Wall clock time and date at job start Wed Apr 15 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30084 * 125.41051 * 2 1 4 4 C 1.35833 * 108.53782 * 179.97438 * 3 2 1 5 5 C 1.48039 * 126.39861 * 179.97438 * 4 3 2 6 6 N 1.32111 * 124.28303 * 154.72109 * 5 4 3 7 7 N 1.27250 * 119.94759 * 179.73315 * 6 5 4 8 8 S 1.56573 * 110.13286 * 0.52475 * 7 6 5 9 9 C 1.39682 * 124.28253 * 335.02381 * 5 4 3 10 10 C 1.46425 * 128.48767 * 359.97438 * 9 5 4 11 11 O 1.21651 * 120.00257 * 0.02562 * 10 9 5 12 12 O 1.34886 * 119.99881 * 180.02562 * 10 9 5 13 13 C 1.34835 * 116.99633 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00309 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99419 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00443 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99616 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47434 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47048 * 119.99920 * 17 15 13 20 20 H 1.48500 * 109.46975 * 239.99853 * 17 15 13 21 21 C 1.35799 * 107.20198 * 359.97438 * 4 3 2 22 22 O 1.33981 * 125.41602 * 179.97438 * 2 1 3 23 23 H 1.08995 * 109.47002 * 90.00150 * 1 2 3 24 24 H 1.08998 * 109.46864 * 210.00328 * 1 2 3 25 25 H 1.09002 * 109.46850 * 330.00561 * 1 2 3 26 26 H 0.96994 * 120.00703 * 180.02562 * 16 15 13 27 27 H 1.07995 * 126.51703 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2608 1.0602 0.0000 4 6 3.5606 0.6660 0.0006 5 6 4.7471 1.5513 0.0002 6 7 5.9337 1.2055 0.4669 7 7 6.9000 2.0322 0.4208 8 16 6.4251 3.3813 -0.2164 9 6 4.7522 2.8600 -0.4880 10 6 3.6467 3.6161 -1.0797 11 8 2.5500 3.1019 -1.1932 12 8 3.8443 4.8828 -1.4990 13 6 2.7848 5.5228 -2.0339 14 1 1.8324 5.0194 -2.1112 15 6 2.9183 6.8287 -2.4851 16 7 4.0770 7.4415 -2.3906 17 14 1.4507 7.7151 -3.2267 18 1 0.2712 6.8129 -3.2181 19 1 1.1501 8.9297 -2.4269 20 1 1.7640 8.1077 -4.6242 21 6 3.5684 -0.6920 0.0015 22 8 2.2835 -1.0919 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 4.1702 8.3541 -2.7056 27 1 4.4400 -1.3296 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223861898.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:40 Heat of formation + Delta-G solvation = 8.868795 kcal Electronic energy + Delta-G solvation = -18972.032751 eV Core-core repulsion = 15631.889276 eV Total energy + Delta-G solvation = -3340.143475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.030 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.30150 -41.94459 -40.80804 -37.28227 -36.00873 -34.35919 -33.97873 -32.29528 -29.65041 -28.12454 -27.39113 -25.05999 -23.62765 -22.49917 -21.46910 -20.09927 -19.69692 -18.51628 -18.09068 -17.81628 -17.15506 -17.03153 -16.36228 -16.23684 -16.06598 -15.00611 -14.88579 -14.61949 -13.92690 -13.87246 -13.63629 -13.30546 -13.24964 -13.12882 -12.60660 -12.40627 -12.17248 -12.02484 -11.60906 -11.40473 -11.23858 -10.96323 -10.85141 -10.71282 -9.69248 -8.58942 -6.32014 -1.52881 -0.34884 0.07999 0.33956 0.76782 1.36070 1.37436 1.54514 1.69391 1.71979 1.98063 2.01018 2.30572 2.53643 2.97486 3.21219 3.42613 3.84036 4.04660 4.49903 4.63237 4.67290 4.71053 4.83312 4.93078 5.14122 5.29409 5.77397 6.31933 6.56393 6.75948 6.85277 7.64998 8.61284 Molecular weight = 281.03amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.006492 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.029162 B = 4312.031578 C = 6012.188910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.184 3.816 3 N -0.465 5.465 4 C 0.003 3.997 5 C 0.153 3.847 6 N -0.241 5.241 7 N -0.276 5.276 8 S 0.527 5.473 9 C -0.260 4.260 10 C 0.458 3.542 11 O -0.506 6.506 12 O -0.231 6.231 13 C -0.405 4.405 14 H 0.088 0.912 15 C 0.000 4.000 16 N -0.891 5.891 17 Si 1.019 2.981 18 H -0.263 1.263 19 H -0.260 1.260 20 H -0.260 1.260 21 C 0.004 3.996 22 O -0.196 6.196 23 H 0.103 0.897 24 H 0.121 0.879 25 H 0.097 0.903 26 H 0.282 0.718 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -12.263 3.601 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.025 4.025 3 N -0.194 5.194 4 C -0.117 4.117 5 C 0.007 3.993 6 N -0.107 5.107 7 N -0.258 5.258 8 S 0.664 5.336 9 C -0.398 4.398 10 C 0.303 3.697 11 O -0.400 6.400 12 O -0.139 6.139 13 C -0.481 4.481 14 H 0.106 0.894 15 C -0.202 4.202 16 N -0.527 5.527 17 Si 0.838 3.162 18 H -0.187 1.187 19 H -0.185 1.185 20 H -0.184 1.184 21 C -0.070 4.070 22 O -0.083 6.083 23 H 0.121 0.879 24 H 0.140 0.860 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -0.078 -11.424 4.017 12.109 hybrid contribution -1.334 -0.291 -0.591 1.488 sum -1.412 -11.714 3.426 12.286 Atomic orbital electron populations 1.20475 0.78135 1.06328 1.05860 1.27300 0.98160 0.77501 0.99577 1.71091 1.00897 1.30518 1.16886 1.18867 0.89067 0.91121 1.12639 1.19884 0.91924 0.90063 0.97439 1.70812 0.95920 1.25935 1.18027 1.78397 1.23280 1.03795 1.20305 1.82730 0.95010 1.17136 1.38689 1.26929 1.01678 0.98949 1.12231 1.19240 0.86690 0.82409 0.81363 1.90811 1.24761 1.69669 1.54722 1.83923 1.40758 1.23508 1.65752 1.21585 0.89701 0.96656 1.40189 0.89392 1.26558 1.01913 0.95431 0.96308 1.70042 1.25490 1.13742 1.43475 0.84540 0.75666 0.77763 0.78247 1.18650 1.18453 1.18426 1.25695 0.85842 0.94286 1.01157 1.84434 1.16401 1.37670 1.69791 0.87907 0.86033 0.88447 0.90809 0.72141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.51 71.24 0.75 -0.24 15 2 C 0.18 5.54 8.31 88.37 0.73 6.27 15 3 N -0.47 -18.73 8.37 -292.76 -2.45 -21.18 15 4 C 0.00 0.13 6.71 40.56 0.27 0.40 15 5 C 0.15 5.98 6.90 42.05 0.29 6.27 15 6 N -0.24 -8.39 11.56 -48.93 -0.57 -8.95 15 7 N -0.28 -9.17 12.48 37.02 0.46 -8.71 15 8 S 0.53 18.09 23.62 -56.49 -1.33 16.75 15 9 C -0.26 -11.29 6.85 24.75 0.17 -11.12 15 10 C 0.46 24.29 7.87 69.95 0.55 24.84 15 11 O -0.51 -28.26 12.94 19.34 0.25 -28.01 15 12 O -0.23 -13.41 9.74 9.96 0.10 -13.32 15 13 C -0.40 -23.88 9.65 67.96 0.66 -23.22 15 14 H 0.09 5.26 6.86 -2.91 -0.02 5.24 15 15 C 0.00 -0.02 5.50 84.89 0.47 0.44 15 16 N -0.89 -50.34 13.67 21.63 0.30 -50.05 15 17 Si 1.02 41.75 29.55 68.60 2.03 43.77 15 18 H -0.26 -10.59 7.11 99.48 0.71 -9.89 15 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 21 C 0.00 0.11 12.13 67.25 0.82 0.93 15 22 O -0.20 -5.21 10.74 -2.10 -0.02 -5.23 15 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.12 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.28 14.36 8.31 -92.71 -0.77 13.59 15 27 H 0.26 4.60 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -74.90 276.07 4.71 -70.19 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.25 Total: 0.15 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.70 Total: 4.57 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -2.26 Total: -88.89 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: 0.32 Total: -46.55 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 18.09 SS G_CDS: -1.33 Total: 16.75 kcal Total: -74.90 4.71 -70.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223861898.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.060 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds