Wall clock time and date at job start Wed Apr 15 2020 11:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86802 * 120.00197 * 2 1 4 4 H 1.48503 * 109.47024 * 274.97294 * 3 2 1 5 5 H 1.48500 * 109.46731 * 34.96958 * 3 2 1 6 6 H 1.48495 * 109.47198 * 154.97336 * 3 2 1 7 7 C 1.39632 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00202 * 177.31416 * 7 2 1 9 9 C 1.38955 * 119.99414 * 357.31460 * 7 2 1 10 10 O 1.22122 * 120.00796 * 339.48429 * 9 7 2 11 11 N 1.34783 * 119.99914 * 159.48841 * 9 7 2 12 12 C 1.44528 * 120.90365 * 303.35779 * 11 9 7 13 13 C 1.53291 * 111.97373 * 180.27485 * 12 11 9 14 14 S 1.81995 * 104.30894 * 359.76700 * 13 12 11 15 15 C 1.35502 * 120.90976 * 123.16255 * 11 9 7 16 16 C 1.39396 * 125.30575 * 0.02562 * 15 11 9 17 17 C 1.39913 * 119.99915 * 347.64348 * 16 15 11 18 18 C 1.38824 * 125.44085 * 300.96721 * 17 16 15 19 19 C 1.36605 * 113.12990 * 180.02562 * 18 17 16 20 20 C 1.35770 * 115.00286 * 0.02562 * 19 18 17 21 21 S 1.70569 * 111.04684 * 359.97438 * 20 19 18 22 22 H 0.96996 * 120.00191 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.17660 * 59.48735 * 12 11 9 24 24 H 1.09005 * 108.80103 * 300.80710 * 12 11 9 25 25 H 1.08997 * 110.46395 * 241.05826 * 13 12 11 26 26 H 1.08999 * 110.46221 * 118.47609 * 13 12 11 27 27 H 1.08003 * 120.00534 * 167.64066 * 16 15 11 28 28 H 1.07997 * 123.43244 * 0.02617 * 18 17 16 29 29 H 1.08004 * 122.50340 * 179.97438 * 19 18 17 30 30 H 1.07995 * 124.47677 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.3859 2.1071 -1.3948 5 1 1.4973 2.6200 0.8025 6 1 3.5896 1.4121 0.5923 7 6 2.0076 -1.2092 -0.0005 8 1 3.0867 -1.2097 -0.0444 9 6 1.3139 -2.4119 0.0553 10 8 0.1667 -2.4365 0.4735 11 7 1.9071 -3.5516 -0.3520 12 6 2.4466 -3.6713 -1.6875 13 6 3.0662 -5.0516 -1.9341 14 16 2.8321 -5.9373 -0.3616 15 6 2.0174 -4.6150 0.4806 16 6 1.5544 -4.6607 1.7946 17 6 1.1542 -3.4838 2.4367 18 6 1.9559 -2.3707 2.6502 19 6 1.3086 -1.3605 3.3034 20 6 0.0151 -1.6205 3.6237 21 16 -0.4437 -3.1786 3.1029 22 1 -0.4850 0.8400 0.0004 23 1 3.2107 -2.9080 -1.8347 24 1 1.6436 -3.5094 -2.4066 25 1 4.1275 -4.9573 -2.1641 26 1 2.5444 -5.5647 -2.7419 27 1 1.5045 -5.6046 2.3171 28 1 2.9862 -2.3098 2.3324 29 1 1.7901 -0.4251 3.5475 30 1 -0.6371 -0.9318 4.1400 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225235296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:43 Heat of formation + Delta-G solvation = 40.962856 kcal Electronic energy + Delta-G solvation = -18257.198513 eV Core-core repulsion = 15464.739955 eV Total energy + Delta-G solvation = -2792.458558 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41789 -36.22794 -35.23107 -32.87136 -32.10483 -29.71125 -27.66090 -25.90850 -24.01183 -22.78293 -21.61277 -19.34699 -17.99446 -16.91638 -16.79741 -15.95515 -15.42514 -15.30139 -14.48041 -14.17600 -13.52242 -13.28987 -12.96774 -12.62037 -12.22793 -12.15377 -11.62094 -11.40524 -11.35021 -11.26776 -11.13195 -10.81259 -10.70621 -10.40962 -10.31518 -10.00935 -9.63453 -9.04356 -7.89480 -7.66654 -7.26061 -7.07776 -6.50910 -6.07724 -4.93674 1.79352 2.00783 2.39593 2.57257 2.96191 3.07748 3.10914 3.29097 3.51007 3.87905 4.06962 4.21665 4.25118 4.75676 4.96104 5.39427 5.54331 5.92886 6.01213 6.15750 6.30845 6.60562 6.72677 6.85494 7.01154 7.14951 7.28624 7.65411 7.79329 7.83212 7.95125 8.17338 8.73026 9.03291 10.23681 10.43202 Molecular weight = 281.03amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.010318 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.759581 B = 2713.166309 C = 3976.746360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.096 3.904 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.516 6.516 11 N -0.573 5.573 12 C 0.113 3.887 13 C -0.104 4.104 14 S -0.148 6.148 15 C 0.194 3.806 16 C -0.216 4.216 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.278 4.278 21 S 0.163 5.837 22 H 0.274 0.726 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 -4.729 -0.905 6.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.128 4.128 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.366 3.634 10 O -0.396 6.396 11 N -0.294 5.294 12 C -0.012 4.012 13 C -0.253 4.253 14 S 0.090 5.910 15 C -0.029 4.029 16 C -0.255 4.255 17 C -0.215 4.215 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.416 4.416 21 S 0.434 5.566 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.891 -6.446 -0.422 7.078 hybrid contribution 1.512 3.192 -0.789 3.620 sum 4.404 -3.254 -1.211 5.608 Atomic orbital electron populations 1.70021 1.07096 1.28129 1.31524 1.25600 0.94545 1.00372 0.92323 0.86423 0.80740 0.81434 0.78855 1.19714 1.20044 1.18479 1.19553 0.94590 0.90642 1.49557 0.91488 1.16031 0.86438 0.80952 0.80026 1.90809 1.18625 1.84255 1.45864 1.45459 1.58662 1.14986 1.10327 1.21211 0.99297 0.95179 0.85473 1.24246 1.05424 0.97489 0.98132 1.85854 1.72399 1.21648 1.11107 1.22737 0.99297 0.87349 0.93475 1.18872 1.18241 0.96384 0.92052 1.21586 0.95187 0.98143 1.06610 1.20558 0.99851 0.92613 1.02097 1.19671 0.93914 0.98957 1.01590 1.24888 1.00348 1.03047 1.13289 1.82125 1.14795 1.08769 1.50900 0.91514 0.89998 0.90866 0.87525 0.87754 0.86168 0.86144 0.87087 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.98 11.92 55.53 0.66 -19.32 16 2 C 0.10 2.41 5.45 -17.41 -0.09 2.31 16 3 Si 0.90 18.83 29.56 -169.99 -5.02 13.81 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.51 -12.95 7.16 -38.80 -0.28 -13.22 16 8 H 0.07 1.65 7.84 -52.49 -0.41 1.24 16 9 C 0.55 14.33 3.61 -15.99 -0.06 14.28 16 10 O -0.52 -14.87 11.83 4.81 0.06 -14.81 16 11 N -0.57 -12.75 2.86 -119.27 -0.34 -13.09 16 12 C 0.11 1.98 6.48 -4.94 -0.03 1.95 16 13 C -0.10 -1.40 7.39 37.31 0.28 -1.12 16 14 S -0.15 -2.44 23.19 -107.50 -2.49 -4.93 16 15 C 0.19 4.10 6.94 -15.50 -0.11 3.99 16 16 C -0.22 -4.70 9.83 -38.52 -0.38 -5.08 16 17 C -0.10 -2.21 3.37 -38.74 -0.13 -2.34 16 18 C -0.12 -2.81 6.65 -39.95 -0.27 -3.07 16 19 C -0.11 -2.47 10.20 -41.06 -0.42 -2.89 16 20 C -0.28 -6.15 10.99 29.85 0.33 -5.82 16 21 S 0.16 3.60 21.49 -107.50 -2.31 1.29 16 22 H 0.27 6.83 8.30 -40.82 -0.34 6.50 16 23 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 28 H 0.12 2.80 7.93 -52.49 -0.42 2.38 16 29 H 0.11 2.34 8.06 -52.48 -0.42 1.92 16 30 H 0.14 2.72 8.06 -52.49 -0.42 2.29 16 LS Contribution 280.81 15.07 4.23 4.23 Total: -1.00 -30.42 280.81 -9.29 -39.70 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.91 Total: 4.14 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.16 Total: -11.02 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.32 Total: -32.41 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.06 Total: -14.81 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -4.80 Total: -3.64 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.42 -9.29 -39.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225235296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.667 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds