Wall clock time and date at job start Wed Apr 15 2020 11:45:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86805 * 119.99722 * 2 1
4 4 H 1.48506 * 109.46886 * 269.99693 * 3 2 1
5 5 H 1.48496 * 109.47060 * 30.00177 * 3 2 1
6 6 H 1.48497 * 109.46792 * 150.00097 * 3 2 1
7 7 C 1.38814 * 119.99840 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00282 * 0.02562 * 7 2 1
9 9 N 1.36944 * 119.99603 * 179.97438 * 7 2 1
10 10 C 1.46494 * 119.99649 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.46844 * 179.97438 * 10 9 7
12 12 C 1.53004 * 109.47116 * 179.97438 * 11 10 9
13 13 N 1.46500 * 109.47340 * 179.97438 * 12 11 10
14 14 C 1.34767 * 120.00222 * 180.02562 * 13 12 11
15 15 O 1.21280 * 120.00349 * 359.97438 * 14 13 12
16 16 C 1.50703 * 120.00173 * 180.02562 * 14 13 12
17 17 C 1.50704 * 109.47352 * 180.02562 * 16 14 13
18 18 C 1.38830 * 120.34988 * 269.97452 * 17 16 14
19 19 C 1.38381 * 118.48403 * 180.02562 * 18 17 16
20 20 C 1.38925 * 119.10900 * 0.02562 * 19 18 17
21 21 O 1.35677 * 119.68043 * 180.02562 * 20 19 18
22 22 N 1.32247 * 120.62932 * 0.02562 * 20 19 18
23 23 C 1.31964 * 121.65048 * 359.97438 * 22 20 19
24 24 H 0.96993 * 119.99894 * 0.02562 * 1 2 3
25 25 H 0.97002 * 119.99644 * 0.02562 * 9 7 2
26 26 H 1.09000 * 109.47839 * 59.99753 * 10 9 7
27 27 H 1.09006 * 109.46926 * 299.99479 * 10 9 7
28 28 H 1.09005 * 109.47113 * 60.00088 * 11 10 9
29 29 H 1.08995 * 109.47421 * 299.99355 * 11 10 9
30 30 H 1.08997 * 109.46749 * 60.00061 * 12 11 10
31 31 H 1.08998 * 109.47402 * 300.00233 * 12 11 10
32 32 H 0.97010 * 119.99825 * 0.02562 * 13 12 11
33 33 H 1.08997 * 109.47410 * 59.99849 * 16 14 13
34 34 H 1.09006 * 109.46698 * 299.99670 * 16 14 13
35 35 H 1.08005 * 120.75911 * 0.04359 * 18 17 16
36 36 H 1.08001 * 120.44565 * 179.97438 * 19 18 17
37 37 H 0.96699 * 114.00260 * 269.97540 * 21 20 19
38 38 H 1.08004 * 119.58141 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4477 2.6527 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0103 -1.2022 -0.0005
8 1 1.4703 -2.1375 -0.0014
9 7 3.3798 -1.2021 -0.0011
10 6 4.1122 -2.4708 -0.0022
11 6 5.6164 -2.1912 -0.0032
12 6 6.3815 -3.5162 -0.0038
13 7 7.8218 -3.2485 -0.0054
14 6 8.6976 -4.2729 -0.0066
15 8 8.2934 -5.4163 -0.0060
16 6 10.1792 -3.9975 -0.0077
17 6 10.9328 -5.3026 -0.0096
18 6 11.2851 -5.9109 1.1875
19 6 11.9771 -7.1084 1.1407
20 6 12.2944 -7.6577 -0.0953
21 8 12.9722 -8.8316 -0.1547
22 7 11.9422 -7.0473 -1.2143
23 6 11.2820 -5.9048 -1.2017
24 1 -0.4849 0.8400 -0.0004
25 1 3.8647 -0.3620 -0.0007
26 1 3.8486 -3.0419 -0.8924
27 1 3.8492 -3.0429 0.8876
28 1 5.8804 -1.6200 0.8868
29 1 5.8791 -1.6193 -0.8932
30 1 6.1175 -4.0877 -0.8936
31 1 6.1188 -4.0879 0.8863
32 1 8.1452 -2.3339 -0.0056
33 1 10.4433 -3.4264 0.8823
34 1 10.4418 -3.4255 -0.8977
35 1 11.0248 -5.4601 2.1338
36 1 12.2673 -7.6088 2.0527
37 1 13.9337 -8.7302 -0.1722
38 1 11.0106 -5.4354 -2.1357
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001162758319.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:45:48
Heat of formation + Delta-G solvation = -67.409453 kcal
Electronic energy + Delta-G solvation = -20054.051203 eV
Core-core repulsion = 16702.657946 eV
Total energy + Delta-G solvation = -3351.393257 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 279.137 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.60378 -40.51037 -38.16161 -37.58299 -35.92612 -34.27597 -33.84014 -32.74856
-31.66430 -28.68325 -26.73865 -24.73411 -24.22918 -23.25837 -22.66336 -21.32101
-19.81330 -19.65524 -18.01679 -17.94219 -17.39891 -16.93185 -16.78287 -16.49670
-16.00154 -15.68576 -15.48133 -15.21683 -14.82769 -14.68192 -14.18351 -14.04873
-13.82219 -13.74563 -13.28653 -12.87815 -12.76380 -12.60170 -12.52767 -12.45256
-12.07156 -11.99426 -11.80570 -11.07824 -10.97798 -10.78801 -10.43757 -10.07330
-9.75965 -9.31971 -8.03195 -5.38545 -0.03321 0.26367 1.38645 1.44695
1.52064 1.68145 2.18650 2.49566 2.61604 2.82774 3.27742 3.57542
3.61198 3.75302 3.96123 3.97760 4.04311 4.09994 4.26254 4.29914
4.38398 4.57682 4.71573 4.72962 4.75447 4.78550 4.91043 4.99321
5.23061 5.26925 5.30050 5.46359 5.59328 5.74428 6.20252 6.61443
6.62541 6.93618 7.07276 7.31599 7.81569 8.02969 9.18261
Molecular weight = 279.14amu
Principal moments of inertia in cm(-1)
A = 0.055547 B = 0.002241 C = 0.002206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.955618 B =12493.760858 C =12687.169053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.986 5.986
2 C -0.070 4.070
3 Si 0.965 3.035
4 H -0.276 1.276
5 H -0.297 1.297
6 H -0.243 1.243
7 C -0.243 4.243
8 H 0.051 0.949
9 N -0.757 5.757
10 C 0.152 3.848
11 C -0.121 4.121
12 C 0.131 3.869
13 N -0.715 5.715
14 C 0.508 3.492
15 O -0.589 6.589
16 C -0.086 4.086
17 C -0.132 4.132
18 C -0.051 4.051
19 C -0.187 4.187
20 C 0.287 3.713
21 O -0.497 6.497
22 N -0.538 5.538
23 C 0.121 3.879
24 H 0.259 0.741
25 H 0.370 0.630
26 H 0.022 0.978
27 H 0.022 0.978
28 H 0.084 0.916
29 H 0.084 0.916
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.420 0.580
33 H 0.142 0.858
34 H 0.140 0.860
35 H 0.164 0.836
36 H 0.161 0.839
37 H 0.418 0.582
38 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 33.378 -6.342 2.478 34.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.636 5.636
2 C -0.261 4.261
3 Si 0.791 3.209
4 H -0.202 1.202
5 H -0.224 1.224
6 H -0.168 1.168
7 C -0.374 4.374
8 H 0.069 0.931
9 N -0.404 5.404
10 C 0.025 3.975
11 C -0.159 4.159
12 C 0.006 3.994
13 N -0.368 5.368
14 C 0.296 3.704
15 O -0.469 6.469
16 C -0.126 4.126
17 C -0.134 4.134
18 C -0.076 4.076
19 C -0.208 4.208
20 C 0.109 3.891
21 O -0.307 6.307
22 N -0.257 5.257
23 C -0.035 4.035
24 H 0.067 0.933
25 H 0.203 0.797
26 H 0.040 0.960
27 H 0.040 0.960
28 H 0.102 0.898
29 H 0.103 0.897
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.257 0.743
33 H 0.160 0.840
34 H 0.158 0.842
35 H 0.181 0.819
36 H 0.179 0.821
37 H 0.279 0.721
38 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges 32.606 -7.954 1.722 33.606
hybrid contribution -0.118 1.395 0.594 1.521
sum 32.487 -6.559 2.316 33.224
Atomic orbital electron populations
1.69915 1.07402 1.26902 1.59353 1.25680 0.96296 1.01884 1.02264
0.85265 0.78768 0.78588 0.78258 1.20175 1.22351 1.16759 1.19045
0.82929 0.93470 1.41964 0.93103 1.42638 1.02401 1.04238 1.91100
1.20675 0.91001 0.87514 0.98274 1.21754 0.93044 0.97003 1.04090
1.21038 0.79942 0.96838 1.01615 1.45877 1.05744 1.10377 1.74764
1.21193 0.89768 0.84425 0.74997 1.90754 1.81298 1.23570 1.51242
1.20651 0.87585 0.95202 1.09157 1.20557 0.99881 0.98791 0.94165
1.21777 0.92922 0.93563 0.99384 1.22322 1.02696 0.97050 0.98699
1.19500 0.94959 0.86053 0.88603 1.84748 1.25229 1.24817 1.95899
1.67128 1.15088 1.10360 1.33139 1.22704 0.92561 0.89307 0.98973
0.93265 0.79668 0.95955 0.95965 0.89767 0.89725 0.92539 0.92422
0.74256 0.83976 0.84183 0.81865 0.82129 0.72102 0.81166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -63.42 13.97 21.65 0.30 -63.12 16
2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16
3 Si 0.97 44.06 27.74 68.60 1.90 45.96 16
4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16
6 H -0.24 -9.63 6.52 99.48 0.65 -8.99 16
7 C -0.24 -13.97 10.47 84.03 0.88 -13.09 16
8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16
9 N -0.76 -34.42 5.41 -343.45 -1.86 -36.28 16
10 C 0.15 5.49 6.26 86.38 0.54 6.03 16
11 C -0.12 -2.86 5.44 30.60 0.17 -2.69 16
12 C 0.13 2.89 5.67 86.38 0.49 3.38 16
13 N -0.71 -10.91 5.56 -463.07 -2.57 -13.49 16
14 C 0.51 9.14 7.82 87.66 0.69 9.82 16
15 O -0.59 -17.36 16.03 -3.03 -0.05 -17.41 16
16 C -0.09 -0.71 5.85 29.10 0.17 -0.54 16
17 C -0.13 -1.91 4.39 -19.77 -0.09 -2.00 16
18 C -0.05 -0.70 9.85 22.45 0.22 -0.47 16
19 C -0.19 -2.86 10.04 22.47 0.23 -2.63 16
20 C 0.29 5.74 7.75 84.80 0.66 6.39 16
21 O -0.50 -8.53 13.56 -89.95 -1.22 -9.75 16
22 N -0.54 -12.33 10.39 -308.95 -3.21 -15.54 16
23 C 0.12 2.21 10.85 84.63 0.92 3.13 16
24 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16
25 H 0.37 15.36 5.53 -92.71 -0.51 14.85 16
26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
27 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16
28 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16
29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
32 H 0.42 3.29 8.47 -92.70 -0.79 2.50 16
33 H 0.14 0.24 8.09 -2.39 -0.02 0.22 16
34 H 0.14 0.33 8.09 -2.38 -0.02 0.31 16
35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16
36 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16
37 H 0.42 2.49 9.06 -74.06 -0.67 1.82 16
38 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16
Total: -1.00 -86.04 331.93 -2.29 -88.33
By element:
Atomic # 1 Polarization: 18.53 SS G_CDS: -0.93 Total: 17.60 kcal
Atomic # 6 Polarization: -1.65 SS G_CDS: 5.34 Total: 3.68 kcal
Atomic # 7 Polarization: -121.08 SS G_CDS: -7.34 Total: -128.42 kcal
Atomic # 8 Polarization: -25.90 SS G_CDS: -1.27 Total: -27.17 kcal
Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal
Total: -86.04 -2.29 -88.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162758319.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.925 kcal
(2) G-P(sol) polarization free energy of solvation -86.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.117 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.293 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds