Wall clock time and date at job start Wed Apr 15 2020 11:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35533 * 116.99765 * 2 1 4 4 C 1.38695 * 120.05401 * 269.97428 * 3 2 1 5 5 Br 1.89098 * 119.83358 * 0.02562 * 4 3 2 6 6 C 1.37949 * 120.33377 * 180.02562 * 4 3 2 7 7 C 1.40213 * 120.43661 * 0.02978 * 6 4 3 8 8 C 1.43205 * 119.95116 * 179.97438 * 7 6 4 9 9 N 6.71352 * 117.03223 * 359.65453 * 2 1 3 10 10 C 1.39032 * 120.10005 * 359.67118 * 7 6 4 11 11 C 1.40422 * 119.66168 * 0.60062 * 10 7 6 12 12 C 1.41219 * 120.21250 * 179.69979 * 11 10 7 13 13 H 1.08001 * 120.00618 * 154.57811 * 12 11 10 14 14 C 1.39916 * 120.00092 * 334.58342 * 12 11 10 15 15 N 1.30873 * 119.99696 * 342.76854 * 14 12 11 16 16 Si 1.86790 * 120.00303 * 162.77274 * 14 12 11 17 17 H 1.48501 * 109.47286 * 265.58998 * 16 14 12 18 18 H 1.48498 * 109.47343 * 25.59297 * 16 14 12 19 19 H 1.48502 * 109.47370 * 145.59379 * 16 14 12 20 20 H 1.09006 * 109.46647 * 299.99848 * 1 2 3 21 21 H 1.08995 * 109.47435 * 59.99930 * 1 2 3 22 22 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.78179 * 180.02562 * 6 4 3 24 24 H 1.07998 * 120.17020 * 180.32164 * 10 7 6 25 25 H 0.96997 * 120.00256 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 2.3601 1.8263 -1.2005 5 35 1.9294 0.9810 -2.8363 6 6 2.9868 3.0552 -1.2072 7 6 3.3124 3.6931 -0.0018 8 6 3.9635 4.9684 -0.0209 9 7 4.4802 5.9800 -0.0361 10 6 2.9986 3.0921 1.2120 11 6 2.3659 1.8386 1.2238 12 6 2.0476 1.2147 2.4501 13 1 1.2379 0.5017 2.4992 14 6 2.7812 1.5204 3.6017 15 7 3.9482 2.1036 3.4984 16 14 2.0950 1.0959 5.2863 17 1 1.3821 2.2742 5.8417 18 1 1.1490 -0.0422 5.1631 19 1 3.2083 0.7181 6.1935 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.2282 3.5291 -2.1472 24 1 3.2443 3.5848 2.1412 25 1 4.4570 2.3152 4.2967 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225724523.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:45 Heat of formation + Delta-G solvation = -5.588889 kcal Electronic energy + Delta-G solvation = -13930.561389 eV Core-core repulsion = 11341.026839 eV Total energy + Delta-G solvation = -2589.534550 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 280.979 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49190 -38.38411 -37.03674 -35.75638 -32.83091 -31.71245 -29.88907 -28.01153 -27.02090 -23.80630 -23.09250 -19.91807 -18.52444 -18.22686 -17.27621 -16.47744 -16.15740 -15.13216 -14.84037 -14.76425 -14.64968 -14.50660 -13.67606 -13.59957 -13.45177 -13.05237 -12.87572 -12.61838 -12.24636 -12.13276 -11.74466 -11.49903 -11.07633 -11.01353 -10.51930 -9.55223 -9.30254 -8.75976 -6.44134 0.03216 0.62890 0.83562 1.41938 1.45434 1.57090 1.70330 1.95686 2.20094 2.69189 3.04258 3.17843 3.50779 4.36610 4.58813 4.67912 4.75207 4.81271 4.89401 5.02541 5.13869 5.32067 5.59043 5.66731 5.87807 6.28431 6.46089 6.60913 6.73834 7.04209 8.19809 Molecular weight = 280.98amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.008146 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.941826 B = 3436.632639 C = 4781.980032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.331 6.331 3 C 0.016 3.984 4 C -0.073 4.073 5 Br -0.051 7.051 6 C -0.159 4.159 7 C -0.022 4.022 8 C 0.292 3.708 9 N -0.473 5.473 10 C -0.102 4.102 11 C 0.071 3.929 12 C -0.454 4.454 13 H 0.090 0.910 14 C 0.038 3.962 15 N -0.812 5.812 16 Si 0.982 3.018 17 H -0.261 1.261 18 H -0.254 1.254 19 H -0.271 1.271 20 H 0.038 0.962 21 H 0.044 0.956 22 H 0.107 0.893 23 H 0.135 0.865 24 H 0.123 0.877 25 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 -3.952 -4.982 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.247 6.247 3 C -0.032 4.032 4 C -0.152 4.152 5 Br 0.034 6.966 6 C -0.182 4.182 7 C -0.026 4.026 8 C -0.021 4.021 9 N -0.150 5.150 10 C -0.124 4.124 11 C 0.067 3.933 12 C -0.481 4.481 13 H 0.108 0.892 14 C -0.179 4.179 15 N -0.437 5.437 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.178 1.178 19 H -0.196 1.196 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.125 0.875 23 H 0.153 0.847 24 H 0.141 0.859 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.230 -2.807 -5.491 8.086 hybrid contribution -0.187 -0.072 1.093 1.111 sum -5.417 -2.879 -4.399 7.549 Atomic orbital electron populations 1.23069 0.79635 1.03587 1.00151 1.85896 1.20047 1.24761 1.94019 1.18794 1.05601 0.88241 0.90535 1.21745 1.06632 0.96525 0.90341 1.96480 1.93171 1.80769 1.26164 1.20273 1.06557 0.94987 0.96373 1.15836 1.03434 0.88464 0.94907 1.25936 0.92054 0.92496 0.91650 1.81094 1.11707 1.12539 1.09627 1.21377 1.00712 0.94886 0.95462 1.17908 0.91965 0.90798 0.92632 1.19731 1.14838 1.21398 0.92170 0.89173 1.26778 0.93479 0.92513 1.05151 1.69810 1.09738 1.30226 1.33920 0.85153 0.79041 0.79897 0.75616 1.18576 1.17779 1.19594 0.94295 0.93753 0.87467 0.84696 0.85944 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.94 113.37 1.24 2.19 15 2 O -0.33 -13.48 9.02 -88.37 -0.80 -14.27 15 3 C 0.02 0.70 5.74 23.16 0.13 0.83 15 4 C -0.07 -2.87 6.22 22.31 0.14 -2.73 15 5 Br -0.05 -1.65 33.10 -20.37 -0.67 -2.33 15 6 C -0.16 -6.09 9.47 22.68 0.21 -5.88 15 7 C -0.02 -0.90 5.73 -21.36 -0.12 -1.02 15 8 C 0.29 11.87 15.31 88.33 1.35 13.22 15 9 N -0.47 -19.69 18.54 19.01 0.35 -19.34 15 10 C -0.10 -4.65 8.38 22.99 0.19 -4.46 15 11 C 0.07 3.34 5.57 -21.24 -0.12 3.22 15 12 C -0.45 -21.17 8.71 23.41 0.20 -20.97 15 13 H 0.09 4.07 7.00 -2.91 -0.02 4.05 15 14 C 0.04 1.69 5.14 85.24 0.44 2.13 15 15 N -0.81 -37.90 10.98 21.82 0.24 -37.67 15 16 Si 0.98 33.92 29.59 68.60 2.03 35.95 15 17 H -0.26 -8.77 7.11 99.48 0.71 -8.06 15 18 H -0.25 -8.54 7.11 99.48 0.71 -7.84 15 19 H -0.27 -9.14 7.11 99.48 0.71 -8.44 15 20 H 0.04 1.25 7.69 -2.38 -0.02 1.23 15 21 H 0.04 1.32 8.11 -2.39 -0.02 1.30 15 22 H 0.11 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.14 4.56 8.06 -2.91 -0.02 4.53 15 24 H 0.12 5.87 6.20 -2.91 -0.02 5.86 15 25 H 0.29 12.49 8.30 -92.71 -0.77 11.72 15 Total: -1.00 -50.08 257.25 6.06 -44.03 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.23 Total: 7.09 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 3.67 Total: -13.46 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.59 Total: -57.00 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.80 Total: -14.27 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Atomic # 35 Polarization: -1.65 SS G_CDS: -0.67 Total: -2.33 kcal Total: -50.08 6.06 -44.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225724523.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.436 kcal (2) G-P(sol) polarization free energy of solvation -50.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds