Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30084 * 125.41051 * 2 1 4 4 C 1.35833 * 108.53782 * 179.97438 * 3 2 1 5 5 C 1.48039 * 126.39861 * 179.97438 * 4 3 2 6 6 N 1.32111 * 124.28303 * 154.72109 * 5 4 3 7 7 N 1.27250 * 119.94759 * 179.73315 * 6 5 4 8 8 S 1.56573 * 110.13286 * 0.52475 * 7 6 5 9 9 C 1.39682 * 124.28253 * 335.02381 * 5 4 3 10 10 C 1.46425 * 128.48767 * 359.97438 * 9 5 4 11 11 O 1.21651 * 120.00257 * 0.02562 * 10 9 5 12 12 O 1.34886 * 119.99881 * 180.02562 * 10 9 5 13 13 C 1.34835 * 116.99633 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00309 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99419 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00443 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99616 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47434 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47048 * 119.99920 * 17 15 13 20 20 H 1.48500 * 109.46975 * 239.99853 * 17 15 13 21 21 C 1.35799 * 107.20198 * 359.97438 * 4 3 2 22 22 O 1.33981 * 125.41602 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.47002 * 90.00150 * 1 2 3 24 24 H 1.08998 * 109.46864 * 210.00328 * 1 2 3 25 25 H 1.09002 * 109.46850 * 330.00561 * 1 2 3 26 26 H 0.96994 * 120.00703 * 180.02562 * 16 15 13 27 27 H 1.07995 * 126.51703 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2608 1.0602 0.0000 4 6 3.5606 0.6660 0.0006 5 6 4.7471 1.5513 0.0002 6 7 5.9337 1.2055 0.4669 7 7 6.9000 2.0322 0.4208 8 16 6.4251 3.3813 -0.2164 9 6 4.7522 2.8600 -0.4880 10 6 3.6467 3.6161 -1.0797 11 8 2.5500 3.1019 -1.1932 12 8 3.8443 4.8828 -1.4990 13 6 2.7848 5.5228 -2.0339 14 1 1.8324 5.0194 -2.1112 15 6 2.9183 6.8287 -2.4851 16 7 4.0770 7.4415 -2.3906 17 14 1.4507 7.7151 -3.2267 18 1 0.2712 6.8129 -3.2181 19 1 1.1501 8.9297 -2.4269 20 1 1.7640 8.1077 -4.6242 21 6 3.5684 -0.6920 0.0015 22 8 2.2835 -1.0919 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 4.1702 8.3541 -2.7056 27 1 4.4400 -1.3296 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223861898.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = 33.390424 kcal Electronic energy + Delta-G solvation = -18970.969413 eV Core-core repulsion = 15631.889276 eV Total energy + Delta-G solvation = -3339.080137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.030 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.04010 -40.35441 -38.85728 -35.37351 -34.59774 -32.65350 -32.40331 -30.93790 -28.17319 -26.76211 -25.52964 -23.52236 -22.02939 -21.24423 -19.78017 -18.49323 -17.84127 -16.77218 -16.72561 -16.53413 -15.53189 -15.32596 -14.77347 -14.41265 -14.34199 -13.78990 -13.50719 -13.02364 -12.95667 -12.42541 -12.27420 -11.80575 -11.66342 -11.39881 -11.15605 -10.62435 -10.52574 -10.18788 -10.03536 -9.89766 -9.70275 -9.34512 -8.99667 -8.78741 -8.38424 -6.67796 -4.20633 0.05015 1.24013 1.41986 1.91191 2.16127 2.87901 3.01484 3.07790 3.15774 3.17416 3.66758 3.74376 3.83206 4.29218 4.61299 4.72102 4.95069 5.16549 5.37640 5.45953 5.51655 5.71954 5.97305 6.02546 6.41571 6.57698 7.17060 7.71458 7.86187 8.04075 8.56287 8.79448 9.62451 10.48605 Molecular weight = 281.03amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.006492 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.029162 B = 4312.031578 C = 6012.188910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.177 3.823 3 N -0.405 5.405 4 C 0.061 3.939 5 C 0.125 3.875 6 N -0.240 5.240 7 N -0.294 5.294 8 S 0.447 5.553 9 C -0.197 4.197 10 C 0.449 3.551 11 O -0.490 6.490 12 O -0.204 6.204 13 C -0.348 4.348 14 H 0.105 0.895 15 C 0.038 3.962 16 N -0.842 5.842 17 Si 0.949 3.051 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.274 1.274 21 C -0.037 4.037 22 O -0.206 6.206 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.275 0.725 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -10.338 3.135 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.032 4.032 3 N -0.133 5.133 4 C -0.061 4.061 5 C -0.021 4.021 6 N -0.106 5.106 7 N -0.275 5.275 8 S 0.584 5.416 9 C -0.335 4.335 10 C 0.294 3.706 11 O -0.385 6.385 12 O -0.111 6.111 13 C -0.426 4.426 14 H 0.123 0.877 15 C -0.169 4.169 16 N -0.478 5.478 17 Si 0.773 3.227 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.110 4.110 22 O -0.094 6.094 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.252 -9.520 3.561 10.168 hybrid contribution -1.473 -0.474 -0.651 1.679 sum -1.726 -9.995 2.909 10.551 Atomic orbital electron populations 1.20192 0.81321 1.04675 1.04631 1.26449 0.96721 0.78193 1.01797 1.71173 0.99720 1.27993 1.14420 1.18614 0.89424 0.89508 1.08558 1.19536 0.91259 0.90779 1.00572 1.70681 0.96411 1.26222 1.17280 1.78491 1.23237 1.03539 1.22216 1.82894 0.98167 1.18852 1.41641 1.27125 1.00208 0.97634 1.08580 1.18657 0.85912 0.82910 0.83158 1.90854 1.23386 1.69341 1.54874 1.83914 1.40578 1.22617 1.64001 1.21562 0.89779 0.95285 1.36015 0.87733 1.25503 0.98864 0.95592 0.96918 1.69978 1.23496 1.12963 1.41406 0.85505 0.79611 0.79071 0.78527 1.18570 1.19870 1.19903 1.25000 0.84864 0.95434 1.05713 1.84375 1.16515 1.38171 1.70315 0.89076 0.89790 0.88056 0.91461 0.76162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 36.01 0.38 -0.16 15 2 C 0.18 2.80 8.31 -13.02 -0.11 2.69 15 3 N -0.40 -8.15 8.37 -7.58 -0.06 -8.22 15 4 C 0.06 1.16 6.71 -82.95 -0.56 0.60 15 5 C 0.12 2.49 6.90 -83.19 -0.57 1.92 15 6 N -0.24 -4.45 11.56 33.18 0.38 -4.07 15 7 N -0.29 -5.27 12.48 60.35 0.75 -4.52 15 8 S 0.45 7.98 23.62 -107.50 -2.54 5.44 15 9 C -0.20 -4.25 6.85 -35.75 -0.24 -4.49 15 10 C 0.45 11.40 7.87 34.03 0.27 11.67 15 11 O -0.49 -13.09 12.94 -19.38 -0.25 -13.34 15 12 O -0.20 -5.62 9.74 -22.01 -0.21 -5.84 15 13 C -0.35 -9.70 9.65 30.94 0.30 -9.40 15 14 H 0.11 2.92 6.86 -52.49 -0.36 2.56 15 15 C 0.04 0.99 5.50 -17.52 -0.10 0.90 15 16 N -0.84 -22.97 13.67 55.49 0.76 -22.21 15 17 Si 0.95 19.85 29.55 -169.99 -5.02 14.83 15 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 20 H -0.27 -5.55 7.11 56.52 0.40 -5.14 15 21 C -0.04 -0.55 12.13 29.86 0.36 -0.19 15 22 O -0.21 -3.03 10.74 5.82 0.06 -2.97 15 23 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 15 25 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.28 6.81 8.31 -40.82 -0.34 6.47 15 27 H 0.22 2.45 8.06 -52.49 -0.42 2.03 15 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -32.67 276.07 -3.43 -36.10 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -1.19 Total: -2.90 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.27 Total: 3.53 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 1.83 Total: -39.02 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.40 Total: -22.14 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -2.54 Total: 5.44 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.67 -3.43 -36.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223861898.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.495 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds