Wall clock time and date at job start Wed Apr 15 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48507 * 109.47011 * 269.99904 * 3 2 1 5 5 H 1.48492 * 109.47079 * 29.99876 * 3 2 1 6 6 H 1.48497 * 109.47148 * 150.00126 * 3 2 1 7 7 C 1.39025 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 180.02562 * 7 2 1 9 9 N 1.36887 * 120.00007 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00276 * 180.02562 * 9 7 2 11 11 O 1.21627 * 119.99515 * 359.97438 * 10 9 7 12 12 C 1.47401 * 120.00277 * 180.02562 * 10 9 7 13 13 C 1.39655 * 120.23013 * 359.97438 * 12 10 9 14 14 C 1.38361 * 120.22735 * 180.02562 * 13 12 10 15 15 F 1.35097 * 119.67143 * 180.02562 * 14 13 12 16 16 C 1.38184 * 120.65698 * 359.97438 * 14 13 12 17 17 C 1.39651 * 120.10836 * 359.97438 * 16 14 13 18 18 N 1.35955 * 133.28656 * 180.02562 * 17 16 14 19 19 C 1.31045 * 109.52036 * 179.97438 * 18 17 16 20 20 S 1.76199 * 125.10416 * 180.02562 * 19 18 17 21 21 N 1.36704 * 109.79441 * 359.97438 * 19 18 17 22 22 H 0.97002 * 126.34996 * 179.97438 * 21 19 18 23 23 C 1.38018 * 107.30882 * 0.02562 * 21 19 18 24 24 H 0.97006 * 120.00107 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00236 * 0.02562 * 9 7 2 26 26 H 1.08001 * 119.88538 * 0.04448 * 13 12 10 27 27 H 1.08002 * 119.94491 * 180.02562 * 16 14 13 28 28 H 1.40996 * 100.00010 * 90.02525 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4452 2.6527 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0089 -1.2040 -0.0005 8 1 3.0889 -1.2040 -0.0001 9 7 1.3244 -2.3895 -0.0005 10 6 1.9983 -3.5567 -0.0005 11 8 3.2146 -3.5567 -0.0010 12 6 1.2613 -4.8333 -0.0011 13 6 -0.1352 -4.8389 -0.0011 14 6 -0.8270 -6.0372 -0.0011 15 9 -2.1779 -6.0295 -0.0016 16 6 -0.1498 -7.2417 -0.0016 17 6 1.2466 -7.2603 -0.0027 18 7 2.1656 -8.2622 -0.0039 19 6 3.3718 -7.7501 -0.0051 20 16 4.8678 -8.6810 -0.0076 21 7 3.2953 -6.3852 -0.0054 22 1 4.0431 -5.7674 -0.0059 23 6 1.9567 -6.0490 -0.0037 24 1 -0.4850 0.8401 -0.0004 25 1 0.3544 -2.3895 -0.0005 26 1 -0.6771 -3.9047 -0.0014 27 1 -0.7013 -8.1703 -0.0021 28 1 5.0742 -8.8091 -1.3964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126704573.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:37 Heat of formation + Delta-G solvation = -27.780597 kcal Electronic energy + Delta-G solvation = -18786.796736 eV Core-core repulsion = 15457.436813 eV Total energy + Delta-G solvation = -3329.359922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.037 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.93454 -43.26243 -40.32796 -37.84623 -36.23161 -34.30384 -33.52589 -31.28498 -30.44596 -27.38387 -25.37999 -23.74192 -23.34408 -21.50062 -20.35359 -19.66432 -19.01990 -18.43021 -17.85804 -17.25444 -16.90887 -16.56312 -16.39675 -16.24565 -15.82230 -15.54955 -15.23054 -14.98517 -14.25092 -14.14943 -13.63162 -13.07030 -13.05447 -12.83831 -12.50914 -12.16815 -12.14886 -11.93116 -11.63145 -11.60553 -10.65112 -10.21950 -9.63770 -9.49788 -9.40993 -8.63778 -6.06768 -0.83881 -0.11196 0.07376 0.79670 1.36548 1.40976 1.53517 1.60168 1.87664 2.01123 2.20490 2.55684 2.82366 2.85186 3.17590 3.40934 3.70159 3.74296 3.97352 4.19425 4.27369 4.61692 4.85011 4.90936 5.05764 5.28442 5.50861 5.79729 5.99668 6.31536 6.37640 6.92248 7.29892 7.84748 8.52531 Molecular weight = 281.04amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.005154 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.705396 B = 5431.657655 C = 6964.177357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.006 4.006 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.333 4.333 8 H 0.091 0.909 9 N -0.538 5.538 10 C 0.460 3.540 11 O -0.632 6.632 12 C -0.078 4.078 13 C -0.107 4.107 14 C 0.100 3.900 15 F -0.128 7.128 16 C -0.075 4.075 17 C 0.049 3.951 18 N -0.454 5.454 19 C 0.251 3.749 20 S 0.001 5.999 21 N -0.555 5.555 22 H 0.440 0.560 23 C 0.079 3.921 24 H 0.286 0.714 25 H 0.399 0.601 26 H 0.152 0.848 27 H 0.175 0.825 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -12.574 -0.934 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.462 4.462 8 H 0.109 0.891 9 N -0.171 5.171 10 C 0.250 3.750 11 O -0.523 6.523 12 C -0.084 4.084 13 C -0.129 4.129 14 C 0.078 3.922 15 F -0.107 7.107 16 C -0.096 4.096 17 C -0.074 4.074 18 N -0.178 5.178 19 C -0.125 4.125 20 S 0.152 5.848 21 N -0.169 5.169 22 H 0.284 0.716 23 C -0.038 4.038 24 H 0.095 0.905 25 H 0.235 0.765 26 H 0.169 0.831 27 H 0.192 0.808 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.874 -13.718 -0.694 14.033 hybrid contribution -0.680 2.607 -0.905 2.842 sum 2.194 -11.111 -1.599 11.438 Atomic orbital electron populations 1.69637 1.07126 1.30328 1.46987 1.26231 0.96577 1.02871 0.95198 0.84820 0.77997 0.76024 0.78922 1.19332 1.19314 1.19320 1.19869 0.93360 0.83347 1.49667 0.89081 1.41899 1.09767 1.04717 1.60709 1.17947 0.87315 0.83855 0.85905 1.90491 1.14369 1.87556 1.59884 1.18821 0.92741 0.90691 1.06155 1.21243 0.92004 0.98975 1.00681 1.16805 0.77205 0.92933 1.05285 1.91529 1.27712 1.97274 1.94168 1.20314 0.90294 0.98465 1.00498 1.18903 0.94059 0.87800 1.06632 1.71198 0.97141 1.29738 1.19694 1.25204 0.99204 0.82933 1.05142 1.87015 1.16178 1.66660 1.14920 1.43866 1.07289 1.07615 1.58149 0.71649 1.18901 0.85107 0.95137 1.04656 0.90462 0.76503 0.83089 0.80796 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.82 13.05 21.68 0.28 -45.54 15 2 C -0.01 -0.31 5.50 84.95 0.47 0.16 15 3 Si 1.00 40.01 29.55 68.60 2.03 42.04 15 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 5 H -0.27 -10.18 7.11 99.48 0.71 -9.48 15 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 7 C -0.33 -17.89 9.68 84.09 0.81 -17.08 15 8 H 0.09 5.14 7.15 -2.91 -0.02 5.12 15 9 N -0.54 -26.81 5.23 -310.01 -1.62 -28.43 15 10 C 0.46 21.92 7.71 86.66 0.67 22.59 15 11 O -0.63 -32.90 14.83 -4.12 -0.06 -32.96 15 12 C -0.08 -3.04 5.88 -20.08 -0.12 -3.16 15 13 C -0.11 -3.60 9.51 22.64 0.22 -3.38 15 14 C 0.10 2.91 7.27 22.29 0.16 3.07 15 15 F -0.13 -3.54 17.25 44.97 0.78 -2.76 15 16 C -0.07 -2.07 10.06 22.60 0.23 -1.84 15 17 C 0.05 1.58 7.21 39.37 0.28 1.86 15 18 N -0.45 -14.20 11.33 -188.40 -2.13 -16.34 15 19 C 0.25 7.19 8.45 179.57 1.52 8.71 15 20 S 0.00 0.02 26.28 -56.49 -1.48 -1.46 15 21 N -0.56 -18.31 6.04 -186.66 -1.13 -19.44 15 22 H 0.44 14.53 7.70 -92.71 -0.71 13.82 15 23 C 0.08 2.88 6.88 39.14 0.27 3.15 15 24 H 0.29 13.45 8.31 -92.70 -0.77 12.68 15 25 H 0.40 18.82 5.92 -92.71 -0.55 18.28 15 26 H 0.15 4.97 6.39 -2.91 -0.02 4.95 15 27 H 0.17 3.73 8.06 -2.91 -0.02 3.70 15 28 H 0.13 1.93 9.55 73.80 0.70 2.64 15 Total: -1.00 -60.76 276.10 1.89 -58.87 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.73 Total: 31.93 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 4.51 Total: 14.09 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.60 Total: -109.75 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.06 Total: -32.96 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.48 Total: -1.46 kcal Total: -60.76 1.89 -58.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126704573.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.090 kcal (2) G-P(sol) polarization free energy of solvation -60.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds