Wall clock time and date at job start Wed Apr 15 2020 11:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86802 * 120.00197 * 2 1 4 4 H 1.48503 * 109.47024 * 274.97294 * 3 2 1 5 5 H 1.48500 * 109.46731 * 34.96958 * 3 2 1 6 6 H 1.48495 * 109.47198 * 154.97336 * 3 2 1 7 7 C 1.39632 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00202 * 177.31416 * 7 2 1 9 9 C 1.38955 * 119.99414 * 357.31460 * 7 2 1 10 10 O 1.22122 * 120.00796 * 339.48429 * 9 7 2 11 11 N 1.34783 * 119.99914 * 159.48841 * 9 7 2 12 12 C 1.44528 * 120.90365 * 303.35779 * 11 9 7 13 13 C 1.53291 * 111.97373 * 180.27485 * 12 11 9 14 14 S 1.81995 * 104.30894 * 359.76700 * 13 12 11 15 15 C 1.35502 * 120.90976 * 123.16255 * 11 9 7 16 16 C 1.39396 * 125.30575 * 0.02562 * 15 11 9 17 17 C 1.39913 * 119.99915 * 347.64348 * 16 15 11 18 18 C 1.38824 * 125.44085 * 300.96721 * 17 16 15 19 19 C 1.36605 * 113.12990 * 180.02562 * 18 17 16 20 20 C 1.35770 * 115.00286 * 0.02562 * 19 18 17 21 21 S 1.70569 * 111.04684 * 359.97438 * 20 19 18 22 22 H 0.96996 * 120.00191 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.17660 * 59.48735 * 12 11 9 24 24 H 1.09005 * 108.80103 * 300.80710 * 12 11 9 25 25 H 1.08997 * 110.46395 * 241.05826 * 13 12 11 26 26 H 1.08999 * 110.46221 * 118.47609 * 13 12 11 27 27 H 1.08003 * 120.00534 * 167.64066 * 16 15 11 28 28 H 1.07997 * 123.43244 * 0.02617 * 18 17 16 29 29 H 1.08004 * 122.50340 * 179.97438 * 19 18 17 30 30 H 1.07995 * 124.47677 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 2.3859 2.1071 -1.3948 5 1 1.4973 2.6200 0.8025 6 1 3.5896 1.4121 0.5923 7 6 2.0076 -1.2092 -0.0005 8 1 3.0867 -1.2097 -0.0444 9 6 1.3139 -2.4119 0.0553 10 8 0.1667 -2.4365 0.4735 11 7 1.9071 -3.5516 -0.3520 12 6 2.4466 -3.6713 -1.6875 13 6 3.0662 -5.0516 -1.9341 14 16 2.8321 -5.9373 -0.3616 15 6 2.0174 -4.6150 0.4806 16 6 1.5544 -4.6607 1.7946 17 6 1.1542 -3.4838 2.4367 18 6 1.9559 -2.3707 2.6502 19 6 1.3086 -1.3605 3.3034 20 6 0.0151 -1.6205 3.6237 21 16 -0.4437 -3.1786 3.1029 22 1 -0.4850 0.8400 0.0004 23 1 3.2107 -2.9080 -1.8347 24 1 1.6436 -3.5094 -2.4066 25 1 4.1275 -4.9573 -2.1641 26 1 2.5444 -5.5647 -2.7419 27 1 1.5045 -5.6046 2.3171 28 1 2.9862 -2.3098 2.3324 29 1 1.7901 -0.4251 3.5475 30 1 -0.6371 -0.9318 4.1400 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225235296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:42 Heat of formation + Delta-G solvation = 23.667492 kcal Electronic energy + Delta-G solvation = -18257.948496 eV Core-core repulsion = 15464.739955 eV Total energy + Delta-G solvation = -2793.208541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 281.028 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.15259 -37.92187 -37.06732 -34.72814 -33.74018 -31.23174 -29.51138 -27.67015 -25.67846 -24.23392 -23.37036 -21.10971 -19.71921 -18.65828 -18.37835 -17.79940 -17.04712 -16.76978 -16.20184 -15.86798 -15.20963 -14.80793 -14.56285 -14.22545 -13.79334 -13.72626 -13.24771 -13.12358 -12.95666 -12.88468 -12.76905 -12.68726 -12.34878 -12.06548 -11.91650 -11.61290 -11.37036 -10.93905 -9.86377 -9.11429 -8.96899 -8.84362 -8.39343 -7.71277 -6.92211 0.20690 0.52283 0.84185 1.08114 1.31028 1.37492 1.49498 1.56340 1.76670 2.16035 2.28582 2.44451 2.61156 3.37908 3.60947 3.91384 4.45204 4.51476 4.58786 4.63929 4.71876 4.90817 4.96199 5.19908 5.21975 5.31779 5.54416 5.91833 5.99310 6.06745 6.09536 6.46965 6.78688 7.17415 8.33007 8.53277 Molecular weight = 281.03amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.010318 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.759581 B = 2713.166309 C = 3976.746360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.058 3.942 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.554 3.446 10 O -0.555 6.555 11 N -0.587 5.587 12 C 0.103 3.897 13 C -0.091 4.091 14 S -0.115 6.115 15 C 0.181 3.819 16 C -0.247 4.247 17 C -0.100 4.100 18 C -0.135 4.135 19 C -0.120 4.120 20 C -0.289 4.289 21 S 0.164 5.836 22 H 0.278 0.722 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -5.038 -2.217 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.163 4.163 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.365 3.635 10 O -0.438 6.438 11 N -0.308 5.308 12 C -0.021 4.021 13 C -0.240 4.240 14 S 0.123 5.877 15 C -0.042 4.042 16 C -0.287 4.287 17 C -0.220 4.220 18 C -0.165 4.165 19 C -0.152 4.152 20 C -0.426 4.426 21 S 0.435 5.565 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.087 0.913 25 H 0.160 0.840 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.502 -6.786 -1.756 8.331 hybrid contribution 1.049 3.192 -0.473 3.393 sum 5.551 -3.594 -2.229 6.978 Atomic orbital electron populations 1.70132 1.08879 1.29211 1.32768 1.26438 0.95084 1.03617 0.91163 0.85411 0.79362 0.76939 0.79398 1.18336 1.20029 1.17911 1.19748 0.94668 0.91234 1.49774 0.91203 1.16148 0.86054 0.82131 0.79156 1.90779 1.20195 1.85394 1.47399 1.45376 1.58708 1.14613 1.12093 1.21432 0.99512 0.98086 0.83042 1.24444 1.07802 0.94535 0.97183 1.85733 1.70877 1.19223 1.11909 1.23167 0.98391 0.88910 0.93748 1.19131 1.19845 0.96628 0.93052 1.21863 0.95305 0.98582 1.06217 1.20544 0.99639 0.93274 1.03093 1.19837 0.94285 0.99349 1.01769 1.25134 1.00547 1.03451 1.13516 1.81990 1.14819 1.08905 1.50810 0.91229 0.89326 0.91268 0.83976 0.84717 0.84720 0.86898 0.86064 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.63 11.92 21.77 0.26 -42.38 16 2 C 0.06 2.89 5.45 85.16 0.46 3.35 16 3 Si 0.97 38.12 29.56 68.60 2.03 40.14 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.52 -26.42 7.16 22.78 0.16 -26.26 16 8 H 0.07 3.41 7.84 -2.91 -0.02 3.38 16 9 C 0.55 28.78 3.61 84.41 0.30 29.09 16 10 O -0.56 -32.55 11.83 -5.71 -0.07 -32.62 16 11 N -0.59 -25.72 2.86 -649.29 -1.85 -27.57 16 12 C 0.10 3.39 6.48 86.84 0.56 3.95 16 13 C -0.09 -2.09 7.39 72.08 0.53 -1.56 16 14 S -0.12 -3.48 23.19 -56.49 -1.31 -4.79 16 15 C 0.18 7.49 6.94 84.41 0.59 8.08 16 16 C -0.25 -10.80 9.83 22.95 0.23 -10.57 16 17 C -0.10 -4.69 3.37 22.82 0.08 -4.62 16 18 C -0.14 -6.39 6.65 22.03 0.15 -6.25 16 19 C -0.12 -5.52 10.20 21.32 0.22 -5.31 16 20 C -0.29 -12.92 10.99 67.25 0.74 -12.18 16 21 S 0.16 7.35 21.49 -56.49 -1.21 6.13 16 22 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 23 H 0.09 2.78 7.93 -2.38 -0.02 2.76 16 24 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 25 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.14 5.29 8.06 -2.91 -0.02 5.27 16 28 H 0.11 5.37 7.93 -2.91 -0.02 5.35 16 29 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 30 H 0.15 6.12 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -66.19 280.81 3.02 -63.18 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 1.16 Total: 20.17 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 4.02 Total: -22.27 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -1.60 Total: -69.95 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.07 Total: -32.62 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.52 Total: 1.34 kcal Total: -66.19 3.02 -63.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225235296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.843 kcal (2) G-P(sol) polarization free energy of solvation -66.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds