1.22 9.06 45.56 0.41 1.63 16
38 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16
LS Contribution 331.93 15.07 5.00 5.00
Total: -1.00 -38.11 331.93 -6.56 -44.67
By element:
Atomic # 1 Polarization: 10.17 SS G_CDS: -4.40 Total: 5.77 kcal
Atomic # 6 Polarization: 1.80 SS G_CDS: -2.27 Total: -0.47 kcal
Atomic # 7 Polarization: -59.60 SS G_CDS: -0.02 Total: -59.62 kcal
Atomic # 8 Polarization: -12.26 SS G_CDS: -0.16 Total: -12.43 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -38.11 -6.56 -44.67 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162758319.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.693 kcal
(2) G-P(sol) polarization free energy of solvation -38.110 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.417 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds