Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48507 * 109.47011 * 269.99904 * 3 2 1 5 5 H 1.48492 * 109.47079 * 29.99876 * 3 2 1 6 6 H 1.48497 * 109.47148 * 150.00126 * 3 2 1 7 7 C 1.39025 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 180.02562 * 7 2 1 9 9 N 1.36887 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00276 * 180.02562 * 9 7 2 11 11 O 1.21627 * 119.99515 * 359.97438 * 10 9 7 12 12 C 1.47401 * 120.00277 * 180.02562 * 10 9 7 13 13 C 1.39655 * 120.23013 * 359.97438 * 12 10 9 14 14 C 1.38361 * 120.22735 * 180.02562 * 13 12 10 15 15 F 1.35097 * 119.67143 * 180.02562 * 14 13 12 16 16 C 1.38184 * 120.65698 * 359.97438 * 14 13 12 17 17 C 1.39651 * 120.10836 * 359.97438 * 16 14 13 18 18 N 1.35955 * 133.28656 * 180.02562 * 17 16 14 19 19 C 1.31045 * 109.52036 * 179.97438 * 18 17 16 20 20 S 1.76199 * 125.10416 * 180.02562 * 19 18 17 21 21 N 1.36704 * 109.79441 * 359.97438 * 19 18 17 22 22 H 0.97002 * 126.34996 * 179.97438 * 21 19 18 23 23 C 1.38018 * 107.30882 * 0.02562 * 21 19 18 24 24 H 0.97006 * 120.00107 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00236 * 0.02562 * 9 7 2 26 26 H 1.08001 * 119.88538 * 0.04448 * 13 12 10 27 27 H 1.08002 * 119.94491 * 180.02562 * 16 14 13 28 28 H 1.40996 * 100.00010 * 90.02525 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0001 9 7 1.3244 -2.3895 -0.0005 10 6 1.9983 -3.5567 -0.0005 11 8 3.2146 -3.5567 -0.0010 12 6 1.2613 -4.8333 -0.0011 13 6 -0.1352 -4.8389 -0.0011 14 6 -0.8270 -6.0372 -0.0011 15 9 -2.1779 -6.0295 -0.0016 16 6 -0.1498 -7.2417 -0.0016 17 6 1.2466 -7.2603 -0.0027 18 7 2.1656 -8.2622 -0.0039 19 6 3.3718 -7.7501 -0.0051 20 16 4.8678 -8.6810 -0.0076 21 7 3.2953 -6.3852 -0.0054 22 1 4.0431 -5.7674 -0.0059 23 6 1.9567 -6.0490 -0.0037 24 1 -0.4850 0.8401 -0.0004 25 1 0.3544 -2.3895 -0.0005 26 1 -0.6771 -3.9047 -0.0014 27 1 -0.7013 -8.1703 -0.0021 28 1 5.0742 -8.8091 -1.3964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126704573.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = -9.392899 kcal Electronic energy + Delta-G solvation = -18785.999385 eV Core-core repulsion = 15457.436813 eV Total energy + Delta-G solvation = -3328.562572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.037 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.67614 -41.93380 -38.57524 -36.40652 -34.39487 -32.92699 -31.72075 -29.85153 -29.09916 -25.61476 -23.94388 -22.34050 -21.98696 -19.90255 -18.69639 -18.30128 -17.64471 -17.07039 -16.48845 -15.83975 -15.58037 -15.07171 -14.92683 -14.82064 -14.27352 -14.07590 -13.63198 -13.43856 -12.91413 -12.59302 -11.87275 -11.74756 -11.72093 -11.33667 -10.98285 -10.63445 -10.58655 -10.53495 -10.24499 -9.84514 -8.80923 -8.60556 -8.37934 -8.31346 -8.03179 -6.82202 -4.11210 0.46345 0.95897 1.43366 1.91147 2.67286 3.01418 3.08320 3.13338 3.18145 3.48123 3.87804 4.16341 4.16748 4.42957 4.85639 5.03378 5.04614 5.10880 5.34251 5.53671 5.77356 6.03067 6.21556 6.35161 6.39307 6.83596 7.17842 7.28469 7.62870 7.69142 8.21225 8.78517 9.11987 9.67703 10.33080 Molecular weight = 281.04amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.005154 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.705396 B = 5431.657655 C = 6964.177357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.291 4.291 8 H 0.113 0.887 9 N -0.525 5.525 10 C 0.454 3.546 11 O -0.609 6.609 12 C -0.052 4.052 13 C -0.125 4.125 14 C 0.099 3.901 15 F -0.136 7.136 16 C -0.104 4.104 17 C 0.059 3.941 18 N -0.443 5.443 19 C 0.243 3.757 20 S -0.022 6.022 21 N -0.548 5.548 22 H 0.441 0.559 23 C 0.096 3.904 24 H 0.281 0.719 25 H 0.396 0.604 26 H 0.149 0.851 27 H 0.142 0.858 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -10.846 -0.741 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.420 4.420 8 H 0.130 0.870 9 N -0.157 5.157 10 C 0.244 3.756 11 O -0.498 6.498 12 C -0.058 4.058 13 C -0.147 4.147 14 C 0.078 3.922 15 F -0.115 7.115 16 C -0.126 4.126 17 C -0.065 4.065 18 N -0.166 5.166 19 C -0.132 4.132 20 S 0.130 5.870 21 N -0.162 5.162 22 H 0.285 0.715 23 C -0.021 4.021 24 H 0.091 0.909 25 H 0.232 0.768 26 H 0.166 0.834 27 H 0.160 0.840 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.067 -11.958 -0.498 12.355 hybrid contribution -0.782 2.444 -0.939 2.732 sum 2.285 -9.514 -1.438 9.890 Atomic orbital electron populations 1.69588 1.06297 1.29473 1.45913 1.25508 0.95773 1.00524 0.96180 0.85702 0.79349 0.79644 0.78830 1.19891 1.20425 1.18943 1.19956 0.93995 0.81916 1.46180 0.86967 1.41957 1.09764 1.04823 1.59136 1.17353 0.87367 0.82867 0.88024 1.90533 1.12987 1.86740 1.59559 1.19145 0.91986 0.92066 1.02652 1.21173 0.92760 0.97946 1.02861 1.16973 0.76911 0.93439 1.04905 1.91500 1.28433 1.97352 1.94201 1.19964 0.90868 0.97442 1.04287 1.18623 0.93245 0.88194 1.06399 1.71130 0.96751 1.30047 1.18695 1.24427 0.97934 0.83228 1.07651 1.87021 1.19021 1.68120 1.12790 1.43725 1.07778 1.06872 1.57816 0.71500 1.18729 0.84052 0.95035 1.04273 0.90871 0.76832 0.83368 0.83982 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.83 13.05 55.50 0.72 -21.10 15 2 C 0.03 0.63 5.50 -17.46 -0.10 0.54 15 3 Si 0.94 19.23 29.55 -169.99 -5.02 14.21 15 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 7 C -0.29 -7.49 9.68 -15.00 -0.15 -7.64 15 8 H 0.11 3.00 7.15 -52.49 -0.38 2.62 15 9 N -0.53 -12.60 5.23 -11.96 -0.06 -12.66 15 10 C 0.45 10.50 7.71 -12.53 -0.10 10.40 15 11 O -0.61 -15.30 14.83 5.25 0.08 -15.22 15 12 C -0.05 -1.01 5.88 -104.96 -0.62 -1.62 15 13 C -0.12 -2.14 9.51 -39.01 -0.37 -2.51 15 14 C 0.10 1.56 7.27 -39.56 -0.29 1.28 15 15 F -0.14 -2.06 17.25 2.25 0.04 -2.02 15 16 C -0.10 -1.59 10.06 -39.07 -0.39 -1.99 15 17 C 0.06 1.01 7.21 -84.70 -0.61 0.40 15 18 N -0.44 -7.43 11.33 -10.90 -0.12 -7.56 15 19 C 0.24 3.72 8.45 -88.38 -0.75 2.97 15 20 S -0.02 -0.24 26.28 -107.50 -2.83 -3.07 15 21 N -0.55 -9.21 6.04 -10.35 -0.06 -9.28 15 22 H 0.44 7.27 7.70 -40.82 -0.31 6.96 15 23 C 0.10 1.78 6.88 -83.58 -0.57 1.21 15 24 H 0.28 6.57 8.31 -40.82 -0.34 6.23 15 25 H 0.40 9.01 5.92 -40.82 -0.24 8.77 15 26 H 0.15 2.44 6.39 -52.49 -0.34 2.11 15 27 H 0.14 1.84 8.06 -52.49 -0.42 1.42 15 28 H 0.11 0.96 9.55 96.90 0.93 1.88 15 LS Contribution 276.10 15.07 4.16 4.16 Total: -1.00 -27.95 276.10 -6.93 -34.89 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.10 Total: 14.62 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.94 Total: 3.03 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.48 Total: -50.59 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.83 Total: -3.07 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.95 -6.93 -34.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126704573.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.493 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds